We investigate the defect structures and the potentials of mean force (PMF) that arise when faceted nanoparticles, namely cubes and triangular prisms, are immersed in a nematic liquid crystal (NLC). Using a mesoscale theory for the tensor order parameter Q of the nematic, we have determined the thermodynamic stability of different orientations of one nanoparticle with respect to the far-field director n(r). A nanocube with perpendicular anchoring of the nematic at its surfaces tends to align in such a way that none of its faces is parallel or perpendicular to n(r); the most stable defect structure consists of a distorted Saturn ring with sharp bends, which covers six of the edges of the cubic particle. In contrast, a triangular nanoprism with homeotropic anchoring of the nematic at its surfaces tends to align with its long axis perpendicular to the far-field director n(r), and with one of its rectangular faces perpendicular to n(r). For such a configuration, the defect structure consists of two large disclination regions covering the two triangular faces of the prism, and two narrow disclination regions surrounding two of the rounded edges of the prism. We also studied the thermodynamic stability of different arrays of two particles, finding that for two nanocubes that approach each other keeping their orientations fixed, the nematic forms a distorted ‘entangled hyperbolic’ defect structure around the particles, in analogy to what was observed for pairs of spherical and spherocylindrical nanoparticles in close proximity. The NLC-mediated interactions between the nanocubes in this case are of the order of − 85k B T, which are weaker than those observed for spherical nanoparticles of comparable diameter (∼ − 110k B T). For systems of two nanoprisms having their long axes perpendicular to the far-field director, we considered three particle arrays: linear (the long axes of the particles are collinear and the particles have the same orientation), parallel (the long axes of the particles are parallel and the particles have the same orientation) and inverted parallel (the long axes of the particles are parallel, and one of the prisms is inverted with respect to the other one). Our results suggest that inverted parallel arrays are thermodynamically more stable than linear arrays, which in turn are more stable than parallel arrays. The minima observed in the PMF curves for the inverted parallel (∼ − 1050k B T) and linear arrays (∼ − 525k B T) are significantly deeper than that observed for the parallel array (∼ − 150k B T). In comparison, a pair of nanospheres with a diameter comparable to the size of the triangular faces of our nanoprisms has a PMF minimum of ∼73k B T when the spheres are in close proximity. These NLC-mediated, anisotropic interparticle interactions can make the particles bind together at specific locations, and thus could be used to assemble the particles into ordered structures with different morphologies.