Abstract Not all clones that participate in the effector Th1 response to intracellular viral or bacterial infection can give rise to memory T cells. In this study, we generated a mouse with a fixed TCRα chain of known specificity in order to characterize the evolution of effector and memory TCRβ repertoires following LCMV or Listeria infection by deep sequencing. The repertoire diversity of antigen-specific Th1 cells significantly decreased in the transition from effector to memory, and hierarchical cluster analysis revealed that the TCR repertoires of memory T cells, regardless of infectious model, were more similar to each other than to the effector Th1 populations from which they arose. We further generated a large panel of TCRs derived from our sequencing results that were cloned into retroviral expression vectors and used to generate TCR “retrogenic” bone marrow chimeras. Individual clonal T cell populations harvested from these mice were analyzed in adoptive transfer experiments to allow for their longitudinal analysis following infection. We found that the individual memory potential of each clone did not correspond to overall TCR avidity, as measured in tetramer equilibrium binding assays, but to the acquisition of high functional avidity and slow off-rates, as determined by tetramer decay. Our findings support a model in which differential selection of the Th1 effector and memory pools depends at least in part on the qualitative nature of TCR-driven CD4+ T cell activation.
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