Taxonomic Clarification Research Articles

Xanthomonas Strains Isolated from Hosts in the Family Araceae Reveal Diverse Phylogenetic Relationships and Origins.

The family Araceae, comprising ornamentals including Anthurium, Dieffenbachia, Philodendron, Colocasia, and Zantedeschia, is susceptible to Xanthomonas pathogens. Previous analyses have established heterogeneity in aroid strains, yet unresolved taxonomic positions and dynamics between Xanthomonas and frequently associated Stenotrophomonas in aroids necessitate in-depth genetic investigation to resolve these complex relationships. This study utilized multilocus sequence analysis of housekeeping genes atpD, dnaA, dnaK, gltA, and gyrB to investigate 59 aroid strains, selected based on hosts, time, and geographical origins. After adding sequences from additional strains from NCBI GenBank, analysis of 161 concatenated sequences indicated that all aroid strains fell within Xanthomonas and Stenotrophomonas. Thirty-six strains isolated from Anthurium grouped under X. phaseoli, with outliers including one strain each in X. arboricola and X. sacchari and two in Stenotrophomonas. Six strains from Caladium, Dieffenbachia, and Philodendron formed host-specific subgroups within X. euvesicatoria. One strain from Dieffenbachia aligned with X. campestris, whereas strains from Colocasia, Aglaonema, and Spathiphyllum clustered with X. sacchari. Apart from the zantedeschia strain described as X. arboricola pv. zantedeschiae, two colocasia, one epipremnum, and one anthurium strain joined the X. arboricola group. Overall, this study revealed significant heterogeneity among aroid strains, with anthurium strains clustering closely despite distant geographical origins. The analysis underscores the complexity of host-pathogen specificity within Xanthomonas and emphasizes the need for further taxonomic clarification through whole-genome analysis of representative strains. The findings of this research will facilitate strain selection for inclusivity and exclusivity panels in developing diagnostic assays for X. phaseoli and xanthomonads affecting aroids.

Re-discovery and taxonomic clarification of Oreocharisleveilleana (Gesneriaceae) in Guizhou, China, over 100 years.

Oreocharisleveilleana Fedde was collected in Ta-pin in 1910 and published in 1911. The collected location was verified within western Luodian County, Guizhou Province, China. However, there have been no records of the species' collection for more than 100 years since then. After extensive investigations by our research team on the type locality and its surrounding areas, we found that it is widely distributed in western Luodian County and eastern Wangmo County, Guizhou Province, China. During further research on the original literature, type specimens and type locality of O.leveilleana, the taxonomic position of O.leveilleana, which was once treated as a synonym of O.auricula (S.Moore) C.B.Clarke, was found to have a taxonomic problem. Through morphological research combined with geographical distribution analysis, it has been determined that it should belong to the genus Petrocodon Hance and it is the same species as P.coccineus (C.Y.Wu ex H.W.Li) Yin Z.Wang. According to the regulations and suggestions of the 2018 "International Code of Nomenclature for Algae, Fungi, and Plants (Shenzhen Code)", we propose and confirm a new combination - Petrocodonleveilleanus (Fedde) X.X.Bai & F.Wen and treat P.coccineus as a synonym of the new combination. Due to its unique bright red flowers within Petrocodon, its original Chinese name has been retained.

Reestablishment of Zamia lawsoniana (Zamiaceae, Cycadales), an endemic species of Mexico, with first description of the ovulate strobilus

Background and Aims: Zamia, with 86 species, is the most diverse Neotropical cycad genus. In Mexico, 18 species occur, of which 15 are endemics. These taxa are distributed from sea level to 1200 m a.s.l. Recently, the phenology of Zamia in wild populations from southern Veracruz and Tabasco was studied to evaluate the morphological patterns of reproductive structures. While these records have been considered as Z. loddigesii, a species with a wide distribution along the Gulf of Mexico, different populations do possess morphological differences. Based on these data, we reevaluated the synonymy of Z. lawsoniana, which was described in 1884 and synonymized with Z. loddigesii in 1995. Methods: Botanical material was collected from three populations in Tabasco, ten in Veracruz and two in Oaxaca previously considered part of Z. loddigesii. Reproductive structures were measured at maturity in habitat. Populations were visited during 2022 and 2023 to record reproductive phenology. Herbarium specimens of Zamia lawsoniana and morphologically similar species (Z. loddigesii, Z. spartea and Z. stenophyllidia) were examined. A morphological description and an illustration for Z. lawsoniana were prepared. In addition, an identification key that included related species in terms of morphology, geography and phylogenetics was made. Key results: Zamia lawsoniana is removed from synonymy and some taxonomic clarifications are made. In this context, we provide a complete description of pollen strobili, including the microsporophylls, range of vegetative morphological variation, and a botanical illustration. Additionally, the ovulate strobilus is described for the first time and a preliminary conservation status is proposed. Conclusions: Based on morphological evidence of reproductive structures and vegetative characters, we propose the reestablishment of Zamia lawsoniana and its removal from synonymy with Z. loddigesii.

Intraspecific diversity of Meriones persicus (Rodentia; Gerbillinae), the main plague reservoir in Iran, and its connection to enzootic plague in Iran.

Plague, a lethal zoonotic disease, primarily circulates within rodent populations and their fleas. In Iran, the widely distributed jird, Meriones persicus, serves as the principal reservoir for plague, with a belief in the existence of five out of its six recognized subspecies within the country. However, these subspecies are classified into four mitochondrial cytochrome b sub-lineages (IA, IB, IIA, IIB). This discrepancy, combined with the presence of an unnamed sub-lineage in central Iran awaiting taxonomic clarification, has left intraspecific taxonomy unsettled and obscured the true alignment between mtDNA sub-lineages and nominal subspecies. In this study, we investigated the intraspecific variation in the cytb gene across populations sampled throughout Iran, focusing on underexplored regions between the Zagros and Alborz Mountains and central Iran. While our genetic data generally support reported subspecies validity in Iran, we raise questions about M. p. baptistae, emphasizing the need for further data from its type territory in Pakistan. Two main lineages of M. persicus (I and II) exhibit geographical isolation, with limited overlap in the central Zagros Mts., where three subspecies (M. p. ambrosius, M. p. rossicus, and M. p. persicus) coexist. Superimposing infected rodents' geographic coordinates onto updated sub-lineages' distribution revealed a potential association between sub-lineage IA (M. p. rossicus) and all enzootic plague cases from 1946 to 2023. M. persicus rossicus extends into the Caucasus (where plague infections are common), Eastern Turkey, and Iraq. Consequently, interpreting this finding in the context of plague surveillance in Iran and neighboring areas requires caution.

Taxonomy, ontogeny, and ecology of Tonnacypris stewarti (Daday 1908) comb. nov. (Ostracoda: Cyprididae) from Nam Co, Tibetan Plateau.

Taxonomic clarification of Tonnacypris stewarti comb. nov. (= Herpetocypris stewarti), a non-marine ostracod first described by Daday in 1908, was required due to the existence of various synonyms without detailed morphological descriptions. Our study examined specimens from Mang-tsa, Nam Co (Tibetan Plateau) and Lake Band-e Amir (Afghanistan). We identified seven definitive synonyms (Herpetocypris stewarti Daday 1908, Ilyodromus estonicus Järvekülg 1960, Eucypris afghanistanensis Hartmann 1964, E. gyirongensis Yang 1982, E. rischtanica Schneider 1963 in Mandelstam & Schneider 1963, Tonnacypris estonica (Järvekülg 1960), and T. gyirongensis (Guo et al. 2016). After a detailed study of the morphology of valves and soft parts supplemented by a literature review, we propose combining the genus Tonnacypris with the specific epithet stewarti, resulting in the new name Tonnacypris stewarti. We documented the ontogenetic series of T. stewarti in surface sediment samples from Nam Co. Only female specimens were found, consistent with observations in Mongolia, where they were considered asexual populations. Sexual populations were reported from Afghanistan and the southern Tibetan Plateau, suggesting geographic parthenogenesis in the Palearctic region. Because of widely missing males, we explored the use of female genital lobes as a distinguishing feature for taxonomy. Considering current ecological knowledge, T. stewarti could serve as a (paleo)-bioindicator of cold, oligotrophic, and fresh to slightly brackish habitats, including rivers, lagoons, and lakes. This study emphasizes the importance of resolving taxonomic issues for future paleolimnological research. Moreover, our investigation highlights the potential use of sclerotized internal female genital lobes as distinctive characteristics for species differentiation, especially in asexual populations.

Oxytoxaceae are prorocentralean rather than peridinialean dinophytes and taxonomic clarification of heterotrophic Oxytoxum lohmannii (≡ “Amphidinium” crassum) by epitypification

During evolution of Dinophyceae, size reduction of the episome has occurred in several lineages (including unarmoured Amphidiniales and armoured Prorocentrales). One such species is Amphidinium crassum, whose taxonomic identity is elusive though showing morphological similarities with Oxytoxaceae (currently placed in armoured Peridiniales). Plankton samples were taken at the type locality of A. crassum in Kiel Bight (Baltic Sea) in order to establish monoclonal strains. The protist material was examined in detail using light and electron microscopy, and a long (2984 bp) ribosomal RNA sequence gained was part of a taxon sample comprising 206 specimen vouchers and representing the known molecular diversity of Dinophyceae. Cells of A. crassum were ovoid and exhibited a plate pattern po, 4′, 1a, 6′′, 5c, 4s, 5′′′, 1′′′′. In the molecular phylogeny, the species seemed to belong neither to Amphidiniales nor to Peridiniales but to Prorocentrales and clustered with other representatives of Oxytoxaceae. The morphological diversity of Prorocentrales appears thus expanded, and the group may include a number of previously unrecognised representatives unusually having five postcingular and only a single antapical plate. The taxonomic identity of A. crassum is clarified by epitypification, and the species notably exhibits both an apical pore and an additional epithecal pore.

Comparative and phylogenetic analyses based on the complete chloroplast genome of Cornus subg. Syncarpea (Cornaceae) species.

This study presents a comprehensive analysis of the chloroplast (cp) genomes of Cornus species, including comparative and phylogenetic evaluations, as well as examinations of their genomic structure and composition. The cp genomes exhibit a typical circular quadripartite structure and demonstrate highly similar gene order and genomic structure. The complete cp genome size of the 10 taxa in this study is 156,965 bp to 157,383 bp, where the length of the large single-copy (LSC) region is 86,296 bp to 86,691 bp, small single-copy (SSC) region is 18,386 bp to 18,454 bp, and inverted repeat (IR) region is 23,143 bp to 26,112 bp. A total of 131 genes were found, including 86 protein-coding genes (PCGs), eight rRNA genes, and 37 tRNA genes. The mean GC content of the 10 taxa is 38.145%, where the LSC region is 36.396%, the SSC region is 32.372%, and the IR region is 43.076%. Despite the relatively conserved nature of the cp genome within the species of Cornus, 25-31 simple sequence repeats (SSRs) were identified in the 10 taxa in our study. The SSRs were found to be distributed in the LSC, SSC, and IR regions in Cornus hongkongensis subsp. hongkongensis, C. hongkongensis subsp. elegans, C. hongkongensis subsp. gigantea, and C. hongkongensis subsp. tonkinensis, while the SSR was not found in the IR region of the other six taxa. Thus, whole cp genomics is a valuable tool for species identification, taxonomic clarification, and genomic evolutionary analysis. Furthermore, our findings reveal that C. hongkongensis and C. hongkongensis subsp. gigantea, along with Cornus kousa and Cornus elliptica, form sister groups. Notably, C. hongkongensis subsp. ferruginea and C. hongkongensis subsp. melanotricha did not exhibit affinity with C. hongkongensis subsp. hongkongensis. Our study furnishes essential data for further research on their classification and provides novel insights into the relationship within Cornus subg. Syncarpea.

Holoparasitic Orobanchaceae in Georgia (Caucasus): taxonomic revision, diversity, distribution, habitats and host range

This study represents the first comprehensive monograph of the tribe Orobancheae (Orobanchaceae) in the four holoparasitic genera, Cistanche, Phelypaea, Phelipanche, and Orobanche, in Georgia. This country, as a part of the Caucasus, is one of the most important biodiversity centres in the world and includes poorly understood holoparasitic plants. Species delimitations are re-evaluated on the basis of critical observations on seven years of field work and examination of ca. 1000 herbarium sheets from 50 herbaria. Our work has resulted in the recognition of 33 species, among which 13 are endemic to the Caucasus. We present information on their distribution, localities, habitat, phenology, host range, images from the field, nomenclatural acts (taxonomic clarifications, proposals for new synonymisations, new combinations, lectotypifications), as well as a key for identification and preliminary geospatial conservation assessments for all species based on IUCN criteria. Lectotypes are designated for Cistanche fissa, C. sintenisii, Orobanche salsa var. ambigua f. fissa, O. salsa var. ambigua f. longiloba, O. coelestis f. confinis, O. ramosa var. penicillata, O. coerulescens, O. buhsei, O. glabrata, O. minor, O. libanotidis, O. flava; neotype for O. owerinii; nomenclatural novelties, new combinations and/or a name at new rank: O. doriae, Orobanche subg. Gamosepalae, Orobanche sect. Arcuatae.

Genetic Diversity and Phylogeography of Taenioides cirratus in Five Geographical Populations Based on Mitochondrial COI and Cytb Gene Sequences

The genetic diversity of Taenioides cirratus was investigated on the basis of mitochondrial cytochrome c oxidase subunit I (COI) and cytochrome b (Cytb) gene sequences. A total of 159 specimens collected from the Chaohu Lake (CL), Nansihu Lake (NL), Taihu Lake (TL), Pearl River (PR), and Nandu River (NR) were sequenced. The total length of the sequence was 2485 bp with 412 polymorphic sites. A total of 73 haplotypes were identified, with Hap1 being the most widely distributed. The PR and NR populations showed high genetic diversity, while the CL population showed low genetic diversity. TL and NL showed high haplotype diversity but low nucleotide diversity. The analysis of molecular variance demonstrated that the sequence variations were mainly occurred among populations. T. cirratus populations are declining, and rare alleles are present at low frequencies, as analysed using a neutral test and a mismatched distribution analysis. There was a relatively high level of genetic differentiation among the populations of the Yangtze River basin (including NL), PR, and NR (Fst > 0.15). The two similar phylogenetic trees constructed by the maximum likelihood (ML) and Bayesian inference (BI) methods presented three major lineages, of which lineage II contains haplotypes from PR and NR, lineage III contains haplotypes from CL, NL, TL, and PR, whereas lineage I contains only a portion of haplotypes from NR. Based on the neutral test, mismatch analysis, and Bayesian Skyline Plot (BSP), geological and climatic events were inferred to have played an important role in the historical dynamics of T. cirratus population. Hap1, Hap25, and Hap58 were inferred as possible ancestral haplotypes by network analysis. Our study offers an essential foundation for resource preservation and additional taxonomic clarification of T. cirratus.

First observations of Ruminapaivae Lowe, 1861 (Mollusca, Gastropoda) in the south-east of France, based on taxonomic clarifications.

Amongst the genus Rumina, R.paivae was decribed from North Africa for the first time by Lowe in 1861 on the basis of a limited number of samples. During the 19th and 20th centuries, it was described several times, under different names and different ranks leading to a taxonomic imbroglio before being forgotten. In 2002, Mienis rehabilitated R.paivae, but Prevot et al. (2013, 2014) considered it as a large phenotype of R.decollata Linnaeus (1758) on the basis of genetic and anatomical studies. In this study, we present morphological and anatomical comparisons and differences between two groups of shells collected in France and considered as R.decollata. Using seven morphological characters related to the size and one to the microscopic sculptures of the shell and two related to the eggs and the colours of the morphs, we attribute these two groups to two morphologically described species: R.paivae and R.decollata. We propose a way to easily distinguish them from each other. With regard to their distribution, morphology and genetics, we discuss their relative systematic position. Moreover, in this study, we report for the first time R.paivae, a given north African taxa, in the south-ast of France, in Marseille.

Taxonomic changes in the Lomentariaceae (Rhodymeniales, Rhodophyta): Yendoa gen. nov. and Ceratodictyon sanctae-crucis sp. nov.

ABSTRACT The Lomentariaceae, previously treated as subfamily Lomentarioideae in the family Champiaceae, is one of the six families currently classified in the Rhodymeniales. Relationships within the family are not well-established, and new genera have been segregated from Lomentaria, a notoriously polyphyletic taxon as currently circumscribed. The lack of access to molecular data of type specimens has limited the taxonomic clarifications within the Lomentariaceae. Using new collections from Brazil, historical collections and data available in GenBank, we generated rbcL and COI-5P phylogenies of the Lomentariaceae, and we used species delimitation methods to assess the species-level diversity among sequences. A nuclear LSU rDNA phylogeny, although less representative in number of taxa, confirmed our findings. Our results recovered Ceratodictyon and Semnocarpa as monophyletic, whereas Lomentaria was polyphyletic. Integrating phylogenetic analyses, analyses of genetic variance, and morphological analyses, we revealed a new species, Ceratodictyon sanctae-crucis sp. nov., collected on the coast of Bahia (northeastern Brazil). Having included a newly generated sequence of the holotype of Lomentaria sinensis, a heterotypic synonym of L. hakodatensis, and a sequence from a sample collected near the type locality of L. hakodatensis, we propose the new genus Yendoa gen. nov. to accommodate this species. Our results support a more phylogenetically coherent taxonomic scheme for the Lomentariaceae, which now includes only monophyletic genera.

Importance of type specimen study for understanding genus boundaries—taxonomic clarifications in Lepidoderma based on integrative taxonomy approach leading to resurrection of the old genus Polyschismium

ABSTRACT Type specimens of four species of Lepidoderma (Myxomycetes, Amoebozoa)—L. crassipes, L. neoperforatum, L. perforatum, and L. stipitatum—have been studied using an integrative approach including application of traditional taxonomy methods, i.e., morphological study under stereoscopic and compound microscopes, detailed analysis of micromorphological characters using scanning electron microscopy, and molecular analysis by way of Sanger sequencing of molecular markers (nuc 18S rDNA and elongation factor 1-alpha gene, EF1A). Results of the study revealed that L. crassipes is conspecific with L. tigrinum, L. stipitatum is a malformed specimen of Diderma floriforme, whereas L. perforatum and L. neoperforatum represent two well-defined morphologically and genetically separate species. Phylogeny of Physarales shows the polyphyletic character of the genus Lepidoderma. The type species of Lepidoderma clusters together with Diderma, whereas other representatives of this genus form a monophyletic, well-supported clade. The species from this clade are proposed to belong to the genus Polyschismium described by A. Corda in 1842 that is resurrected and emended here. Nine species of Lepidoderma are transferred to Polyschismium. A new key to Didymiaceae including Polyschismium is provided.

Begonia cinnabarina (Begoniaceae): taxonomic clarifications, morphology and distribution; with emphasis on material from Argentina

The current work aims to expand the knowledge on Begonia cinnabarina in Argentina through a morphological description, data about its geographical distribution and habitat, including photos, line drawings, and a map. In addition, here it is provided a key to differentiate B. cinnabarina from morphologically similar species of northwestern Argentina.

The Sela macaque (Macaca selai) is a distinct phylogenetic species that evolved from the Arunachal macaque following allopatric speciation

Arunachal macaque (M. munzala) is an endangered and recently discovered cercopithecine primate from Western Arunachal Pradesh, India. On genetic analyses of Arunachal macaques, we observed spatially distributed substantial inter-species genetic divergence among the samples collected from Arunachal Pradesh. The results suggested that Arunachal macaque evolved into two phylogenetic species about 1.96 mya following allopatric speciation by means of Sela mountain pass in Arunachal Pradesh, India. We describe - Sela macaque (M. selai) as a new macaque species that interestingly exhibited high intra-specific genetic variation and also harbors at least two conservation units. Further, we report the past demographic trajectories and quantify genetic variation required for taxonomic clarification. The present study also identifies gap areas for undertaking surveys to document the relic and unknown trans-boundary populations of macaques through multinational, multi-lateral cross border collaboration.

The complete mitochondrial genome of carnivorous Genlisea tuberosa (Lentibulariaceae): Structure and evolutionary aspects

Sequenced genomic data for carnivorous plants are scarce, especially regarding the mitogenomes (MTs) and further studies are crucial to obtain a better understanding of the topic. In this study, we sequenced and characterized the mitochondrial genome of the tuberous carnivorous plant Genlisea tuberosa, being the first of its genus to be sequenced. The genome comprises 729,765 bp, encoding 80 identified genes of which 36 are protein-coding, 40 tRNA, four rRNA genes, and three pseudogenes. An intronic region from the cox1 gene was identified that encodes an endonuclease enzyme that is present in the other sequenced species of Lentibulariaceae. Chloroplast genes (pseudogene and complete) inserted in the MT genome were identified, showing possible horizontal transfer between organelles. In addition, 50 pairs of long repeats from 94 to 274 bp are present, possibly playing an important role in the maintenance of the MT genome. Phylogenetic analysis carried out with 34 coding mitochondrial genes corroborated the positioning of the species listed here within the family. The molecular dynamism in the mitogenome (e.g. the loss or pseudogenization of genes, insertion of foreign genes, the long repeats as well as accumulated mutations) may be reflections of the carnivorous lifestyle where a significant part of cellular energy was shifted for the adaptation of leaves into traps molding the mitochondrial DNA. The sequence and annotation of G. tuberosa's MT will be useful for further studies and serve as a model for evolutionary and taxonomic clarifications of the group as well as improving our comprehension of MT evolution.

Apport de la spectrométrie de masse Maldi-TOF pour identifier les dermatophytes

AbstractMaldi-TOF mass spectrometry represents a major technical advance and an alternative to the relatively laborious and complex identification of dermatophytes by macroscopic and microscopic morphology, which requires highly skilled mycologists, an expertise that is becoming scarce in medical analysis laboratories. Provided that the dermatophyte has been successfully isolated in culture and that an adequate (i.e., comprehensive and in keeping with the current nomenclature) Maldi-TOF mass spectrometry reference spectra database is available, Maldi-TOF MS is relatively cheaper and offers a comparable accuracy to that of DNA sequencing for the identification of dermatophytes. The use of this new identification tool is likely to support to the ongoing dermatophytes taxonomic clarification. The taxonomic clarification will further contribute to a better understanding of the epidemiology of dermatophytes and the impact of the species involved on the outcomes of patients with dermatophytoses.

Studies on type material from Kützing’s diatom collection V – two new synonyms of Ulnaria vitrea (Kützing) E. Reichardt: Synedra mesocampa Brébisson in Kützing and Synedra tenuis Kützing

This short paper discusses two new synonyms of Ulnaria vitrea: Synedra mesocampa Brébisson in Kützing and Synedra tenuis Kützing. The data generated herein are based on original material and form a contribution to the taxonomic clarification of species in the genus Ulnaria. Both names discussed have barely been noticed since their original description and then usually considered as synonyms of Ulnaria ulna. Some additional notes on other relevant names are included, such as Synedra putealis O’Meara and Synedra tenuis var. subtilis (Kützing) Brun.

Mitochondrial Differentiation and Biogeography of Rock Nuthatches

Rock Nuthatches comprise two morphologically similar species: Western Rock Nuthatch Sitta neumayer and Eastern Rock Nuthatch Sitta tephronota, with several subspecies within each species. These two species are closely related, and the two together are often considered an offshoot of the Sitta europaea group. The Western Rock Nuthatch is distributed across the Balkans to the Caucasus and Iran while the Eastern Rock Nuthatch is distributed across Eastern Anatolia, Iran, Afghanistan, Turkmenistan and Tajikistan. Using partial mitochondrial ND2 and ND3 gene sequences from populations throughout the distribution ranges and ecological niche modelling, we investigated the genetic structure and biogeographic history of these bird species. Two well-differentiated and supported clades in each species indicated a reciprocal monophyly with no gene flow between birds in the Zagros Mountains and other populations. Ecological niche modelling suggested population contraction in their potential habitat during the Last Glacial Maximum. The genetic differentiation in Zagros Mountains indicates that the post-glacial colonization of most of the Rock Nuthatch distribution range occurred from refugia located elsewhere than the Zagros Mountains. Given that Rock Nuthatches in the Zagros Mountains have long constituted an isolated population, there may be two phylogenetic species within each Rock Nuthatch species. Further genetic studies should be performed for taxonomic clarification.

Exhaustive reanalysis of barcode sequences from public repositories highlights ongoing misidentifications and impacts taxa diversity and distribution.

Accurate species identification often relies on public repositories to compare the barcode sequences of the investigated individual(s) with taxonomically assigned sequences. However, the accuracy of identifications in public repositories is often questionable, and the names originally given are rarely updated. For instance, species of the Sea Lettuce (Ulva spp.; Ulvophyceae, Ulvales, Ulvaceae) are frequently misidentified in public repositories, including herbaria and gene banks, making species identification based on traditional barcoding unreliable. We DNA barcoded 295 individual distromatic foliose strains of Ulva from the North-East Atlantic for three loci (rbcL, tufA, ITS1). Seven distinct species were found, and we compared our results with all worldwide Ulva spp. sequences present in the NCBI database for the three barcodes rbcL, tufA and the ITS1. Our results demonstrate a large degree of species misidentification, where we estimate that 24%-32% of the entries pertaining to foliose species are misannotated and provide an exhaustive list of NCBI sequences reannotations. An analysis of the global distribution of registered samples from foliose species also indicates possible geographical isolation for some species, and the absence of U.lactuca from Northern Europe. We extended our analytical framework to three other genera, Fucus, Porphyra and Pyropia and also identified erroneously labelled accessions and possibly new synonymies, albeit less than for Ulva spp. Altogether, exhaustive taxonomic clarification by aggregation of a library of barcode sequences highlights misannotations and delivers an improved representation of species diversity and distribution.

Taxonomic clarification and neotype designation of two Taiwanese salamanders (Amphibia, Urodela, Hynobiidae).

Taxonomic identification of two Taiwanese salamanders, Hynobius sonani (Maki, 1922), and H. formosanus Maki, 1922, was clarified. Based on the descriptions and measurement data in the original description, we confirmed that H. sonani has been treated as H. formosanus and vice versa, which might have been caused by confusion of sampling localities of the two species. Because we could not find the holotypes of the two species and concluded these were lost, we herein assign neotypes for these species for precluding future taxonomic confusion.