Anthropogenic activities pose significant challenges to the accumulation of coastal nitrogen (N). Accurate identification of nitrate (NO3−) sources is thus essential for mitigating excessive N in many marginal seas. We investigated the dual isotopes of NO3− in the central Yellow Sea to elucidate the sources and cycling processes of NO3−. The results revealed significant spatial variability in NO3− concentrations among the Yellow Sea Surface Water (YSSW), Changjiang Diluted Water (CDW), Yellow Sea Cold Water Mass (YSCWM), and Taiwan Warm Current Water (TWCW). Stratification played a crucial role in restricting vertical nutrient transport, leading to distinct nutrient sources and concentrations in different water masses. The dual NO3− isotopic signature indicated that atmospheric deposition was the primary source of surface NO3−, contributing approximately 30 % to the NO3− in the YSSW. In the NO3−-rich CDW, the heavier δ15N-NO3− and δ18O-NO3− suggested incomplete NO3− assimilation. Organic matter mineralization and water stratification played crucial roles in the accumulation of nutrients within the YSCWM and TWCW. Notably, regenerated NO3− accounted for approximately half of the NO3− stored in the YSCWM. A synthesis of NO3− dual isotope data across the coastal China seas revealed significant spatial and seasonal variations in the N source. The study emphasized the dynamics of coastal NO3− supply, which are shaped by the complex interconnections among marine, terrestrial, and atmospheric processes. Our approach is a feasible method for exploring the origins of N amidst the escalating pressures of anthropogenic nutrient pollution in coastal waters.