Taurus Populations Research Articles

Rapid Divergence of Nesting Depth and Digging Appendages among Tunneling Dung Beetle Populations and Species.

Many dung beetle communities are characterized by species that share very similar morphological, ecological, and behavioral traits and requirements yet appear to be stably maintained. Here, we document that the morphologically nearly indistinguishable, sympatric, and syntopic tunneling sister species Onthophagus taurus and Onthophagus illyricus may be avoiding competitive exclusion by nesting at remarkably different soil depths. Intriguingly, we also find rapid divergence in preferred nesting depth across native and recently established O. taurus populations. Furthermore, geometric morphometric analyses reveal that both inter- and intraspecific divergences in nesting depth are paralleled by similar changes in the shape of the primary digging appendages, the fore tibiae. Collectively, our results identify preferred nesting depth and tibial shape as surprisingly evolutionarily labile and with the potential to ease interspecific competition and/or to facilitate adaptation to local climatic conditions.

Classifying the embedded young stellar population in Perseus and Taurus and the LOMASS database

Context. The classification of young stellar objects (YSOs) is typically done using the infrared spectral slope or bolometric temperature, but either can result in contamination of samples. More accurate methods to determine the evolutionary stage of YSOs will improve the reliability of statistics for the embedded YSO population and provide more robust stage lifetimes. Aims. We aim to separate the truly embedded YSOs from more evolved sources. Methods. Maps of HCO+ J=4-3 and C18O J=3-2 were observed with HARP on the James Clerk Maxwell Telescope (JCMT) for a sample of 56 candidate YSOs in Perseus and Taurus in order to characterize emission from high (column) density gas. These are supplemented with archival dust continuum maps observed with SCUBA on the JCMT and Herschel PACS to compare the morphology of the gas and dust in the protostellar envelopes. The spatial concentration of HCO+ J=4-3 and 850 micron dust emission are used to classify the embedded nature of YSOs. Results. Approximately 30% of Class 0+I sources in Perseus and Taurus are not Stage I, but are likely to be more evolved Stage II pre-main sequence (PMS) stars with disks. An additional 16% are confused sources with an uncertain evolutionary stage. Conclusions. Separating classifications by cloud reveals that a high percentage of the Class 0+I sources in the Perseus star forming region are truly embedded Stage I sources (71%), while the Taurus cloud hosts a majority of evolved PMS stars with disks (68%). The concentration factor method is useful to correct misidentified embedded YSOs, yielding higher accuracy for YSO population statistics and Stage timescales. Current estimates (0.54 Myr) may overpredict the Stage I lifetime on the order of 30%, resulting in timescales of 0.38 Myr for the embedded phase.

Genetic structure and relationships of 16 Asian and European cattle populations using DigiTag2 assay.

In this study, we genotyped 117 autosomal single nucleotide polymorphisms using a DigiTag2 assay to assess the genetic diversity, structure and relationships of 16 Eurasian cattle populations, including nine cattle breeds and seven native cattle. Phylogenetic and principal component analyses showed that Bos taurus and Bos indicus populations were clearly distinguished, whereas Japanese Shorthorn and Japanese Polled clustered with European populations. Furthermore, STRUCTURE analysis demonstrated the distinct separation between Bos taurus and Bos indicus (K=2), and between European and Asian populations (K=3). In addition, Japanese Holstein exhibited an admixture pattern with Asian and European cattle (K=3‐5). Mongolian (K=13‐16) and Japanese Black (K=14‐16) populations exhibited admixture patterns with different ancestries. Bos indicus populations exhibited a uniform genetic structure at K=2‐11, thereby suggesting that there are close genetic relationships among Bos indicus populations. However, the Bhutan and Bangladesh populations formed a cluster distinct from the other Bos indicus populations at K=12‐16. In conclusion, our study could sufficiently explain the genetic construction of Asian cattle populations, including: (i) the close genetic relationships among Bos indicus populations; (ii) the genetic influences of European breeds on Japanese breeds; (iii) the genetic admixture in Japanese Holstein, Mongolian and Japanese Black cattle; and (iv) the genetic subpopulations in Southeast Asia.

Effect of geographic range discontinuity on species differentiation—East-Mediterranean Abies cilicica: a case study

In the present study, a genetic analysis of nuclear microsatellites was conducted in Abies cilicica populations growing in West Taurus, East Taurus, and Lebanon mountains to obtain evidence for significant genetic differentiation. Despite range fragmentation, all examined populations tended to maintain a relatively high level of genetic diversity (H E = 0.724) and showed moderate genetic differentiation (F ST = 0.134) that is frequently noted in Mediterranean tree species. However, significant inbreeding, bottleneck effect, and low effective population sizes were detected, that may negatively affect species genetic resources. Bayesian clustering revealed three distinct groups, “West Taurus”, “East Taurus,” and “Lebanon”, which reflect geographic structure of the species natural range. Minor genetic admixture between Lebanese and East Taurus populations of A. cilicica was found, but no genetic admixture between Lebanese populations and West Taurus. We argue that significant genetic differentiation discovered among areas of species occurrence is probably due to the effect of long-lasting genetic isolation that started in that region along with the Pleistocene climatic alternation and was further enhanced with human-induced deforestations.

A single-dish survey of the HCO+, HCN, and CN emission toward the T Tauri disk population in Taurus

(Abridged) As the stellar X-ray and UV light penetration of a protoplanetary disk depends sensitively on the dust properties, trace molecular species like HCO+, HCN, and CN are expected to show marked differences from photoprocessing effects as the dust content in the disk evolves. We investigate the evolution of the UV irradiation of the molecular gas in a sample of classical T Tauri stars in Taurus that exhibit a wide range in grain growth and dust settling properties. We obtained HCO+ (J=3-2), HCN (J=3-2), and CN (J=2-1) observations of 13 sources with the JCMT. Our sample has 1.3mm fluxes in excess of 75mJy, indicating the presence of significant dust reservoirs; a range of dust settling as traced through their spectral slopes between 6, 13, and 25 microns; and varying degrees of grain growth as extrapolated from the strength of their 10-micron silicate emission features. We compare the emission line strengths with the sources' continuum flux and infrared features, and use detailed modeling based on two different model prescriptions to compare typical disk abundances for HCO+, HCN, and CN with the gas-line observations for our sample. We detected HCO+ (3-2) toward 6 disks, HCN (3-2) from 0 disks, and CN (2-1) toward 4 disks. For the complete sample, there is no correlation between the gas-line strengths or their ratios and either the sources' dust continuum flux or infrared slopes.

Myrmeleotettix Bolivar (Orthoptera, Gomphocerinae) in Anatolia on the basis of morphological and behavioural characters: data suggest a new species from southern end of the Anatolian refugium

Myrmeleotettix Bolivar, 1914 (Orthoptera, Acrididae, Gomphocerinae) is a genus represented by nine species in the whole Palaearctic. It is poorly known in Anatolia except some records of M. maculatus. As for the other glacial refugia, cold preferring members of this genus are discontinuously distributed on high altitudes in Anatolia. Additionally, morphology is not sufficiently useful in taxonomy of gomphocerinae members for those producing a complicate courtship song. Thus an accurate taxonomy requires extensive materials and different character sources. In this study, the taxonomy of Anatolian Myrmeleotettix is reexamined on the basis of qualitative and morphometric morphology, and male calling and courtship songs. Song and morphology both suggest the existence of two species in Anatolia. The first is M. maculatus (Thunberg) which is distributed along the northern one-third of Anatolia in addition to other parts of West Palaearctic. The second is a new species, Myrmeleotettix ethicus sp. n. possibly endemic to the southwest corner of Anatolia. The new species can be easily distinguished from the most similar species M. maculatus by morphology as well as by song characters. The conclusions are: (i) similarities in courtship and calling songs of these two species may indicate that they are sister species (ii) from habitat preference and distribution patterns it can be inferred that they diverged following a cold period and the new species is a remnant of ancestral population in southern Taurus, and (iii) the new species is a range restricted, vulnerable species as is the case for many other taxa present in the Mediterranean Taurus biodiversity hotspot.

Survey of the genusDiplotaenia (Umbelliferae), with description of two new species from Turkey

Pimenov M. G, Kljuykov E. V. & Degtjareva G. V.: Survey of the genus Diplotaenia (Umbelliferae), with description of two new species from Turkey. — Willdenowia 41: 67–74. — Online ISSN 1868-6397; © 2011 BGBM Berlin-Dahlem.. doi:10.3372/wi.41.41107 (available via http//dx.doi.org/)The genus Diplotaenia currently includes two species: D. cachrydifolia, providing the type of the generic name, is disjunctly distributed in N Iran and S and E Turkey; D. damavandica is a narrow endemic of the Elburs Mts, being sympatric in this region with D. cachrydifolia. Studies of the Diplotaenia material from Turkey showed that the Bitlis and Taurus populations are morphologically divergent from each other as well as from the Iranian populations of D. cachrydifolia and they are described as two separate new species, D. turcica and D. hayri-dumanii. Analysis of nrITS sequences of all four species of Diplotaenia and presumably related Umbelliferae taxa of SW Asia provide support for the monophyly of Diplotaenia and its placement in the Prangos-Ferulago clade, but revealed almost no differences among the species of Diplotaenia. The fruit anatomical analysis of Diplotaenia also supports an Apieae rather than a Peucedaneae relationship. A key to the four species of Diplotaenia is provided and the name D. cachrydifolia lectotypified.

The clearing of discs around late-type T Tauri stars: constraints from the infrared two-colour plane

We have undertaken SED modeling of discs around low mass T Tauri stars in order to delineate regions of the infrared two colour plane (K - [8] versus K - [24]) that correspond to discs in different evolutionary stages. This provides a ready tool for classifying the nature of star-disc systems based on infrared photometry. In particular we demonstrate the distinct loci followed by discs that undergo `uniform draining' (reduction in surface density by a spatially uniform factor) from those that clear from the inside out. We draw attention to the absence of objects on this `draining locus' in those star forming regions where the 24um sensitivity would permit their detection, as compared with the ~20 objects in these regions with colours suggestive of inner holes. We thus conclude that discs predominantly clear from the inside out. We also apply our classification of the infrared two colour plane to stars of spectral type M3-M5 in the IC 348 cluster and show that some of its members (dubbed `weak excess' sources by Muzerolle et al 2010) that had previously been assumed to be in a state of clearing are instead likely to be optically thick discs in which the dust is well settled towards the mid-plane. Nevertheless, there are many discs in a state of partial clearing in IC 348, with their abundance (relative to the total population of disc bearing stars) being around four times higher than for comparable stars in Taurus. However, the number of partially cleared discs relative to the total number of late type stars is similarly low in both regions (10 and 20 % respectively). We therefore conclude that IC 348 represents a more evolved version of the Taurus population (with more of its discs being highly settled or partially cleared) but that the timescale for clearing is similarly short (a few times 10^5 years) in both cases.

PRNP Haplotype Associated with Classical BSE Incidence in European Holstein Cattle

BackgroundClassical bovine spongiform encephalopathy (BSE) is an acquired prion disease of cattle. The bovine prion gene (PRNP) contains regions of both high and low linkage disequilibrium (LD) that appear to be conserved across Bos taurus populations. The region of high LD, which spans the promoter and part of intron 2, contains polymorphic loci that have been associated with classical BSE status. However, the complex genetic architecture of PRNP has not been systematically tested for an association with classical BSE.Methodology/Principal FindingsIn this study, haplotype tagging single nucleotide polymorphisms (htSNPs) within PRNP were used to test for association between PRNP haplotypes and BSE disease. A combination of Illumina goldengate assay, sequencing and PCR amplification was used to genotype 18 htSNPs and 2 indels in 95 BSE case and 134 control animals. A haplotype within the region of high LD was found to be associated with BSE unaffected animals (p-value = 0.000114).Conclusion/SignificanceA PRNP haplotype association with classical BSE incidence has been identified. This result suggests that a genetic determinant in or near PRNP may influence classical BSE incidence in cattle.

A microsatellite-based analysis for the detection of selection on BTA1 and BTA20 in northern Eurasian cattle (Bos taurus) populations

BackgroundMicrosatellites surrounding functionally important candidate genes or quantitative trait loci have received attention as proxy measures of polymorphism level at the candidate loci themselves. In cattle, selection for economically important traits is a long-term strategy and it has been reported that microsatellites are linked to these important loci.MethodsWe have investigated the variation of seven microsatellites on BTA1 (Bos taurus autosome 1) and 16 on BTA20, using bovine populations of typical production types and horn status in northern Eurasia. Genetic variability of these loci and linkage disequilibrium among these loci were compared with those of 28 microsatellites on other bovine chromosomes. Four different tests were applied to detect molecular signatures of selection.ResultsNo marked difference in locus variability was found between microsatellites on BTA1, BTA20 and the other chromosomes in terms of different diversity indices. Average D' values of pairwise syntenic markers (0.32 and 0.28 across BTA 1 and BTA20 respectively) were significantly (P < 0.05) higher than for non-syntenic markers (0.15). The Ewens-Watterson test, the Beaumont and Nichol's modified frequentist test and the Bayesian FST-test indicated elevated or decreased genetic differentiation, at SOD1 and AGLA17 markers respectively, deviating significantly (P < 0.05) from neutral expectations. Furthermore, lnRV, lnRH and lnRθ' statistics were used for the pairwise population comparison tests and were significantly less variable in one population relative to the other, providing additional evidence of selection signatures for two of the 51 loci. Moreover, the three Finnish native populations showed evidence of subpopulation divergence at SOD1 and AGLA17. Our data also indicate significant intergenic linkage disequilibrium around the candidate loci and suggest that hitchhiking selection has played a role in shaping the pattern of observed linkage disequilibrium.ConclusionHitchhiking due to tight linkage with alleles at candidate genes, e.g. the POLL gene, is a possible explanation for this pattern. The potential impact of selective breeding by man on cattle populations is discussed in the context of selection effects. Our results also suggest that a practical approach to detect loci under selection is to simultaneously apply multiple neutrality tests based on different assumptions and estimations.

Genetic diversity and structure in Bos taurus and Bos indicus populations analyzed by SNP markers

The purpose of this study was to assess genetic diversity, phylogenetic relationship and population structure among nine Eurasian cattle populations using 58 single nucleotide polymorphism (SNP) markers. The calculated distribution of minor allele frequencies and heterozygosities suggested that the genetic diversity of Bos indicus populations was lower than that of Bos taurus populations. Phylogenetic analyses revealed the main divergence between the Bos taurus and Bos indicus populations, and subsequently between Asian and European populations. By principal components analysis, the Bos taurus and Bos indicus populations were clearly distinguished with PC1 (61.1%); however, six Bos taurus populations clustered loosely and the partial separation between European and Asian groups was observed by PC2 (12.5%). The structure analysis was performed using the STRUCTURE program. Distinct separation between Bos taurus and Bos indicus was shown at K = 2, and that between European and Asian populations at K = 3. At K = 4, 5 and 6, Mongolian population showed an admixture pattern with different ancestry of Asian and European cattle. At K = 7, all Bos taurus populations showed each cluster with little proportion of admixture. In conclusion, 58 SNP markers in this study could sufficiently estimate the genetic diversity, relationship and structure for nine Eurasian cattle populations, especially by analyses of principal components and STRUCTURE.

A novel polymorphism of GDF5 gene and its association with body measurement traits in Bos taurus and Bos indicus breeds

Body measurement traits, influenced by genes and environmental factors, play numerous important roles in the value assessment of productivity and economy. Growth differentiate factor 5 (GDF5), involved in the development and maintenance of bone and cartilage, is an important candidate gene for body measurement traits selection through marker-assisted selection (MAS). In this study, based on the PCR-RFLP technology, we discovered and evaluated the potential association of the single nucleotide polymorphism (SNP) (T586C in exon 1) of the bovine GDF5 gene with body measurement traits in 985 Bos taurus breed, 42 Bos indicus breed and 76 Bos indicus x Bos taurus individuals. As the SNP marker, there were the significant effects on the Body length (BL) in the Bos taurus (BT) and Bos indicus x Bos taurus (BMY) populations (P < 0.05). In BT population, animals with the genotype TT had lower mean values for BL and Hip width (HW) than these with the TC and CC genotype (P < 0.01). In BMY population, animals with the genotype TC had lower mean values for BL than these with the genotype CC (P < 0.05). These results suggest that the SNP of the GDF5 gene could be a very useful genetic marker for body measurement traits in the bovine reproduction and breeding.

Rapid shape divergences between natural and introduced populations of a horned beetle partly mirror divergences between species

Onthophagus taurus is a polyphenic beetle in which males express alternative major (horned) and minor (hornless) morphologies largely dependent on larval nutrition. O. taurus was originally limited to a Turanic-European-Mediterranean distribution, but became introduced to several exotic regions in the late 1960s. Using geometric morphometrics, we investigate the present-day morphological shape differentiation patterns among native (Italian) and introduced (Western Australian and Eastern US) populations. We then contrast these divergences to those observed between native O. taurus and its sympatric sister species O. illyricus. Our analysis failed to find significant divergences between O. taurus populations in external morphological traits (head, pronotum) when analyses were conducted separately for each sex. However, when sexes and male morphs were analyzed together, three important differences among populations emerged. First, relative warp analyses showed that native and introduced populations diverged in certain shape components that normally distinguish major and minor male morphs. Second, comparison of covariation of body regions (head vs. pronotum) in the three populations showed that populations diverged in the nature of this covariation, suggesting that different body regions are not totally constrained to evolve in concert. Lastly, and most importantly, the analysis of genitalic shape revealed little to no divergence of female genitalia, but unexpected substantial differentiation of male genitalia among the three O. taurus populations. This suggests that genitalic shape divergence can occur extremely rapidly even in the absence of sympatry and possible reinforcement, and that the genitalia of males and females may diverge independent of one another, at least during the early stage of interpopulational divergence. Interpopulation divergences in O. taurus mirrored aspects of interspecific divergences between O. taurus and O. illyricus in some cases but not others.

Multi-year validation of photographic identification of grey nurse sharks, Carcharias taurus, and applications for non-invasive conservation research

Captive and wild Carcharias taurus were used to assess whether spots present on their flanks were suitable as natural tags for individual shark recognition. Photographic images of seven captive sharks taken at monthly intervals for 14 months and at 3 years after the start of the study indicated that spot numbers, positions and sizes did not change. Eighty-nine wild sharks were photographically re-captured at least once subsequent to their initial image-capture; fourteen were re-photographed at least 23 months subsequent to their initial image-capture and a single individual after 14 years. Unique physical marks (e.g. partial fin loss) on six wild sharks were used to validate the pattern recognition process by providing unambiguous identification of individuals independently of their spots. Preliminary visual identification data on the eastern Australian C. taurus population show how spatial and temporal information on individual sharks can be collected without recourse to conventional tagging to address key questions about this species’ ecology and population biology.

1–10 Myr–old Low‐Mass Stars and Brown Dwarfs in Nearby Star‐forming Regions

My thesis research has focused primarily on identifying and characterizing pre-main sequence stars in nearby star-forming regions. To this end, I carried out wide-field (~150-250 deg(2)) optical photometric and spectroscopic surveys in and near the star forming regions of Taurus and Upper Scorpius. In Taurus, the aim of my optical photometric/spectroscopic survey was specifically to probe for a population of intermediate-age pre-main sequence stars outside of the young subclusters that are known to contain most of the young Taurus population. From this work I found tens of young (~1-3 Myr) and intermediate-age (~5-10 Myr) stars both near the known Taurus population and to the east, but relatively few pre-main sequence stars of any age to the west. I argued that the new pre-main sequence stars identified far from Taurus can not have originated from the vicinity of the 1-2 Myr-old subclusters and I proposed instead that they comprise a new, previously undiscovered region of recent star formation. In USco, the aim of my optical photometric/spectroscopic survey was to probe beyond previously explored regions to identify large numbers of 5 Myr-old low mass stars. From the spectroscopic data I have discovered 145 low mass members of USco. Using Monte Carlo simulations I showed that, taking into account known observational errors, the observed age dispersion for the low mass population in USco is consistent with all stars forming in a single burst ~5 Myr ago. I also derived the first spectroscopic mass function for USco that extends into the substellar regime and compared results to similar mass functions derived for stars in four other young clusters and associations.

Low genetic diversity in the bottlenecked population of endangered non‐native banteng in northern Australia

Undomesticated (wild) banteng are endangered in their native habitats in Southeast Asia. A potential conservation resource for the species is a large, wild population in Garig Gunak Barlu National Park in northern Australia, descended from 20 individuals that were released from a failed British outpost in 1849. Because of the founding bottleneck, we determined the level of genetic diversity in four subpopulations in the national park using 12 microsatellite loci, and compared this to the genetic diversity of domesticated Asian Bali cattle, wild banteng and other cattle species. We also compared the loss of genetic diversity using plausible genetic data coupled to a stochastic Leslie matrix model constructed from existing demographic data. The 53 Australian banteng sampled had average microsatellite heterozygosity (HE) of 28% compared to 67% for outbred Bos taurus and domesticated Bos javanicus populations. The Australian banteng inbreeding coefficient (F) of 0.58 is high compared to other endangered artiodactyl populations. The 95% confidence bounds for measured heterozygosity overlapped with those predicted from our stochastic Leslie matrix population model. Collectively, these results show that Australian banteng have suffered a loss of genetic diversity and are highly inbred because of the initial population bottleneck and subsequent small population sizes. We conclude that the Australian population is an important hedge against the complete loss of wild banteng, and it can augment threatened populations of banteng in their native range. This study indicates the genetic value of small populations of endangered artiodactyls established ex situ.

Seventeen new very low-mass members in Taurus

the date of receipt and acceptance should be inserted later Abstract. Recent studies of the substellar population in the Taurus cloud have revealed a deficit of brown dwarfs compared to the Trapezium cluster population (Briceno et al. 1998; Luhman 2000; Luhman et al. 2003a; Luhman 2004). However, these works have concentrated on the highest stellar density regions of the Taurus cloud. We have performed a large scale optical survey of this region, covering a total area of ≃ 28deg 2 , and encompassing the densest parts of the cloud as well as their surroundings, down to a mass detection limits of 15 MJ. In this paper, we present the optical spectroscopic follow-up observations of 97 photometrically selected potential new low-mass Taurus members, of which 27 are strong late-M spectral type (SpT ≥ M4V ) candidates. Our spectroscopic survey is 87 % complete down to i ' =20 for spectral types later than M4V, which corresponds to a mass completeness limit of 30 MJ for ages ≤ 10 Myr and Av ≤ 4. We derive spectral types, visual absorption and luminosity class estimates and discuss our criteria to assess Taurus membership. These observations reveal 5 new VLM Taurus members and 12 new BDs. Two of the new VLM sources and four of the new substellar members exhibit accretion/outflow signatures similar to the higher mass classical T Tauri stars. From levels of Hemission we derive a fraction of accreting sources of 42 % in the substellar Taurus population. Combining our observations with previously published results, we derive an updated substellar to stellar ratio in Taurus of Rss = 0.23 ± 0.05. This ratio now appears consistent with the value previously derived in the Trapezium cluster under similar assumptions of 0.26±0.04. We find indication that the relative numbers of BDs with respect to stars is decreased by a factor 2 in the central regions of the aggregates with respect to the more distributed population. Our findings are best explained in the context of the embryo-ejection model where brown dwarfs originate from dynamical interactions in small N unstable multiple systems.

Disks in Transition in the Taurus Population: Spitzer IRS Spectra of GM Aurigae and DM Tauri

We present Spitzer Infrared Spectrograph (IRS) observations of two objects of the Taurus population that show unambiguous signs of clearing in their inner disks. In one of the objects, DM Tau, the outer disk is truncated at 3 AU; this object is akin to another recently reported in Taurus, CoKu Tau/4, in that the inner disk region is free of small dust. Unlike CoKu Tau/4, however, this star is still accreting, so optically thin gas should still remain in the inner disk region. The other object, GM Aur, also accreting, has ~0.02 lunar masses of small dust in the inner disk region within ~5 AU, consistent with previous reports. However, the IRS spectrum clearly shows that the optically thick outer disk has an inner truncation at a much larger radius than previously suggested, ~24 AU. These observations provide strong evidence for the presence of gaps in protoplanetary disks.

Assessment of single nucleotide polymorphisms in genes residing on chromosomes 14 and 29 for association with carcass composition traits in Bos indicus cattle1,2

Objective of this study was to assess the association of SNP in the diacylglycerol O-acyltransferase 1 (DGAT1), thyroglobulin (TG), and micromolar calcium-activated neutral protease (CAPN1) genes with carcass composition and meat quality traits in Bos indicus cattle. A population of Brahman calves (n = 479) was developed in central Florida from 1996 to 2000. Traits analyzed were ADG, hip height, slaughter weight, fat thickness, HCW, marbling score, LM area, estimated KPH fat, yield grade, retail yield, sensory panel tenderness score, carcass hump height, and cooked meat tenderness measured as Warner-Bratzler shear force at 7, 14, and 21 d postmortem. Single nucleotide polymorphisms previously reported in the TG and DGAT1 genes were used as markers on chromosome 14. Two previously reported and two new SNP in the CAPN1 gene were used as markers on chromosome 29. One SNP in CAPN1 was uninformative, and another one was associated with tenderness score (P < 0.05), suggesting the presence of variation affecting meat tenderness. All three informative SNP at the CAPN1 gene were associated with hump height (P < 0.02). The TG marker was associated with fat thickness and LMA (P < 0.05), but not with marbling score. No significant associations of the SNP in the DGAT1 gene were observed for any trait. Allele frequencies of the SNP in TG and CAPN1 were different in this Brahman population than in reported allele frequencies in Bos taurus populations. The results suggest that the use of molecular marker information developed in Bos taurus populations to Bos indicus populations may require development of appropriate additional markers.

Structure of the bovine natural resistance associated macrophage protein (NRAMP 1) gene and identification of a novel polymorphism.

The NRAMP 1 gene is a major candidate gene influencing the outcome of infections with intracellular pathogens in numerous species. NRAMP 1 is highly conserved in many mammalian species and the NRAMP 1 gene shows considerable conservation in structure between mice and humans. The association of NRAMP 1 gene polymorphisms with disease in cattle has been limited to a single microsatellite located within the 3'-non coding region of the bovine NRAMP 1 gene. In order to facilitate further studies on this important gene, we now report the nearly complete structure of the bovine NRAMP 1 gene, including sizes and positions of 13 introns relative to the bovine NRAMP 1 gene coding sequence and the DNA sequence of intron-exon junctions. Comparison of the bovine, murine and human NRAMP 1 gene structures revealed a high degree of conservation in intron placement, though the lengths of several introns were less-well conserved. In general, the greatest divergence in intron lengths occurred in regions of the NRAMP 1 gene displaying the lowest coding sequence conservation. In addition, mutations near intron-exon junctions could account for 25 of the 75 total amino acid differences between murine and bovine NRAMP 1. Using information gained through this study, it was possible to rapidly identify a novel polymorphism within the bovine NRAMP 1 gene intron X. This polymorphism was shown by direct DNA sequence analysis to consist of insertion of three guanine nucleotides at positions 37,40 and 98 relative to the intron X start point. Initial scans of several cattle breeds suggest that the two intron X alleles identified here are stable and widespread in the Bos taurus population.