About 19 % of the Italian territory is covered by protected areas (PAs), 5.1 % of which fall in IUCN categories Ia and II, which can be considered strictly protected areas (StPAs). The 2030 EU Biodiversity Strategy sets a target of 30 % coverage for PAs (of which 10 % should be StPAs). We assessed the area coverage of StPAs, for the territory of Italy, with respect to biogeographical regions, ecoregions, elevation range, habitats, and the distribution of species threatened with extinction according to the IUCN Red List (Vulnerable, VU; Endangered, EN; or Critically Endangered, CR). We found that most of the StPAs are located in the Mediterranean biogeographical region, followed by the Alpine and Continental regions, and that the spatial distribution of such protected areas is biased towards higher elevation. Moreover, we found that three of the fourteen terrestrial ecoregions of Italy are not protected at all by StPAs (i.e., Illyrian, Ligurian-Provencal, and Central-Adriatic), while the Po Plain and the Sicilia Sections are only marginally protected. Moreover, nine habitats are not covered by any StPAs including one priority habitat (Inland salt meadows). Finally, we found unprotected species among freshwater fish (21), amphibians (3 VU, 3 CR), reptiles (1 CR), birds (2 NE), mammals (1 VU), and plants (20 VU, 14 EN, 21 CR). Our findings suggest that the current amount and spatial distribution of StPAs of Italy are far from the targets of the EU Biodiversity Strategy and needs improvements.