Studying the linkage between manufacturing industry and logistics industry is conducive to explore and improve the efficiency of the common development of them. In order to study the interaction of logistics industry on the development of manufacturing industry and the development of two-industry-linkage, it first calculates the high-quality development level of logistics industry and manufacturing industry, then uses the coupling coordination model to theoretically analyze and empirically test the coupling and coordinated development level of high-quality development of logistics industry and manufacturing industry from three aspects: coupling degree, coordination degree and coupling coordination degree, and based on the perspective of integration field theory, it takes the three basic synthetic fields of logistics integrator, logistics base-nuclear and logistics connection-key as the analysis dimension, PVAR model was introduced for in-depth analysis the impact of logistics industry on manufacturing industry and the level of the two-industry-linkage. It was found that the high-quality development of China’s logistics industry and manufacturing industry is close on the whole, and the development trend is consistent, the high-quality development of them is mainly caused by the change of scale, but there is no obvious change in technical efficiency, which also provides a way for the high-quality development of the two-industry-linkage in the future. The two-industry-linkage mostly belongs to the situation of low-level mutual restriction, which has not yet reached a high level of mutual promotion, resulting in the overall coupling coordination degree basically in a state of barely coordination. The development of logistics industry and manufacturing industry need to go through certain practice and running in, when there is an error matching between the two, the logistics industry will inhibit the two-industry-linkage. When the economy develops to a certain extent, the expansion of the logistics system scale to the level of the two-industry-linkage is not necessarily beneficial, blindly exceeding the demand for logistics investment will cause a waste of resources, which is not conducive to the high-quality development of the logistics industry and the coupling and coordinated development of the two industries. In the long run, the change of the logistics basic-nuclear capacity, the logistics integrator scale and logistics connection-key level will have a positive impact on the change of green total factor productivity in manufacturing industry.