Ecological water diversion projects (EWDP) is one of the most important initiatives for oases restoration in arid endorheic basins. Fine monitoring of the long-term and continuous changes in vegetation cover before and after the EWDP is important to evaluate the effects of EWDP on ecosystem restoration. In this study, a trajectory-based change detection approach was applied with the Landsat-based detection of trends in disturbance and recovery (LandTrendr) algorithm on Google Earth Engine to map vegetation cover change trajectories in Ejina Oasis in the lower Heihe River Basin of China during 1990–2020. In addition to monotonic changes (i.e., continuous greening and continuous browning), LandTrendr also can flexibly capture the breaks of greening or browning events, including the greening with negative break, browning with positive break, browning to greening, and greening to browning. These changes mainly happened in shrub land and the area with land use transition. Approximately 82 % of the oasis ecosystem has been restored by the implementation of EWDP since 2000. However, in the past decade, the EWDP also caused some negative effects on vegetation cover in some areas. Both the categories of browning with positive break and greening to browning became widespread after 2010, with the cumulative proportions accounting for 79.4 % and 70.1 % of each category. The mean magnitude and slope of change in NDVI in these two categories after 2010 were −0.03 and −0.008 yr−1, −0.12 and −0.035 yr−1, respectively. This research demonstrated that the proposed approach was effective and useful for continuously monitoring the timing and extent of vegetation recovery processes in the hyper-arid endorheic basin. The EWDP plays an important role in vegetation restoration, but we also need to continuously monitor negative impacts which are crucial for environmental assessment and policy making in the arid endorheic basin.