Taxonomic Orders Research Articles

Trends in Stroke Kinematics, Reynolds Number, and Swimming Mode in Shrimp-Like Organisms.

Metachronal propulsion is commonly seen in organisms with the caridoid facies body plan, i.e. shrimp-like organisms, as they beat their pleopods in an adlocomotory sequence. These organisms exist across length scales ranging several orders of Reynolds number magnitude, from 10 to 104, during locomotion. Further, by altering their stroke kinematics, these organisms achieve three distinct swimming modes. To better understand the relationship between Reynolds number, stroke kinematics, and resulting swimming mode, Euphausia pacifica stroke kinematics were quantified using high-speed digital recordings and compared to the results for the larger E. superba. Euphausia pacifica consistently operate with a greater beat frequency and smaller stroke amplitude than E. superba for each swimming mode, suggesting that length scale may affect the kinematics needed to achieve similar swimming modes. To expand on this observation, these euphausiid data are used in combination with previously-published stroke kinematics from mysids and stomatopods to identify broad trends across swimming mode and length scale in metachrony. Principal component analysis (PCA) reveals trends in stroke kinematics and Reynolds number as well as the variation among taxonomic order. Overall, larger beat frequencies, stroke amplitudes, between-cycle phase lags, and Reynolds numbers are more representative of the fast forward swimming mode compared to the slower hovering mode. Additionally, each species has a unique combination of kinematics that result in metachrony, indicating that there are other factors, perhaps morphological, which affect the overall metachronal characteristics of an organism. Finally, uniform phase lag, in which the timing between power strokes of all pleopods is equal, in 5-paddle systems is achieved at different Reynolds numbers for different swimming modes, highlighting the importance of taking into consideration stroke kinematics, length scale, and the resulting swimming mode.

Paradigms of actinorhizal symbiosis under the regime of global climatic changes: New insights and perspectives.

Nitrogen occurs as inert and inaccessible dinitrogen gaseous form (N2 ) in the atmosphere. Biological nitrogen fixation is a chief process that makes this dinitrogen (N2 ) accessible and bioavailable in the form of ammonium (NH4 + ) ions. The key organisms to fix nitrogen are certain prokaryotes, called diazotrophs either in the free-living form or establishing significant mutual relationships with a variety of plants. On such examples is ~95-100 MY old incomparable symbiosis between dicotyledonous trees and a unique actinobacterial diazotroph in diverse ecosystems. In this association, the root of the certain dicotyledonous tree (~25 genera and 225 species) belonging to three different taxonomic orders, Fagales, Cucurbitales, and Rosales (FaCuRo) known as actinorhizal trees can host a diazotroph, Frankia of order Frankiales. Frankia is gram-positive, branched, filamentous, sporulating, and free-living soil actinobacterium. It resides in the specialized, multilobed, and coralloid organs (lateral roots but without caps), the root nodules of actinorhizal tress. This review aims to provide systematic information on the distribution and the phylogenetic diversity of hosts from FaCuRo and their micro-endosymbionts (Frankia spp.), colonization mechanisms, and signaling pathways. We also aim to provide details on developmental and physiological imperatives for gene regulation and functional genomics of symbiosis, phenomenal restoration ecology, influences of contemporary global climatic changes, and anthropogenic impacts on plant-Frankia interactions for the functioning of ecosystems and the biosphere.

Organizing the Global Diversity of Microviruses.

ABSTRACTMicroviruses encompass an astonishing array of small, single-stranded DNA phages that, due to the surge in metagenomic surveys, are now known to be prevalent in most environments. Current taxonomy concedes the considerable diversity within this lineage to a single family (the Microviridae), which has rendered it difficult to adequately and accurately assess the amount of variation that actually exists within this group. We amassed and curated the largest collection of microviral genomes to date and, through a combination of protein-sharing networks and phylogenetic analysis, discovered at least three meaningful taxonomic levels between the current ranks of family and genus. When considering more than 13,000 microviral genomes from recognized lineages and as-yet-unclassified microviruses in metagenomic samples, microviral diversity is better understood by elevating microviruses to the level of an order that consists of three suborders and at least 19 putative families, each with their respective subfamilies. These revisions enable fine-scale assessment of microviral dynamics: for example, in the human gut, there are considerable differences in the abundances of microviral families both between urban and rural populations and in individuals over time. In addition, our analysis of genome contents and gene exchange shows that microviral families carry no recognizable accessory metabolic genes and rarely, if ever, engage in horizontal gene transfer across microviral families or with their bacterial hosts. These insights bring microviral taxonomy in line with current developments in the taxonomy of other phages and increase the understanding of microvirus biology.

Universal Mitochondrial Multi-Locus Sequence Analysis (mtMLSA) to Characterise Populations of Unanticipated Plant Pest Biosecurity Detections.

Simple SummaryAgricultural and environmental sustainability requires effective biosecurity responses that prevent the establishment or spread of exotic insect pests. Understanding where new detections may have come from or if recurrent detections are connected contributes to this. Suitable population genetic markers use relatively rapidly evolving gene regions which render the PCR method species-specific at best. Because resource limitations mean these are pre-emptively developed for the highest risk species, populations of other exotic pests are unable to be characterised at the time. Here we have developed a generic method that is useful across species within the same taxonomic Order, including where there is little or no prior knowledge of their gene sequences. Markers are formed by concomitant sequencing of four gene regions. Sequence concatenation was shown to retrieve higher resolution signatures than standard DNA barcoding. The method is encouragingly universal, as illustrated across species in ten fly and 11 moth superfamilies. Although as-yet untested in a biosecurity situation, this relatively low-tech, off-the-shelf method makes a proactive contribution to the toolbox of quarantine agencies at the time of detection without the need for impromptu species-specific research and development.Biosecurity responses to post-border exotic pest detections are more effective with knowledge of where the species may have originated from or if recurrent detections are connected. Population genetic markers for this are typically species-specific and not available in advance for any but the highest risk species, leaving other less anticipated species difficult to assess at the time. Here, new degenerate PCR primer sets are designed for within the Lepidoptera and Diptera for the 3′ COI, ND3, ND6, and 3′ plus 5′ 16S gene regions. These are shown to be universal at the ordinal level amongst species of 14 and 15 families across 10 and 11 dipteran and lepidopteran superfamilies, respectively. Sequencing the ND3 amplicons as an example of all the loci confirmed detection of population-level variation. This supported finding multiple population haplotypes from the publicly available sequences. Concatenation of the sequences also confirmed that higher population resolution is achieved than for the individual genes. Although as-yet untested in a biosecurity situation, this method is a relatively simple, off-the-shelf means to characterise populations. This makes a proactive contribution to the toolbox of quarantine agencies at the time of detection without the need for unprepared species-specific research and development.

A quick evaluation of ecological restoration based on arthropod communities and trophic guilds in an urban ecological preserve in Mexico City

BackgroundRestoration practices usually emphasize on the structural part of the biodiversity; also, most studies have focused on plants and very few have been conducted on arthropods and its function after restoration. The Pedregal de San Angel Ecological Reserve (PSAER) is a protected area immersed in Mexico City and it has been drastically affected by different anthropogenic disturbances. The aim of this study was to compare the relative diversity, richness, and abundance of species level identification, but also the composition through an analysis of ordination of taxonomic (species, family, and order level) and functional (trophic guild) traits of arthropods in three sites subjected to ecological restoration within the PSAER. Restored sites were also compared to conserved and disturbed sites, to evaluate whether restoration efforts are effective at the reserve.MethodsArthropods were sampled using pan traps during September 2013 in 11 sites (three restored, four conserved and four disturbed) inside the PSAER. All sampled species were taxonomically identified at species of morphospecies (inside a family) and assigned to a trophic guild. Differences in diversity, richness and abundance were evaluated through effective number of species, comparisons of Chao’s1 estimated richness and a non-parametric Kruskal–Wallis test, respectively. Both taxonomic and trophic guild composition were evaluated using a multivariate analysis and a post hoc test.ResultsWe found some differences in richness, abundance, and diversity between sites, but not a clear pattern of differentiation between restored to disturbed sites. The NMDS showed differences at species and order level, and with trophic guilds, among site types. Families were not useful to differentiate types of sites. Regarding guilds, predators were more abundant in conserved sites, while phytophagous insects were more abundant in disturbed sites.ConclusionsSpecies and order level were useful to identify differences in communities of arthropods in sites with different management. The trophic guild approach provides information about the functional state of the restored sites. Nevertheless, our quick evaluation shows that restoration efforts at PSAER have not been successful in differentiate restored to disturbed sites yet.

Abundant Species Diversity and Essential Functions of Bacterial Communities Associated with Dinoflagellates as Revealed from Metabarcoding Sequencing for Laboratory-Raised Clonal Cultures.

Interactions between algae and bacteria represent an important inter-organism association in aquatic environments, which often have cascading bottom-up influences on ecosystem-scale processes. Despite the increasing recognition of linkages between bacterioplankton and dynamics of dinoflagellate blooms in the field, knowledge about the forms and functions of dinoflagellate-bacteria associations remains elusive, mainly due to the ephemeral and variable conditions in the field. In this study, we characterized the bacterial community associated with laboratory cultures of 144 harmful algal strains, including 130 dinoflagellates (covering all major taxonomic orders of dinoflagellates) and 14 non-dinoflagellates, via high-throughput sequencing for 16S rRNA gene amplicons. A total of 4577 features belonging to bacteria kingdom comprising of 24 phyla, 55 classes, 134 orders, 273 families, 716 genera, and 1104 species were recovered from the algal culture collection, and 3 phyla (Proteobacteria, Bacteroidetes, and Firmicutes) were universally present in all the culture samples. Bacterial communities in dinoflagellates cultures exhibited remarkable conservation across different algal strains, which were dominated by a relatively small number of taxa, most notably the γ-proteobacteria Methylophaga, Marinobacter and Alteromonas. Although the bacterial community composition between dinoflagellates and non-dinoflagellate groups did not show significant difference in general, dinoflagellates harbored a large number of unique features (up to 3811) with relatively low individual abundance and enriched in the potential methylotrophs Methylophaga. While the bacterial assemblages associated with thecate and athecate dinoflagellates displayed no general difference in species composition and functional groups, athecate dinoflagellates appeared to accommodate more aerobic cellulolytic members of Actinobacteria, implying a more possible reliance on cellulose utilization as energy source. The extensive co-occurrence discovered here implied that the relationships between these algal species and the bacterial consortia could be viewed as either bilaterally beneficial (i.e., mutualism) or unilaterally beneficial at least to one party but virtually harmless to the other party (i.e., commensalism), whereas both scenarios support a long-term and stable co-existence rather than an exclusion of one or the other. Our results demonstrated that dinoflagellates-associated bacterial communities were similar in composition, with enrichment of potential uncultured methylotrophs to one-carbon compounds. This work enriches the knowledge about the fundamental functions of bacteria consortia associated with the phycospheres of dinoflagellates and other HABs-forming microalgae.

Aquatic birds have middle ears adapted to amphibious lifestyles

Birds exhibit wide variation in their use of aquatic environments, on a spectrum from entirely terrestrial, through amphibious, to highly aquatic. Although there are limited empirical data on hearing sensitivity of birds underwater, mounting evidence indicates that diving birds detect and respond to sound underwater, suggesting that some modifications of the ear may assist foraging or other behaviors below the surface. In air, the tympanic middle ear acts as an impedance matcher that increases sound pressure and decreases sound vibration velocity between the outside air and the inner ear. Underwater, the impedance-matching task is reversed and the ear is exposed to high hydrostatic pressures. Using micro- and nano-CT (computerized tomography) scans of bird ears in 127 species across 26 taxonomic orders, we measured a suite of morphological traits of importance to aerial and aquatic hearing to test predictions relating to impedance-matching in birds with distinct aquatic lifestyles, while accounting for allometry and phylogeny. Birds that engage in underwater pursuit and deep diving showed the greatest differences in ear structure relative to terrestrial species. In these heavily modified ears, the size of the input areas of both the tympanic membrane and the columella footplate of the middle ear were reduced. Underwater pursuit and diving birds also typically had a shorter extrastapedius, a reduced cranial air volume and connectivity and several modifications in line with reversals of low-to-high impedance-matching. The results confirm adaptations of the middle ear to aquatic lifestyles in multiple independent bird lineages, likely facilitating hearing underwater and baroprotection, while potentially constraining the sensitivity of aerial hearing.

Worldwide diversity of endophytic fungi and insects associated with dormant tree twigs

International trade in plants and climate change are two of the main factors causing damaging tree pests (i.e. fungi and insects) to spread into new areas. To mitigate these risks, a large-scale assessment of tree-associated fungi and insects is needed. We present records of endophytic fungi and insects in twigs of 17 angiosperm and gymnosperm genera, from 51 locations in 32 countries worldwide. Endophytic fungi were characterized by high-throughput sequencing of 352 samples from 145 tree species in 28 countries. Insects were reared from 227 samples of 109 tree species in 18 countries and sorted into taxonomic orders and feeding guilds. Herbivorous insects were grouped into morphospecies and were identified using molecular and morphological approaches. This dataset reveals the diversity of tree-associated taxa, as it contains 12,721 fungal Amplicon Sequence Variants and 208 herbivorous insect morphospecies, sampled across broad geographic and climatic gradients and for many tree species. This dataset will facilitate applied and fundamental studies on the distribution of fungal endophytes and insects in trees.

Knowledge on Colombian insects and arachnids: a bibliometric approach

ABSTRACT Despite Arthropoda being a major animal taxon, it is underrepresented in South American scientific publications. Here, we present the results of a bibliometric analysis of published studies on insects and arachnids in Colombia to understand the general patterns of knowledge of both taxa across this megadiverse country. We compiled 3119 studies on insects and 353 on arachnids published between 1918 and 2019 in more than 600 journals. Research on both insects and arachnids reflects the effort done by researchers working in Colombian institutions, but because publications are mainly domestic, their international impact is limited. The studies included 19 taxonomic orders of insects and 72 families of arachnids with a bias toward a few well-studied taxa like Diptera, Lepidoptera, Hymenoptera, Araneidae, and Salticidae, while the majority of taxa are understudied. The geographic coverage of the studies was broad and includes Colombia’s 32 departments, but their distribution was heterogeneous being the Andean region the most studied, while the Caribbean and Orinoquia regions could be considered knowledge gaps. Considering our analysis, we give recommendations to expand and advance the knowledge of Colombian insects and arachnids, a major scientific enterprise in which collaboration among researchers from different institutions is needed.

Taxonomy Classification using Genomic Footprint of Mitochondrial Sequences.

Advancement in sequencing technology yields a huge number of genomes from a multitude of organisms on our planet. One of the fundamental tasks for processing and analyzing these sequences is to organize them in the existing taxonomic orders. Recently, we proposed a novel approach, GenFooT, for taxonomy classification using the concept of genomic footprint (GFP). The technique is further refined and enhanced in this work leading to improved accuracies in the task of taxonomic classification based on various benchmark datasets. GenFooT maps a genome sequence in a 2D coordinate space and extracts features from that representation. It uses two hyper-parameters, namely block size and number of fragments of genomic sequence while computing the feature. In this work, we propose an analysis of choosing values of those parameters adaptively from the sequences. The enhanced version of GenFooT is named GenFooT2. We have tested GenFooT2 on ten different biological datasets of genomic sequences of various organisms belonging to different taxonomy ranks. Our experimental results indicate a 3% improved classification performance of the proposed GenFooT2 featured with a Logistic regression classifier as compared to GenFooT. We also performed the statistical test to compare the performance of GenFooT2 to the state-of-the-art methods including our previous method, GenFooT. The experimental results as well as the statistical test exhibit that the performance of the proposed GenFooT2 is significantly better.

Metabarcoding of canopy arthropods reveals negative impacts of forestry insecticides on community structure across multiple taxa

Abstract Insecticides used to combat outbreaks of forest defoliators can adversely affect non‐target arthropods. Forestry insecticides typically suppress Lepidoptera larvae which are the cornerstone of the canopy community of deciduous oak forests. The abrupt removal of this dominant component of the food web could have far‐reaching implications for forest ecosystems, yet it is rarely investigated in practice owing to several methodological shortcomings. The taxonomic impediment and the biased nature of arthropod sampling techniques particularly impede the assessment of insecticide impacts on diverse communities. To tackle this issue, we propose an experimental approach combining sampling by pyrethrum knockdown and species determination via DNA metabarcoding, using community subsampling to derive estimates of species abundances. We applied this protocol to investigate the short‐term effects of the insecticides diflubenzuron (DFB) and Bacillus thuringiensis var. kurstaki (BTK) on canopy‐dwelling arthropod communities in German oak woodlands. Our approach allowed us to detect most of the diversity and integrate species abundances in our analyses. By classifying arthropod species into assemblages based on their expected sensitivity rather than coarse taxonomic groupings, we could unveil substantial effects of DFB across multiple taxa 5 weeks after application. Although strong effects on single species appear related to direct toxicity, substantial impacts of DFB on parasitoids and xylophagous beetles suggest that anti‐defoliator treatments can have previously unsuspected indirect effects on some components of forest arthropod communities. The impacts of BTK on community structure were consistent with that of DFB though much weaker. Synthesis and applications. Comparing diversity patterns in the arthropod communities of sprayed and unsprayed oak canopies, our results show that selective insecticides can alter species diversity in presumably non‐sensitive taxa. Even though the ecological significance of these impacts has yet to be assessed in an operational setting, their existence calls for increased regulatory scrutiny on indirect effects. As community approaches become more attainable with the rapid development of DNA metabarcoding, we suggest the inclusion of community‐level end points as regulatory requirements for the approval of forest‐use insecticides.

Impervious surface and local abiotic conditions influence arthropod communities within urban greenspaces.

The abundance of arthropods is declining globally, and human-modification of natural habitat is a primary driver of these declines. Arthropod declines are concerning because arthropods mediate critical ecosystem functions, and sustained declines may lead to cascading trophic effects. There is growing evidence that properly managed urban environments can provide refugium to arthropods, but few cities have examined arthropods within urban greenspaces to evaluate their management efforts. In this study, we surveyed arthropod communities within a medium-sized, growing city. We investigated arthropod communities (abundance, richness, diversity, community composition) within 16 urban greenspaces across metropolitan Grand Rapids, Michigan (USA). We focused our efforts on urban gardens and pocket prairies, and measured environmental variables at each site. We collected 5,468 individual arthropods that spanned 14 taxonomic orders and 66 morphospecies. The results showed that community composition was influenced by impervious surface, white flower abundance, and humidity. Total arthropod abundance and diversity were positively associated with humidity. For specific orders, Hymenoptera (bees, ants, wasps) abundance was negatively associated with temperature, and positively associated with site perimeter-area ratio. Hemiptera (true bugs) were negatively associated with impervious surface and positively associated with humidity. These findings show that impervious surfaces impact arthropod communities, but many of the observed changes were driven by local abiotic conditions like temperature and humidity. This suggests that management decisions within urban greenspaces are important in determining the structure of arthropod communities. Future studies on arthropods in cities should determine whether manipulating the abiotic conditions of urban greenspaces influences the composition of arthropod communities. These results should inform city planners and homeowners of the need to properly manage urban greenspaces in cities to maintain diverse arthropod assemblages.

Self-Organized Cultural Cycles and the Uncertainty of Archaeological Thought

Contributing to the issue of complex relationship between social and cultural evolution, this paper aims to analyze repetitive patterns, or cycles, in the development of material culture. Our analysis focuses on culture change associated with sociopolitical and economic stasis. The proposed toy model describes the cyclical character of the quantitative and qualitative composition of archaeological assemblages, which include hierarchically organized cultural traits. Cycles sequentially process the stages of unification, diversity, and return to unification. This complex dynamic behavior is caused by the ratio between cultural traits’ replication rate and the proportion of traits of the higher taxonomic order’s related unit. Our approach identifies a shift from conformist to anti-conformist transmission, corresponding with open and closed phases in cultural evolution in respect to the introduction of innovations. The model also describes the dependence of a probability for horizontal transmission upon orders of taxonomic hierarchy during open phases. The obtained results are indicative for gradual cultural evolution at the low orders of taxonomic hierarchy and punctuated evolution at its high orders. The similarity of the model outcomes to the patters of material culture change reflecting societal transformations enables discussions around the uncertainty of explanation in archaeology and anthropology.

Airborne environmental DNA for terrestrial vertebrate community monitoring

SummaryBiodiversity monitoring at the community scale is a critical element of assessing and studying species distributions, ecology, diversity, and movements, and it is key to understanding and tracking environmental and anthropogenic effects on natural ecosystems.1, 2, 3, 4 Vertebrates in terrestrial ecosystems are experiencing extinctions and declines in both population numbers and sizes due to increasing threats from human activities and environmental change.5, 6, 7, 8 Terrestrial vertebrate monitoring using existing methods is generally costly and laborious, and although environmental DNA (eDNA) is becoming the tool of choice to assess biodiversity, few sample types effectively capture terrestrial vertebrate diversity. We hypothesized that eDNA captured from air could allow straightforward collection and characterization of terrestrial vertebrate communities. We filtered air at three localities in the Copenhagen Zoo: a stable, outside between the outdoor enclosures, and in the Rainforest House. Through metabarcoding of airborne eDNA, we detected 49 vertebrate species spanning 26 orders and 37 families: 30 mammal, 13 bird, 4 fish, 1 amphibian, and 1 reptile species. These spanned animals kept at the zoo, species occurring in the zoo surroundings, and species used as feed in the zoo. The detected species comprise a range of taxonomic orders and families, sizes, behaviors, and abundances. We found shorter distance to the air sampling device and higher animal biomass to increase the probability of detection. We hereby show that airborne eDNA can offer a fundamentally new way of studying and monitoring terrestrial communities.

Using the VEMCO Positioning System (VPS) to explore fine-scale movements of aquatic species: applications, analytical approaches and future directions

Recent advancements in telemetry have redefined our ability to quantify the fine-scale movements of aquatic animals and derive a mechanistic understanding of movement behaviours. The VEMCO Positioning System (VPS) is a fine-scale commercial positioning system used to generate highly accurate semi-continuous animal tracks. To date, VPS has been used to study 86 species, spanning 25 taxonomic orders. It has provided fine-scale movement data for critical life stages, from tracking day-old turtle hatchlings on their first foray into the sea to adult fish returning to natal rivers to spawn. These high-resolution tracking data have improved our understanding of the movements of species across environmental gradients within rivers, estuaries and oceans, including species of conservation concern and commercial value. Existing VPS applications range from quantifying spatio-temporal aspects of animal space use and key aspects of ecology, such as rate of movement and resource use, to higher-order processes such as interactions among individuals and species. Analytical approaches have seen a move towards techniques that incorporate error frameworks such as autocorrelated kernel density estimators for home range calculations. VPS technology has the potential to bridge gaps in our fundamental understanding of fine-scale ecological and physiological processes for single and multi-species studies under natural conditions. Through a systematic review of the VPS literature, we focus on 4 principle topics: the diversity of species studied, current ecological and ecophysiological applications and data analysis techniques, and we highlight future frontiers of exploration.

Do fungal spore morphological traits correlate with allergenicity?

Fungal spores, like pollen, are identified as sources of allergens, yet fungal spore morphology, unlike pollen morphology, has not been correlated with allergenicity. In this study, we listed allergenic fungi reported from published literature and gathered information about their spore morphologies including the species’ lifestyle, the ability to produce mycotoxins, and the types of hypersensitivity reactions they induced. We tested the association of these spore traits with the hypersensitivity reaction through correspondence analysis with Chisquare as the measure of distance. Our research listed a total of 158 species of allergenic fungi belonging to 82 genera and 30 taxonomic orders. Most of the species (n = 122) elicited a Type I hypersensitivity reaction while 33 species had more than one hypersensitivity type (Types I-III-IV). The most common allergenic fungi belong to the genus Alternaria (41 species). Two fungal taxa commonly found in spoiled food, Penicillium (9 species) and Aspergillus (8 species), were also listed as allergenic. We did not find any strong correlation between allergenic reaction with the following spore traits: shape, texture, color, size, appendages, and with the type of spores, presence of mycotoxins, and the species lifestyle. However, spore length and width were positively associated with hypersensitivity reaction. Allergenic fungi with short and/or narrow spores can likely cause multiple types of hypersensitivity reactions while fungi with large and/or wide spores can induce either Type I or Type III hypersensitivity reaction. Our research study provides interesting insights into the role of fungal spore morphologies in human allergenicity.

Die Verzeitlichung des musikalischen Wissens um 1800. Von der Taxonomie der Klänge zum tonalen Bewusstsein

Kant’s verdict that music, as a transitory art form, is incapable of adequately occupying the mind, and Hegel’s definition of music as the language of subjective inwardness (Innerlichkeit) and consciousness exemplify the process of re-evaluation of music in philosophical discourse at the end of the 18th century and in the early 19th century. This corresponds to a paradigm shift in European cultural history which is described respectively as “Temporalisierung des Wissens” (Reinhart Koselleck), “ästhetische Wende” (Hans Robert Jauß), “historicité des êtres” (Michel Foucault) or “Krise des hermeneutischen Feldes” (Hans Ulrich Gumbrecht). In music-theoretical discourse, the hypothesis of a temporalization of knowledge is a topic that seems to correspond to the classic research fields of Foucault, Wolf Lepenies and Koselleck. According to Foucault, the order of representation is based on the transparent relationship between the poles of object and representation. In the tradition of the thorough-bass treatises of the late 17th and 18th century, the so-called règle de l’octave establishes a clear relation between the bass notes and the chords which are built on them. For this purpose, the règle provides a taxonomic order of chords on the basis of their structure, assigning them to corresponding grades of the major and minor scale. Toward the end of the 18th century, the idea that tonality is a “feeling”, that is, a product of the consciousness, appears in music-theoretic treatises. Here, the transparency of the representational order is questioned by the activation of a perceiving subject. This confirms the thesis that both the order of representation and the episteme of historicity can be traced in the development of music-theoretic discourse from the practice of thorough-bass to the harmonic theories of the 19th century. Such an analysis, however, should not be confused with a history of music theory or with a history of ideas. Rather, it shows how epistemological premises influence ideas and cultures.

Arthropod diversity and abundance in sugarcane germplasm at Kannur, India

The diversity and abundance of terrestrial arthropod fauna were assessed in sugarcane germplasm collection maintained in a crop-island scenario in the heartland of the Kannur district, Kerala State, India. A total of 523 invertebrates belonging to ten taxonomic orders viz., Orthoptera, Coleoptera, Diptera, Hemiptera, Hymenoptera, Lepidoptera, Odonata, Blattodea, Mantodea and Araneae were recorded in the study. In terms of abundance, Hymenoptera recorded the highest constituting 21.41% of all individual morpho-species recorded, followed by the Coleoptera with 20.84% and Hemiptera with 19.50%. Arthropod richness across crop assemblages revealed that various crop assemblages tend to support specific arthropod groups in greater abundance. The mean arthropod taxa diversity per week differed significantly between different crop assemblages and there was a considerable level of decrease in number in the post man-made disturbance scenario. In both pre and post-man-made disturbance scenarios, the highest mean arthropod per week was recorded in the blocks of Saccharum officinarum followed by the blocks of foreign hybrids, Saccharum species complex and Indian hybrids block. The Shannon index value ranged from 1.86 to 2.12. The highest diversity (H’=2.12) of communities was found in the block of foreign hybrid crop assemblage whereas lowest diversity (H’= 1.86) was recorded in the Saccharum species complex. The Simpsons index complemented the results of Shannon index. Importantly, the man-made disturbance had contributed negatively to the community diversity in the crop assemblages. In a pair-wise comparison measured through Jaccard’s Index revealed that crop assemblages had expressed considerable differences in the community and diversity among them in both pre and post man-made disturbance scenarios.

Using proximal sensors to assess pedogenetic development of Inceptisols and Oxisols in Brazil

Proximal sensors like portable the X-ray fluorescence (pXRF) spectrometer, visible and near-infrared spectrometer (Vis-NIR) and magnetic susceptibilimeter have been increasingly used for the acquisition of complementary data to investigate chemical, physical and mineralogical properties of soils. Through the association between these sensors, this study aims to differentiate classes of soils with similar pedogenetic development, but developed from different parent materials. Four soil profiles were described and sampled in Lavras, Minas Gerais, Brazil: Oxic Dystrustept and Anionic Acrudox, developed from gabbro and Typic Dystrustept and Rhodic Hapludox, developed from gneiss. Samples from the A, B and C horizons were subjected to analyses by pXRF, Vis-NIR, and magnetic susceptibility, in additon to their physicochemical characterization and determination of their mineralogy via X-ray diffraction (XRD). The contents of Si, Fe and Ti obtained by pXRF as well as the MS values were decisive in distinguishing soil classes according to the parent material. The spectral curves generated by Vis-NIR showed different spectral responses for the same soil class due to their differential mineralogical constitution. Soils developed from gabbro had higher contents of iron oxides and a low reflectance in relation to the soils developed from gneiss. The proximal sensors contributed to the differentialtion of soil properties both within soils developed from the same parent material, mainly expressing their different weathering degrees, and within soils of the same taxonomic order, but developed from distinct parent materials. These proximal sensors can improve the characterization of soils and evaluations about their genesis at reduced time and costs.

Effects of artificial light on bird movement and distribution: a systematic map

BackgroundArtificial light is ubiquitous in the built environment with many known or suspected impacts on birds. Birds flying at night are known to aggregate around artificial light and collide with illuminated objects, which may result from attraction and/or disorientation. In other contexts, birds are repelled by light-based deterrents, including lasers and spotlights. Artificial light can also change birds’ perceptions of habitat quality, resulting in selection or avoidance of illuminated areas. Studies documenting aggregation, deterrence, and habitat selection are typically considered separate literature bodies, but they actually study a common set of populations, interventions/exposures, and responses. Our systematic map provides a comprehensive, searchable database of evidence of the effects of artificial light on bird movement and distribution, increasing both the quantity and diversity of studies that are accessible for further comparison and synthesis. We identify and describe the evidence available for four secondary questions relevant to conservation or management: aggregation/mortality at structures with artificial lights, evidence that light attracts and/or disorients birds, light-based deterrent efficacy, and the influence of continuous illumination on habitat selection.MethodsUsing the principles of systematic reviews and methods published in an earlier protocol, we conducted an extensive and interdisciplinary literature search. We searched multidisciplinary citation indices as well as databases and websites specific to conservation, pest management, transportation, and energy. In our map, we included all studies reporting eligible populations (birds), interventions/exposures (artificial light), and outcomes (movement through space, behaviour preceding movement, or distribution). We evaluated the quantity of available evidence based on meta-data fields related to study context, population traits, light source characteristics, and outcome variables. We used these meta-data to identify relevant evidence for each secondary question and describe aspects of our secondary questions that may support reviews (evidence clusters) and others that require more research (knowledge gaps).Review findingsWe manually screened 26,208 articles and coded meta-data for 490 eligible studies in a searchable database, organizing the literature to facilitate future reviews and evidence-based management. Much of the evidence was concentrated in particular locations (Northern hemisphere), taxonomic orders (Passeriformes, Charadriiformes, and others), and light wavelengths (red and white). We identified 56 distinct response variables and organized them into 3 categories (behaviour, distribution, and avian community), showing the diversity in bird responses to light.ConclusionsOur database can be used to answer the secondary questions we identified and other questions about the effects of artificial light on bird movement and resulting changes to distribution. There may be sufficient evidence for a review of the weather and lunar conditions associated with collisions, which could help identify nights when reduction of artificial light is most important. Further experiments should investigate whether specific types of light can reduce collisions by increasing the detectability of structures with artificial lights. The efficacy of lasers as deterrents could be evaluated through systematic review, though more studies are needed for UV/violet lasers. To reduce the impacts of outdoor lighting on birds, research should investigate how spectral composition of white light influences bird attraction, orientation, and habitat selection.