A mathematical model is presented which describes the kinetics of synthesis and cleavage of encephalomyocarditis (EMC) virus-specific proteins as observed in pulse-chase and progressive labeling experiments. Although there is evidence that each ribosome completes translation of the entire protein coding region of the viral RNA, at 4 hr postinfection no polypeptide or nascent chain larger than the 100,000 dalton capsid precursor chain was observed. Hence, little or no “polyprotein” (mass 220,000–260,000 daltons) was produced. Rather, each of the three known primary products (polypeptides A, F, and C) was released upon completion of its synthesis. The precursor of the capsid polypeptides, polypeptide A, was always completed before it was cleaved. This resulted in the initial sequential labeling of the capsid polypeptides following the addition of radioactive amino acids to an infected cell suspension, and provided a means for ordering the capsid polypeptides within A. Chain F was stable, confirming previous reports. Polypeptide C cleaves to form D, which in turn cleaves to form E. However, only 15% of the C chains were released in the intact form. Thirty percent of the time, the nascent C chain had undergone one cleavage thus releasing D as the primary product, and 55% of the time both cleavages had occurred during translation, thus releasing E as a stable primary product. The half-life of the A chain was about 6.7 min, that of the C chain was 10 min, and that of the D chain was 12 min.
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