Acute hepatopancreatic necrosis disease (AHPND) is a shrimp disease caused by a unique strain of Vibrio parahaemolyticus (VpAHPND). This strain contains a highly pathogenic ~69 kbp (pVA1) plasmid encoding PirAvp and/or PirBvp deadly toxins. The pVA1-like plasmid is also reported to be found in Vibrio harveyi, Vibrio campbellii and Vibrio owensii. Therefore, prompt detection of the bacterial species carrying the PirAvp and/or PirBvp toxins producing genes is essential to control the spread of the disease. In this study, a new 5-plex PCR detection method was developed and optimised to detect VpAHPND or tetracycline resistant VpAHPND strain. This technique is designed to include five pairs of primers, which allow a comprehensive PCR diagnostic method for AHPND. The primers flanked five regions which are the Photorhabdus insect-related (Pir) toxin-like genes; pirAvp and pirBvp, thermolabile hemolysin (tlh), housekeeping (toxR) or tetracycline resistance (tetB) genes and also 16S ribosomal RNA (16s rRNA) gene as an internal amplification control (IAC). The detection limit of the 5-plex PCR method is at 10 pg/μl of extracted genomic DNA. Whereas, the specificity of the method analysed using nine VpAHPND strains, three non-AHPND Vibrio species and ten other bacterial species revealed that the method does not give unspecific reactions with non-AHPND bacteria. The 5-plex PCR method evaluated using three locally isolated VpAHPND strains and 41 isolates of Vibrio spp. obtained from field samples confirmed that the method developed allows rapid, sensitive and reliable detection of AHPND-causing bacterial strains. The VpAHPND strains that were detected positive for the tetB gene also showed resistant to tetracycline by disk diffusion antibiotic susceptibility test. The presence of IAC and the primers targeting the tetB gene helps to indicate false-negative results and to detect tetracycline resistant AHPND strains respectively thus differentiating this method from previously reported AHPND PCR methods.
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