There are several criteria in science for stationarity (stability) of different dynamical systems. The stationarity in physics, engineering and chemistry is being interpreted as matching the requirements of dx/dt=0, where x=x(t) - is the vector of system’s state, or the equality of distribution functions f(x) for different samples which characterize the system. However, in case of social or biological systems the matching of the requirements is impossible and there is a problem of specific assessment of stationary regimes of complex systems of the third type. The possibility of studying of such systems within the frame of deterministic chaos, stochastic approach and theory of chaos and self-organization is being discussed. This article explains why I.R. Prigogine refused from materialistic (in fact deterministic) approach in the description of such special systems of third type and tried to get away from the traditional science in the description of biological systems.