Taxonomic Placement Research Articles

Four new adelgid (Hemiptera: Adelgidae) species from Bhutan, including the first legless species of Aphidomorpha

A new subgenus and four new species of Adelges (Hemiptera: Adelgidae) are described from Bhutan. To support their taxonomic placement, we provide a phylogeny of Adelgidae reconstructed using mitochondrial and nuclear DNA sequence data. Cassiadelges subgen. nov is distinguished by the combination of feeding on Larix secondary hosts, having tergites of the head and pronotum fused into a cephaloprothoracic shield, and having only acuminate setae on the terminal abdominal segments. Adelges (Cassiadelges) coccipus sp. nov. feeds on Larix griffithii. This remarkable species is the only known member of Aphidomorpha that is lacking legs. The first instar nymph has legs, while the second instar to adult have vestigial legs present as small cuticular protrusions with clusters of setae. Its discovery presents an exciting opportunity to examine the evolutionary development of insect limb formation from a new perspective. Adelges (Cholodkovskya) changaphuensis sp. nov. feeds and forms galls on Picea spinulosa. Adelges (Aphrastasia) densae sp. nov. feeds on Abies densa. This may be the same as what was reported on this host in 1985 as Chermes abietispiceae Stebbing (nomen dubium). Adelges (Annandina) lepsimon sp. nov. feeds on Tsuga dumosa. It is separated from the only other member of its subgenus, Adelges (Annandina) tsugae Annand, by first instar exules having a pair of prominent anterior cephalic wax glands. It feeds between the needles on twigs in a similar fashion to A. (An.) tsugae Annand, which is also found in Bhutan, making it difficult to distinguish them in the field.

Pseudocercospora fengxinensis, a new species causing sooty spot of kiwifruit in China.

Pseudocercospora is a large cosmopolitan genus of plant pathogenic fungi that are commonly associated with leaf and fruit spots as well as blights on a wide range of plant hosts. P. actinidiae is a member of this genus, causing sooty spot on kiwifruit worldwide. With the expansion of kiwifruit cultivation, the incidence of sooty spot has become severe in Fengxin County, Jiangxi Province, China. Based on a survey conducted in 2022 across nine kiwifruit cultivars in six local orchards, the results showed that the disease incidence was higher in 'Donghong', 'Jinyan', 'Jinkui', 'Fenghuang No. 1' and 'Jinguo'. In contrast, it was lower in 'Gold3' and 'Hongshi No. 2'. No lesions were observed on 'Kuilv' and 'Miliang No. 1'. 31 fungal strains were isolated from infected leaves using single-spore isolation. Phylogenetic analysis of combined sequence data from the internal transcribed spacer region of ribosomal DNA (ITS), partial actin (actA), translation elongation factor 1-alpha (tef1), and the second largest subunit of RNA polymerase II (rpb2) sequence data, using maximum-likelihood (ML) and Bayesian inference (BI), revealed their taxonomic placement within Pseudocercospora. Both morphological and molecular phylogenetic analysis supported Pseudocercospora fengxinensis as a new taxon within Pseudocercospora. Pathogenicity tests confirmed P. fengxinensis as the causal agent of sooty spot on kiwifruit. This study is the first report of P. fengxinensis causing sooty spot of kiwifruit worldwide, enriching our understanding of Pseudocercospora diversity in China and providing a foundation for improved disease management strategies.

A new and distinctive species of Ceratina Latreille (Hymenoptera: Apidae) from Veracruz, Mexico

Ceratina Latreille is a cosmopolitan genus with around 380 described species, typically small in size and exhibiting primitive social structures; their habit of nesting in dry plant stems has earned them the common name of small carpenter bees. This work presents an addition to the diversity of the genus in Mexico, with the description of Ceratina valenzuelai sp. nov. from the cloud forest in centralVeracruz State. Only males are known, which are polymorphic, with some macrocephalic individuals, a rare trait among the New World Ceratina. Comments on its biology and taxonomic placement within the subgenus Ceratina (Calloceratina) are also included

Taxonomic novelty in Pleomonodictydaceae and new reports for Ampelomycesquisqualis (Phaeosphaeriaceae), Melomastiamaolanensis and M.oleae (Pleurotremataceae).

This study introduces a novel genus Robiniigena, with its type R.hyalinospora. The specimen was collected on dead aerial branches of Robiniapseudoacacia in Italy. Based on the examination of morphology and the results of phylogenetic analyses involving nuclear 18S rDNA (SSU), nuclear 28S rDNA (LSU), nuclear rDNA ITS1-5.8S-ITS2 (ITS), translation elongation factor 1-alpha (tef1-α) and RNA polymerase II second largest subunit (rpb2) sequences, Robiniigena is referred to the family Pleomonodictydaceae (Pleosporales). It is characterized by immersed to erumpent, ostiolate ascomata, filiform, septate and cellular pseudoparaphyses, bitunicate, clavate to cylindric-clavate asci and fusiform, hyaline ascospores surrounded by a mucilaginous sheath. This research also establishes the taxonomic placement of the previously unclassified Inflatispora (Pleosporales genus incertae sedis) within the Pleomonodictydaceae. The sexual morph of Ampelomycesquisqualis (Phaeosphaeriaceae) is described for the first time and it is characterized by immersed, perithecial ascomata, a peridium comprising two layers, branched, septate and filiform pseudoparaphyses, short-pedicellate, bitunicate asci with an ocular chamber and sub-hyaline, fusiform, septate ascospores. This species, previously known only in its asexual morph, has been found as a saprobe on Sonchus sp. in Italy. Our identification of the sexual morph was based on LSU rDNA and ITS rDNA sequence data. Melomastiamaolanensis (Pleurotremataceae) is reported for the first time in Thailand, collected from Chromolaenaodorata, while M.oleae is documented as a new record from Durantaerecta in Thailand.

Taxonomic revision of Siculodes Guenée and revalidation of Aziba Walker (Lepidoptera, Thyrididae, Siculodinae, Siculodini).

The taxonomy of Siculodes Guenée, 1858 and Aziba Walker, 1865 gen. rev., is revised. A new taxonomic arrangement is proposed for these genera reflecting morphological evidence. Siculodes comprises six valid taxa: S. aurorula Guenée, 1858 (type species), S. avicula Guenée, 1877, S. eurymenana (Walker, 1865), S. satellifera (Gaede, 1936), S. straminula Pagenstecher, 1892, and S. subchalybaea (Walker, 1865) stat. rev.; while Aziba Walker, 1865 gen. rev., since a long time considered a junior synonym of Siculodes is here revalidated and comprises six valid taxa: A. falcata (C. Felder & Rogenhofer, 1875) comb. rev., A. mediula (Guenée, 1877) comb. nov., A. roseobrunneata (Heppner & Thiele, 2017) comb. nov., A. substrigata Warren, 1900 comb. rev., A. transversa Walker, 1865 comb. rev. (type species), and A. vehemensaria (H. Edwards, 1884) stat. rev. et comb. nov. Siculodes serpula Guenée, 1877 syn. reinst. and Risama falcata matusi Köhler, 1940 syn. nov. are considered junior synonymies of A. falcata comb. rev. Lectotypes are designated to Siculodes aurorula Guenée, 1858, Siculodes straminula Pagenstecher, 1892, Aziba falcata (C. Felder & Rogenhofer, 1875), and Risama falcata matusi Köhler, 1940. In addition, all species are redescribed and figured, habitats of some species are reported, and geographical distribution maps are provided for all species.

Metagenome-assembled genomes provide insight into the microbial taxonomy and ecology of the Buhera soda pans, Zimbabwe

The use of metagenomics has substantially improved our understanding of the taxonomy, phylogeny and ecology of extreme environment microbiomes. Advances in bioinformatics now permit the reconstruction of almost intact microbial genomes, called metagenome-assembled genomes (MAGs), from metagenomic sequence data, allowing for more precise cell-level taxonomic, phylogenetic and functional profiling of uncultured extremophiles. Here, we report on the recovery and characterisation of metagenome-assembled genomes from the Buhera soda pans located in eastern Zimbabwe. This ecosystem has not been studied despite its unique geochemistry and potential as a habitat for unique microorganisms. Metagenomic DNA from the soda pan was sequenced using the DNA Nanoball Sequencing (DNBSEQR) technique. Sequence analysis, done on the Knowledgebase (KBase) platform, involved quality assessment, read assembly, contig binning, and MAG extraction. The MAGs were subjected to taxonomic placement, phylogenetic profiling and functional annotation in order to establish their possible ecological roles in the soda pan ecosystem. A total of 16 bacterial MAGs of medium to high quality were recovered, all distributed among five phyla dominated by Pseudomonadota and Bacillota. Of the ten MAGs that were taxonomically classified up to genus level, five of them belonged to the halophilic/ haloalkaliphilic genera Alkalibacterium, Vibrio, Thioalkalivibrio, Cecembia and Nitrincola, underscoring the importance of haloalkaliphiles in the Buhera soda pans. Functional profiling revealed the possession of diverse carbohydrate-metabolising pathways by the MAGs, with glycolysis and the pentose phosphate pathways appearing to be key pathways in this ecosystem. Several MAGs possessed pathways that implicated them in some key aspects of the nitrogen and sulphur cycle. Some MAGs harboured both sulphate reduction and respiratory pathways, suggesting a possible mechanism of ATP biosynthesis through sulphate respiration. This study demonstrates the feasibility of the recovery and taxonomic and functional annotation of high quality microbial genomes from extreme environments, making it possible to establish the ecological roles and biotechnological potential of uncultured microorganisms.

Revised Hyrcanus group phylogeny based on ITS2 resolution

This study presents a meticulous reassessment of the phylogenetic relationships within the Hyrcanus Group of Anopheles (Anopheles) mosquitoes, a group of substantial medical and epidemiological importance. These vectors are responsible for the transmission of various diseases, including malaria, posing a significant public health challenge in many regions. This research employs advanced molecular techniques, specifically focusing on the Internal Transcribed Spacer 2 (ITS2) region, to enhance taxonomic resolution within this complex group of mosquitoes. The ITS2 region has proven to be a valuable molecular marker for differentiating closely related species and refining our understanding of their evolutionary history. A total of 857 ITS2 sequences of Hyrcanus group members were retrieved from the GenBank after using specific search keywords. 83 out of the initial retrieved sequenced were then finally selected and utilized in the analysis based on sequence quality and length. Sequences retrieved represent 22 out of the 25 members of the Hyrcanus group. This study clarified the confusion surrounding the taxonomic placement and synonymy of each member of the Hyrcanus group using the latest available molecular ITS2 sequence data through Neighbor Joining (NJ), Maximum Likelihood (ML), and Bayesian Inference (BI) phylogenetic tree analysis. The work also revised the taxonomic groupings based on morphological characters observed within the group and evaluated the limitations within the classification based on morphology and the challenges using molecular ITS2 data. A refined understanding of the Hyrcanus group phylogeny provides a foundation for more precise and tailored approaches to combat malaria and other vector-borne diseases in South Korea.

A phylogenomic tree of wood-warblers (Aves: Parulidae): Dealing with good, bad, and ugly samples

The New World warblers (Parulidae) are a model group for ecological and evolutionary analyses. However, current phylogenetic relationships across this family are based upon few loci. Here we use ultraconserved elements (UCEs) to estimate a rigorous species-level phylogeny for the family. As is true for many groups, high-quality tissues were unavailable for some taxa. Thus, we explored methods for incorporating sequences derived from historical (toe pad) samples to expand the phylogenetic datasets. We recovered an average of 4,186 UCE loci and mitochondrial bycatch data (supplemented with published mitochondrial data) from 96% of all currently recognized species. We found that the UCE phylogeny built with alignments with less than 70% of gaps and ambiguities recovered the most robust phylogenetic relationships for this family, representing 101 species. Using this phylogeny as a topological backbone and adding ten fair quality “bad” samples effectively generated an overall well supported phylogeny, representing 108 species (∼90% of all species). Based on this tree, we then added in seven poor quality “ugly” samples and six of those were placed within their expected genera. We also explored the phylogenetic positions of the likely extinct Leucopeza semperi and the endangered Catharopeza bishopi where limited data was obtained. Overall, taxonomic placements in our UCE trees largely correspond to previously published studies with the recovery of all currently recognized genera as monophyletic except for Basileuterus which was rendered paraphyletic by B. lachrymosus. Our study provides insights in understanding the phylogenetic relationships of a model Passeriformes family and outlines effective practices for managing sparse genomic data sourced from historical museum specimens. Variable topological arrangements across datasets and analyses reflect the evolutionary complexity of this group and provide future topics for in-depth studies.

Detection and discovery of plant viruses in Disporopsis through high-throughput sequencing.

Disporopsis, a member of the Liliaceae family and a perennial herb, is predominantly cultivated in southwestern and southeastern China. Its rhizome, referred to as Zhugenqi, serves as a traditional Chinese medicinal herb for the treatment of bone injuries. However, viral diseases have emerged as a significant challenge in the cultivation of Disporopsis. The aim of this study was to identify and characterize viruses present in diseased samples of Disporopsis spp. using high-throughput sequencing (HTS) and reverse transcription-polymerase chain reaction (RT-PCR) to enhance the understanding of the virome associated with Disporopsis and to inform diagnostic and control strategies for viral diseases in this plant. Diseased samples of Disporopsis spp. were subjected to HTS and RT-PCR for virus identification. A total of five viruses were detected, including three novel viruses and two known viruses. The novel viruses were provisionally named Disporopsis chlorotic stripe virus (DCSV), Disporopsis pernyi-associated partitivirus (DaPTV), and Disporopsis pernyi-associated lispi-like virus (DaLV). Sequence identity and phylogenetic analyses were performed to confirm the novelty and taxonomic placement of these viruses. DCSV exhibited polyprotein sequence identities ranging from 47.6% to 83.6% with other potyviruses, with the highest identity (83.6%) shared with Polygonatum kingianum virus 5 (PKgV5). DaLV shared an amino acid sequence identity of 34.59% with maize suscal virus (MSV), and DaPTV shared an identity of 76.18-85.10% with Paris alphapartitivirus (ParAPV). Phylogenetic analyses supported the potential classification of the three novel viruses as new members of their respective genera. Two isolates of polygonatum mosaic-associated virus 1 (PMaV1) were identified in Disporopsis for the first time, showing divergences of 96.33% and 98.86% from existing isolates. RT-PCR analysis of 67 Disporopsis field samples collected from four cities in China revealed that more than half of the samples tested positive for at least one of the five viruses. PMaV1 and DaLV were the most prevalent, detected in 22 and 34 out of the 67 samples, respectively. Other viruses were detected at low rates and/or had limited distribution. This study provides insights into the virome infecting Disporopsis and offers valuable information for the diagnosis and control of viral diseases in this plant. The identification of five viruses, including three potential new members of their respective genera, contributes to the understanding of the viral threats to Disporopsis cultivation.

Amphisphaeria hongheensis sp. nov. (Amphisphaeriaceae, Amphisphaeriales) from Yunnan Province, China

Yunnan Province encompasses the highest fungal diversity in China, and novel fungal species are regularly introduced. Several saprobic fungi were collected during surveys of fungi associated with woody plants in Yunnan Province, Southwestern China. The fungi samples were initially identified as Amphisphaeria. Multi-gene phylogenetic analysis based on combined datasets of LSU, ITS, rpb2, and tub2 regions and morphological characteristics confirmed that the samples represent a previously unidentified fungus belonging to Amphisphaeria, which is named A. hongheensis sp. nov. This paper provides a full description, illustrations, and a phylogenetic tree showing the new species' taxonomic placement.

Heyndrickxia coagulans LMG S-24828 Is a Safe Probiotic Strain Capable of Germinating in the Human Gut.

Ensuring the viability and efficacy of probiotic microorganisms during manufacturing and gastrointestinal transit remains challenging, particularly for sensitive strains such as certain lactic acid bacteria and bifidobacteria. This has led to increased interest in spore-forming bacteria, such as Heyndrickxia coagulans (formerly Bacillus coagulans), which can endure environmental stresses through their endospore forms. This study presents a comprehensive analysis of the probiotic potential of strain LMG S-24828, originally isolated from healthy human feces. The genomic analysis confirmed the strain's taxonomic placement within the species H. coagulans and revealed no extrachromosomal plasmid DNA, suggesting genetic stability. Safety assessments demonstrated that LMG S-24828 does not produce D-lactate, deconjugate bile salts, or exhibit hemolytic activity, and it lacks transmissible antibiotic resistances. Phenotypic tests showed the strain's metabolic versatility, including its ability to hydrolyze complex carbohydrates and adhere to intestinal epithelial cells. Moreover, LMG S-24828 exhibited robust survival and germination during in vitro and in vivo gastrointestinal simulations, with evidence of significant spore germination in the human gut. These findings suggest that H. coagulans LMG S-24828 possesses several advantageous traits for probiotic applications, warranting further clinical evaluation to confirm its health benefits.

African cichlid fishes: morphological data and taxonomic insights from a genus-level survey of supraneurals, pterygiophores, and vertebral counts (Ovalentaria, Blenniiformes, Cichlidae, Pseudocrenilabrinae).

The iconic freshwater cichlid fishes (Cichlidae) comprise about 1750 validly named species and hundreds more that are known, but not yet described and named. Cichlids are an important source of protein for millions of people on several continents, are model organisms in studies of evolution, speciation, ecology, development, behaviour and physiology and are popular as aquarium fishes. Yet, comparative studies of cichlid internal anatomy are rare. Even their osteology has not been taxonomically surveyed. The cichlid postcranial skeleton has been especially neglected. Here, I provide the first survey in cichlids of the considerable variation in numbers of vertebrae, supraneurals and dorsal- and anal-fin supports (pterygiophores), as well as the patterns with which the pterygiophores insert between the neural or haemal spines. The study includes some 1700 specimens of nearly 400 cichlid species. Focusing on the largest subfamily, the African cichlids or Pseudocrenilabrinae, the survey furnishes data from species in all but one of its 166 genera. Limited data from species in the other cichlid subfamilies (Etroplinae, Ptychochrominae and Cichlinae) and from the related leaffishes, Polycentridae, are also presented. Key examples of pterygiophore insertion patterns from throughout the range of variation are illustrated and discussed. Detailed analytical tables and all raw data are provided in supplementary files.A bizarre specialisation in Cyprichromis is noted, evidently for the first time. Uniquely in this Lake Tanganyikan genus, five to seven anal pterygiophores are abdominal in position, located anterior to the anal fin and inserting toward or between successive pairs of pleural ribs.Taxonomic changes: The most speciose tribe of African cichlids, currently known as Haplochromini, is correctly called Pseudocrenilabrini. Based chiefly on the molecular phylogenetic findings of other workers, I propose four pseudocrenilabrine subtribes, one occurring in rivers and three endemic to Lake Malawi. I also re-assign the Lake Tanganyikan tribe Tropheini as another subtribe of Pseudocrenilabrini, in line with numerous molecular studies placing tropheines firmly within this tribe. The remaining genera of Pseudocrenilabrini remain incertae sedis in this tribe pending clarification of their phylogenetic relationships.The character complex here surveyed is a promising source of taxonomically and phylogenetically informative characteristics distinguishing or uniting cichlid taxa at multiple hierarchical levels, from species through subfamily. This reference set of novel character data can also provide information for palaeontological studies of African cichlids. These attributes are skeletal features potentially available for study in well preserved fossils and may help determine their correct taxonomic placement.

Morphological and phylogenetic analyses reveal eight novel species of Pestalotiopsis (Sporocadaceae, Amphisphaeriales) from southern China.

Plants play an important role in maintaining the ecological balance of the biosphere, but often suffer from pathogenic fungi during growth. During our continuing mycological surveys of plant pathogens from terrestrial plants in Jiangxi and Yunnan provinces, China, 24 strains of Pestalotiopsis isolated from diseased and healthy tissues of plant leaves represented eight new species, viz. P.alpinicola, P.camelliicola, P.cyclosora, P.eriobotryae, P.gardeniae, P.hederae, P.machiliana and P.mangifericola. Multi-locus (ITS, tef1-α and tub2) phylogenetic analyses were performed using maximum-likelihood and Bayesian inference to reveal their taxonomic placement within Pestalotiopsis. Both molecular phylogenetic analyses and morphological comparisons supported them as eight independent taxa within Pestalotiopsis. Illustrations and descriptions of these eight taxa were provided, in conjunction with comparisons with closely related taxa in the genus. This work highlights the large potential for new fungal species associated with diseased plant leaves.

Chlorocilliumsinense sp. nov. (Clavicipitaceae) and Calcarisporiumguizhouense sp. nov. (Calcarisporiaceae) in Hypocreales from China.

Two new species, Chlorocilliumsinense and Calcarisporiumguizhouense, isolated from a spider and fruiting body of Cordyceps sp., are introduced. Morphological comparisons and phylogenetic analyses based on multigene datasets (ITS+LSU+RPB2+tef-1alpha) support the establishment of the new species. A combined dataset of ITS, LSU, RPB2, and tef-1alpha showed the taxonomic placement of Chlorocillium in Clavicipitaceae for the first time. Pseudometarhizium is regarded as a synonym of Chlorocillium and two Pseudometarhizium species are transferred into the latter based on the phylogenetic analysis and morphological characteristics.

An early cladoxylopsid with complex vascular architecture: Paracladoxylon kespekianum gen. et sp. nov. from the Lower Devonian (Emsian) of Quebec, Canada.

Cladoxylopsids, one of the first lineages with complex organization to rise from the plexus of structurally simple plants that comprised the earliest euphyllophyte floras, are moniliformopsid euphyllophytes. They formed Earth's earliest forests by the Middle Devonian and are thought to have given rise to the equisetopsids and probably some fern lineages. The Lower Devonian (Emsian) Battery Point Formation (Quebec, Canada) contains previously unrecognized cladoxylopsids preserved anatomically. One of these provides new data on structural evolution among euphyllophytes and is described here. The anatomy and morphology of permineralized axes of the new plant were studied with light and electron microscopy on sections produced using the cellulose acetate peel technique. Morphological comparisons and phylogenetic analysis were used for taxonomic placement of the plant. The plant represents a new species, Paracladoxylon kespekianum Chu et Tomescu, gen. et sp. nov., that has tracheids with modern-looking bordered pits and the complex cauline vascular architecture characteristic of the genus Cladoxylon. Its dissected ultimate appendages have complex regular taxis and a pattern of vascularization that suggests bilateral symmetry. Paracladoxylon kespekianum is one of the largest Early Devonian euphyllophytes, among the oldest representatives of the cladoxylopsid group, and older than any species of the closely related Cladoxylon by at least 35 million years. It is also one of the oldest anatomically preserved representatives of the cladoxylopsid group. Its anatomical organization pushes the rise of complex vascular architecture among moniliformopsid euphyllophytes deeper in time than previously recognized.

Bifidobacterium fermentum sp. nov. and Bifidobacterium aquikefiricola sp. nov., isolated from water kefir.

Four strains, representing two novel Bifidobacterium species, were isolated from water kefir, a fermented beverage. 16S rRNA gene analysis suggested that the novel species share high identities (98.82-98.89%) with Bifidobacterium aquikefiri LMG 28769T. Complete genomes were assembled with a short- and long-read hybrid sequencing approach. In agreement with the 16S rRNA gene analysis, phylogenetics with 117 marker genes places the novel species closest to B. aquikefiri LMG 28769T as well. The isolates have average nucleotide identity (ANI) scores ranging from 81.46 to 84.84% and digital DNA-DNA hybridization (dDDH) scores from 23.9 to 38.5% with the closest related species, as well as ANI scores between the proposed new species of 80.50%, indicating that the isolates represent two novel species. Matrix-assisted laser desorption/ionization-time of flight chemotaxonomic analysis supported the gene-based taxonomic placement. We propose the names Bifidobacterium fermentum sp. nov. and Bifidobacterium aquikefiricola sp. nov. for these novel species within the Bifidobacterium genus. The proposed type strain B. fermentum WK012_4_13T (= LMG 33104T = DSM 116073T; GenBank accession number GCF_041080835.1) has a genome size of 2.43 Mbp, with a G+C content of 56.00 mol%. The proposed type strain for B. aquikefiricola WK041_4_12T (= LMG 33105T = DSM 116074T; GenBank accession number GCF_041080795.1) has a genome size of 2.36 Mbp and a G+C content of 53.94 mol%. B. fermentum cells are Gram-positive staining, non-motile, non-spore-forming, fructose-6-phosphate phosphoketolase (F6PPK)-positive, catalase- and oxidase-negative and bacillary club shaped. B. aquikefiricola cells are Gram-positive staining, non-motile, non-spore-forming, F6PPK-positive, catalase- and oxidase-negative and square rod shaped.

The Complete Mitochondrial Genomes of Five Nivanini Species (Hemiptera: Cicadellidae: Evacanthinae) With Phylogenetic Analysis.

To delve deeper into the phylogenetic relationships within Cicadellidae and the taxonomic arrangement of Evacanthinae, our study focuses on the mitochondrial genome sequencing of five Nivanini species: Extensus latus, Concavepiana hamulusa, Sophonia nigrilineata, Sophonia microstaina, and Sophonia fuscomarginata. The results showed that the length of the five mitochondrial genomes ranged from 15,610 to 16,032 bp and included 37 typical genes. The A + T content of Nivanini ranged from 72.5% to 78.7%, which is consistent with that of other sequenced Evacanthinae species. All transfer RNAs (tRNAs) exhibit the typical cloverleaf secondary structure, except for trnS (AGY), which lacks the dihydrouracil (DHU) arm. With regard to protein-coding genes, all started with ATN codons, except for atp8, and most of them use TAA or TAG as termination codons. Using the Bayesian inference and maximum likelihood methods, a phylogenetic tree based on all 37 genes was constructed, with a total of 57 Cicadellidae species and two outgroups included as research objects. The analyses confirmed the monophyletic nature of each subfamily, highlighting Deltocephalinae as the oldest, distinctively parallel to the others.

Unraveling Evolutionary Dynamics: Comparative Analysis of Chloroplast Genome of Cleomella serrulata from Leaf Extracts

Cleomella serrulata is a native flowering plant found in North America. Even though this plant is of ecological and native medicinal importance, very little is known about the genomic makeup of Cleomella and the Cleomaceae family at large. Here, we report the complete chloroplast genome of Cleomella serrulata and provide an evolutionary comparison to other chloroplast genomes from Cleomaceae and closely related families. This study not only confirms the taxonomic placement of Cleomella as a distinct genus, but also provides phylogenetic insights that imply potential adaptive strategies and evolutionary mechanisms driving the genomic diversity of the Cleomella genus. Whole-genome-based and ANI comparisons indicate that the Cleomella species form a distinct clade that is about equidistant from the other Cleomaceae genera as it is from the genera from the nearby Capparaceae and Brassicaceae. This is the first complete chloroplast-based phylogenetic comparison of Cleomella species to other related genera and helps refine the complex taxonomic distinctions of Cleomaceae.

Catalogue of fungi in China 3. New taxa of macrofungi from southern Xizang, China

ABSTRACT This is the third paper in the series Catalogue of fungi in China that aims to systematically and promptly publish Chinese fungal species. In this paper of the series, we focus on macrofungi from the southern border area of Xizang, a previously less concerned region. A total of 15 new species in six orders, 11 families, and 12 genera from Agaricomycetes, Basidiomycota are described. Both morphological and phylogenetic analyses support the identity of these new species and their taxonomic placements. In addition, one new combination Trechispora cryptomerioides is proposed. We hope that the third paper in the series Catalogue of fungi in China will draw more attention to reporting Chinese fungal diversity in the border areas of Xizang and other special geographic regions besides the aim of this series itself.

The Genus Ravenelia: Insights on Taxonomy, Diversity and Distribution.

Ravenelia is the third largest rust genus of the order Pucciniales with more than 200 described species. It is an important rust genus that has undergone tremendous taxonomic changes. This genus produces teliospores united into a head on a compound pedicel composed of two to several hyphae with autoecious, macro-, demi- to hemi-, and, more rarely, microcyclic modes of their life cycle which provide it a unique identity and have proved helpful in the identification of the genus. The current understanding of the taxonomy, history, diversity and distribution of this genus is discussed in this paper. Both online and offline resources were searched to gather data of the published literature. The data thus obtained were analyzed for numerical and graphical summaries to provide the diversity and distribution of the genus. In addition, a phylogenetic analysis based on the ITS and nLSU DNA sequence data available in GenBank and the published literature was performed to examine the taxonomic placement of different species within the genus. The genus was reported to be distributed over 53 countries of the world. Around 51 plant genera belonging to four plant families, viz., Fabaceae, Phyllanthaceae, Asphodelaceae and Zygophyllaceae were found to be infected with these rust fungi. The phylogenetic analysis based on LSU and ITS sequence data revealed the polyphyletic nature of the genus. A table of 248 species of this genus is also provided with all information of host, distribution and cited reference that can be helpful for mycologists to find all information at one place. Future perspectives for the advancement of this genus are also discussed.