Sweet Potato Virus Disease Research Articles

In Vitro Identification and In Vivo Confirmation of Inhibitors for Sweet Potato Chlorotic Stunt Virus RNA Silencing Suppressor, a Viral RNase III.

ABSTRACTSweet potato virus disease (SPVD), caused by synergistic infection of Sweet potato chlorotic stunt virus (SPCSV) and Sweet potato feathery mottle virus (SPFMV), is responsible for substantial yield losses all over the world. However, there are currently no approved treatments for this severe disease. The crucial role played by RNase III of SPCSV (CSR3) as an RNA silencing suppressor during the viruses’ synergistic interaction in sweetpotato makes it an ideal drug target for developing antiviral treatment. In this study, high-throughput screening (HTS) of small molecular libraries targeting CSR3 was initiated by a virtual screen using Glide docking, allowing the selection of 6,400 compounds out of 136,353. We subsequently developed and carried out kinetic-based HTS using fluorescence resonance energy transfer technology, which isolated 112 compounds. These compounds were validated with dose-response assays including kinetic-based HTS and binding affinity assays using surface plasmon resonance and microscale thermophoresis. Finally, the interference of the selected compounds with viral accumulation was verified in planta. In summary, we identified five compounds belonging to two structural classes that inhibited CSR3 activity and reduced viral accumulation in plants. These results provide the foundation for developing antiviral agents targeting CSR3 to provide new strategies for controlling sweetpotato virus diseases.IMPORTANCE We report here a high-throughput inhibitor identification method that targets a severe sweetpotato virus disease caused by coinfection with two viruses (SPCSV and SPFMV). The disease is responsible for up to 90% yield losses. Specifically, we targeted the RNase III enzyme encoded by SPCSV, which plays an important role in suppressing the RNA silencing defense system of sweetpotato plants. Based on virtual screening, laboratory assays, and confirmation in planta, we identified five compounds that could be used to develop antiviral drugs to combat the most severe sweetpotato virus disease.

Breeding Progress for Vitamin A, Iron and Zinc Biofortification, Drought Tolerance, and Sweetpotato Virus Disease Resistance in Sweetpotato

Sweetpotato is a resilient food crop with great potential to contribute to reduced hunger in the world. Sweetpotato shows significant potential to contribute to reducing the Global Hunger Index, which reflects deficiencies in calories and micronutrients based on the components of hunger, undernourishment, under-five mortality rate, stunting and wasting. Its genetic diversity has been harnessed through breeding to increase vitamin A, iron, and zinc content, virus resistance and climate resilience for the world's food needs. Africa and India are the most food-insecure regions. The main objectives of this research were to: provide information and a knowledge base on sweetpotato breeding in Africa for biofortification of vitamin A, iron, and zinc, drought tolerance and virus resistance; recommend procedures for generating new breeding populations and varieties; and develop new tools, technologies and methods for sweetpotato improvement. The research was implemented between 2009 and 2020 in 14 collaborating African countries using introduced and local genotypes. The redesigned accelerated breeding scheme resulted in increased genetic gains for vitamin A, iron, zinc contents and virus resistance, and the release by sub-Saharan African countries of 158 varieties; 98 of them orange-fleshed; 55 varieties bred by an accelerated breeding scheme; 27 drought-tolerant and two with enhanced iron and zinc content. Our experience has demonstrated that through the use of more optimized, standardized and collaborative breeding procedures by breeding programs across Africa, it is possible to speed official sweetpotato variety release and contribute to reducing the severe micronutrient deficiencies on the continent.

Transcriptome analysis provides insights into the responses of sweet potato to sweet potato virus disease (SPVD)

Sweet potato (Ipomoea batatas) ranks among the most important crops in the world and provides nutritional and economic sustainability for subsistence farmers in sub-Saharan Africa. Its production is mainly constrained by sweet potato virus disease (SPVD) caused by the coinfection of two positive-sense single-stranded RNA viruses, sweet potato chlorotic stunt virus (SPCSV) and sweet potato feathery mottle virus (SPFMV). Current understanding of sweet potato responses to SPCSV and SPFMV at the molecular level remains very limited. In this study, we performed deep sequencing of both messenger RNA (mRNA) and small RNA (sRNA) populations in an SPVD-susceptible cultivar ‘Beauregard’ upon viral infection, to identify biological pathways that contribute to both general and specific host responses to these important viral pathogens. We found that pathways related to stress response and signaling were significantly affected by viral infection. sRNA components of these pathways were predominantly affected in late stages of the coinfection by SPCSV and SPFMV. We identified several novel microRNAs that were responsive to viral infection, some of which were predicted to target nucleotide-binding site leucine-rich repeat (NBS-LRR) disease resistance genes. The downregulation of the salicylic acid-mediated defense response pathway in particular seems to be a result of the viral infection process, and can in part explain the susceptible nature of the ‘Beauregard’ cultivar.

Genetic variability for Yield and Yield Related Traits in Orange-fleshed Sweetpotato Genotypes Evaluated at Hawassa, Ethiopia

The study was conducted to determine variability for yield and yield related traits in 24 orange fleshed sweetpotato [<i>Ipomoea batatas</i> (L.) Lam] genotypes in the 2017 main cropping season at Hawassa Agricultural Research Center. The experiment was laid out in a Randomized Complete Block Design with three replications. Data were collected on 19 traits and analysis of variance (ANOVA) was conducted. Significant differences (p≤0.05) among genotypes were observed for root yield and its components as well as morphological and qualitative traits including sweetpotato virus disease reaction (SPVD). The phenotypic coefficient of variation (PCV) ranged from 22.1% for mature leaf size to 118.3% for unmarketable root yield, while the genotypic coefficient of variation (GCV) ranged from 20.6% for root girth to 111.7% for unmarketable root yield. All the traits studied showed PCV and GCV more than 20%, suggesting high variability and this could be used for the selection of superior genotypes concerning character of interest. Most traits showed high values for broad-sense heritability, which ranged from 66.7 to 100%, indicating low environmental influence in the observed variation. High heritability coupled with high genetic advances as a percent of mean was observed for marketable root yield, root skin color, root beta carotene content, harvest index, vine length, vine inter-node length and above ground fresh weight, implying these characters are governed by additive gene action and selection would be rewarding for the further improvement of such traits.

Evaluation of Selected Zambian Popular Sweet Potato Genotypes for Response to Sweet Potato Virus Disease

Aim: The objective of this study was to determine the effect of sweet potato virus disease (SPVD) on the beta carotene content, tuber weight and vine weight of selected popular sweet potato genotypes.&#x0D; Study Design: The experiment was laid as a randomized complete block design (RCBD) with three replications.&#x0D; Place and Duration of Study: The experiment was conducted for two cropping seasons (2015/16 and 2016/17) at the Zambia Agriculture Research Institute in Chilanga district of Zambia.&#x0D; Methodology: The uninfected (control) genotypes of Kanga, Chiwoko and Chingovwa were evaluated alongside their SPVD infected genotypes. Genotypic infection was confirmed using molecular approaches, and data was collected at harvest on beta carotene content, tuber weight and vine weight.&#x0D; Results: The results showed that SPVD affects the yield and beta carotene content of sweet potato. Significant differences (P&lt; .001) for yield performance and beta carotene were observed. The yield reduction in percentage across seasons for all genotypes between the uninfected and infected genotypes ranged from 77% to 79% and 67% to 76% for tuber weight and vine weight respectively. Only Chiwoko exhibited higher levels of beta carotene among the genotypes. However, the SPVD infected Chiwoko genotype compared to the uninfected treatment produced mean beta carotene content of 39.1 µg/g and 91.5 µg/g respectively.&#x0D; Conclusion: SPVD reduces the tuber weight, vine weight and beta carotene content in infected sweet potato genotypes.

Assessments of Sweet potato Virus Disease and Influence of Mulching and Organic Insecticide on Sweet Potato Varieties in Kwara State of Nigeria

Assessments of 30 sweet potato farms in three districts of Kwara State of Nigeria were carried out to evaluate the incidence of sweet potato virus disease (SPVD). A serological study by Antigen-coated plate enzyme-linked immunosorbent assay (ACP-ELISA) was set up to assay six viruses on sweet potato samples. A field experiment to appraise the influence of variety, mulch and organic insecticide on virus incidence was performed on two genetically improved sweet potato varieties. The surveys revealed the occurrence of SPVD in all locations with incidence from 2.6% in Oyun (Kwara Central district) to 39.1% in Agbamu (Kwara South district). The serology test confirmed the predominance of Sweet potato feathery mottle virus (SPFMV) and Sweet potato chlorotic stunt virus (SPCSV) correspondingly as 100% and 30% respectively in the study. The field experiment indicated lower virus disease incidence (15.3%) and increased numbers in storage roots (7.5/plant) and weight of storage roots (32.4 kg/plant) in Orange Fleshed Sweet Potato variety, mulched with organic insecticidal treatment. This is the first authentication of the occurrence and prevalence of sweet potato virus disease in Kwara State, Nigeria. The study recommends Orange Fleshed Sweet Potato variety, mulching with guinea corn stalk and organic insecticide application for sustainable management of SPVD, particularly for resource-poor farmers.

Characterization of virus species associated with sweetpotato virus diseases in Burkina Faso.

Sweetpotato (Ipomoea batatas) production in sub‐Saharan Africa is severely affected by viral diseases caused by several interacting viruses, including sweet potato feathery mottle virus (SPFMV), sweet potato chlorotic stunt virus (SPCSV), and sweet potato leaf curl virus (SPLCV). However, the aetiology of viral symptoms on sweetpotato is rarely established in most countries in Africa. Here, we aimed to investigate and characterize the incidence of sweetpotato viruses in Burkina Faso. We performed a countrywide survey in 18 districts of Burkina Faso and collected 600 plants, with and without symptoms, from 80 fields. Viral strains were identified using nitrocellulose membrane‐ELISA, PCR, and reverse transcription‐PCR. Three scions from each of 50 selected plants with symptoms were grafted to healthy Ipomoea setosa and then serological and molecular tests were performed on the 150 recorded samples. Three viruses were detected: 24% of samples were positive for SPFMV, 18% for SPLCV, and 2% for SPCSV. Across all diagnostic tests, 40% of all plant samples were virus‐negative. Coinfections were found in 16% of samples. Partial sequences were obtained, including 13 that matched SPFMV, one that matched SPLCV, and one that matched SPCSV. All identified SPFMV isolates belonged to either phylogroup B or A‐II. The SPCSV‐positive isolates had 98% gene sequence homology with SPCSV‐West Africa for the coat protein. Begomovirus‐positive isolates clustered with SPLCV‐United States. This first study of sweetpotato viral diseases in Burkina Faso indicates widespread occurrence and suggests a need for further epidemiological investigations, breeding programmes focused on virus‐resistant varieties, and improved farming practices to control disease spread.

Development of diagnostic SNP markers for quality assurance and control in sweetpotato [Ipomoea batatas (L.) Lam.] breeding programs.

Quality assurance and control (QA/QC) is an essential element of a breeding program's optimization efforts towards increased genetic gains. Due to auto-hexaploid genome complexity, a low-cost marker platform for routine QA/QC in sweetpotato breeding programs is still unavailable. We used 662 parents of the International Potato Center (CIP)'s global breeding program spanning Peru, Uganda, Mozambique and Ghana, to develop a low-density highly informative single nucleotide polymorphism (SNP) marker set to be deployed for routine QA/QC. Segregation of the selected 30 SNPs (two SNPs per base chromosome) in a recombined breeding population was evaluated using 282 progeny from some of the parents above. The progeny were replicated from in-vitro, screenhouse and field, and the selected SNP-set was confirmed to identify relatively similar mislabeling error rates as a high density SNP-set of 10,159 markers. Six additional trait-specific markers were added to the selected SNP set from previous quantitative trait loci mapping studies. The 36-SNP set will be deployed for QA/QC in breeding pipelines and in fingerprinting of advanced clones or released varieties to monitor genetic gains in famers' fields. The study also enabled evaluation of CIP's global breeding population structure and the effect of some of the most devastating stresses like sweetpotato virus disease on genetic variation management. These results will inform future deployment of genomic selection in sweetpotato.

The Spread and Transmission of Sweet Potato Virus Disease (SPVD) and Its Effect on the Gene Expression Profile in Sweet Potato.

Sweet potato virus disease (SPVD) is the most devastating viral disease in sweet potato (Ipomoea batatas (L.) Lam.), causing substantial yield losses worldwide. We conducted a systemic investigation on the spread, transmission, and pathogenesis of SPVD. Field experiments conducted over two years on ten sweet potato varieties showed that SPVD symptoms first occurred in newly developed top leaves, and spread from adjacent to distant plants in the field. The SPVD incidence was mainly (but not only) determined by the resistance of the varieties planted, and each variety exhibited a characteristic subset of SPVD symptoms. SPVD was not robustly transmitted through friction inoculation, but friction of the main stem might contribute to a higher SPVD incidence rate compared to friction of the leaf and branch tissues. Furthermore, our results suggested that SPVD might be latent in the storage root. Therefore, using virus-free storage roots and cuttings, purposeful monitoring for SPVD according to variety-specific symptoms, and swiftly removing infected plants (especially during the later growth stages) would help control and prevent SPVD during sweet potato production. Comparative transcriptome analysis revealed that numerous genes involved in photosynthesis, starch and sucrose metabolism, flavonoid biosynthesis, and carotenoid biosynthesis were downregulated following SPVD, whereas those involved in monolignol biosynthesis, zeatin biosynthesis, trehalose metabolism, and linoleic acid metabolism were upregulated. Notably, critical genes involved in pathogenesis and plant defense were significantly induced or suppressed following SPVD. These data provide insights into the molecular changes of sweet potato in response to SPVD and elucidate potential SPVD pathogenesis and defense mechanisms in sweet potato. Our study provides important information that can be used to tailor sustainable SPVD control strategies and guide the molecular breeding of SPVD-resistant sweet potato varieties.

Storage Root Yield of Sweetpotato as Influenced by Sweetpotato leaf curl virus and Its Interaction With Sweetpotato feathery mottle virus and Sweetpotato chlorotic stunt virus in Kenya.

In this study, the effect of a Kenyan strain of Sweetpotato leaf curl virus (SPLCV) and its interactions with Sweetpotato feathery mottle virus (SPFMV) and Sweetpotato chlorotic stunt virus (SPCSV) on root yield was determined. Trials were performed during two seasons using varieties Kakamega and Ejumula and contrasting in their resistance to sweetpotato virus disease in a randomized complete block design with 16 treatments replicated three times. The treatments included plants graft inoculated with SPLCV, SPFMV, and SPCSV alone and in possible dual or triple combinations. Yield and yield-related parameters were evaluated at harvest. The results showed marked differences in the effect of SPLCV infection on the two varieties. Ejumula, which is highly susceptible to SPFMV and SPCSV, suffered no significant yield loss from SPLCV infection, whereas Kakamega, which is moderately resistant to SPFMV and SPCSV, suffered an average of 47% yield loss from SPLCV, despite only mild symptoms occurring in both varieties. These results highlight the variability in yield response to SPLCV between sweetpotato cultivars as well as a lack of correlation of SPLCV-related symptoms with yield reduction. In addition, they underline the lack of correlation between resistance to the RNA viruses SPCSV and SPFMV and the DNA virus SPLCV.[Formula: see text] Copyright © 2020 The Author(s). This is an open access article distributed under the CC BY 4.0 International license.

Efficiency of insect-proof net tunnels in reducing virus-related seed degeneration in sweet potato.

Virus-related degeneration constrains production of quality sweet potato seed, especially under open field conditions. Once in the open, virus-indexed seed is prone to virus infection leading to decline in performance. Insect-proof net tunnels have been proven to reduce virus infection under researcher management. However, their effectiveness under farmer-multiplier management is not known. This study investigated the ability of net tunnels to reduce degeneration in sweet potato under farmer-multiplier management. Infection and degeneration were assessed for two cultivars, Kabode and Polista, grown in net tunnels and open fields at two sites with varying virus pressures. There was zero virus incidence at both sites during the first five generations. Sweet potato feathery mottle virus and sweet potato chlorotic stunt virus were present in the last three generations, occurring singly or in combination to form sweet potato virus disease. Virus infection increased successively, with higher incidences recorded at the high virus pressure site. Seed degeneration modelling illustrated that for both varieties, degeneration was reduced by the maintenance of vines under net tunnel conditions. The time series of likely degeneration based on a generic model of yield loss suggested that, under the conditions experienced during the experimental period, infection and losses within the net tunnels would be limited. By comparison, in the open field most of the yield could be lost after a small number of generations without the input of seed with lower disease incidence. Adopting the technology at the farmer-multiplier level can increase availability of clean seed, particularly in high virus pressure areas.

Combining ability and heterosis of selected sweetpotato (Ipomoea batatas L.) clones for storage root yield, yield-related traits and resistance to sweetpotato virus disease

Designed crosses using genetically diverse and complementary genotypes is useful to develop sweetpotato clones with improved agronomic traits. The objective of this study was to determine combining ability and heterosis among selected sweetpotato clones for number of storage roots per plant (NRPP), storage root yield (SRY), dry matter content (DMC) and resistance to sweetpotato virus disease (SPVD) for breeding. Eight selected genotypes were crossed using an 8 × 8 half diallel mating design to generate 28 families which were evaluated along their parents under field condition at three sites using a 6 × 6 lattice design with three replications. General combining ability (GCA) and specific combining ability (SCA) effects were highly significant (P < 0.001) among families. Significant GCA × sites and SCA × sites effects indicated environmental effect on gene action and expression. Parental genotypes Simama and Gairo had positive and significant GCA effects for NRPP. The parents 03-03, Ukerewe and Simama had significant and positive GCA effects for SRY and DMC, respectively. Further, Ex-Msimbu-1 and Gairo displayed negative and significant (P ≤ 0.01) GCA effect for SPVD resistance. The genotypes Gairo, 03-03, Ukerewe, Simama and Ex-Msimbu-1 are promising parents for sweetpotato breeding to improve NRPP, SRY, DMC and resistance to SPVD. Further, the study selected best performing families namely: 03-03 × Simama, 03-03 × Resisto and Simama × Ex-Msimbu-1 which recorded the highest mean storage root yields of 16.1, 16.6 and 17.2 tons/ha combined with high DMC and resistant to SPVD for genetic advancement.

Farmer Reported Pest and Disease Impacts on Root, Tuber, and Banana Crops and Livelihoods in Rwanda and Burundi

Biotic constraints cause major crop losses and, hence, food insecurity in sub-Saharan Africa. This study documented the popularity, production constraints, pests and diseases, farmers’ perceptions on the severity of biotic constraints and the impact of related crop losses on household food security for the key root, tuber and banana (RTB) crops (cassava, potato, sweetpotato and banana). Farmer interviews were conducted in 2014 covering 811 households in Rwanda and Burundi. Farmers were asked to list their RTB crop production constraints, name insect pests and diseases of RTB crops, estimate crop loss due to pests and diseases, and mention if their household experienced any form of food insecurity due to pests and diseases. Cutworms and late blight in potato, banana weevils and banana Xanthomonas wilt in banana, cassava whitefly and cassava mosaic disease in cassava, sweetpotato weevils, and sweetpotato virus disease in sweetpotato were the most predominant pests and diseases reported. Crop losses due to pests and diseases for sweetpotato, banana, potato and cassava were estimated at 26%, 29%, 33%, and 36%, respectively, in Rwanda and 37%, 48%, 38%, and 37% in Burundi. Pests and diseases reduce the profitability of RTB crops, threaten food security, and constitute a disincentive for investment. Sustainable and affordable integrated pest management packages need to be developed.

Genotype-by-environment interaction of newly-developed sweet potato genotypes for storage root yield, yield-related traits and resistance to sweet potato virus disease

Genotype-by-environment interaction analysis is key for selection and cultivar release, and to identify suitable production and test environments. The objective of this study was to determine the magnitude of genotype-by-environment interaction (GEI) for storage root yield, yield-related traits and sweet potato virus disease (SPVD) resistance among candidate sweet potato genotypes in Tanzania. Twenty-three newly bred clones and three check varieties were evaluated across six diverse environments using a randomized complete block design with three replications. The Additive Main Effect and Multiplicative Interaction (AMMI) and genotype and genotype-by-environment (GGE) biplot analyses were used to determine GEI of genotypes. Genotype, environment and GEI effects were highly significant (P ≤ 0.01) for the assessed traits. Further, AMMI analysis of variance revealed highly significant (P ≤ 0.001) differences among genotypes, environments and G × E interaction effects for all the studied traits. Both AMMI and GGE biplot analyses identified the following promising genotypes: G2 (Resisto × Ukerewe), G3 (Ukerewe × Ex-Msimbu-1), G4 (03-03 x SPKBH008), G12 (Ukerewe × SPKBH008) and G18 (Resisto × Simama) with high yields, high dry matter content and SPVD resistance across all test environments. The candidate genotypes are recommended for further stability tests and release in Tanzania or similar environments.

Sequencing and assembly of small RNAs reveal the presence of several begomoviruses, potyviruses, badnaviruses and mastreviruses in the sweet potato leaf virome in Barbados

Sweet potato [Ipomoea batatas (L.) Lam] is increasingly becoming an important food and industrial crop worldwide that is affected by over thirty viruses belonging to different virus families. Little is known about these viruses on the many local and commercial sweet potato cultivars in the Caribbean, including Barbados. Therefore, polymerase chain reaction (PCR) and small RNA sequencing and assembly (sRSA) were used to detect viruses in the sweet potato leaf virome in Barbados. The viruses detected by sRSA were mainly from two virus families in sweet potato: Geminiviridae (genus Begomovirus) and Caulimoviridae (genus Badnavirus). Together, these viruses accounted for more than 75% of the virus contigs found in the sweet potato leaf virome in Barbados. Although sweet potato feathery mottle virus (SPFMV, genus Potyvirus, family Potyviridae) was frequently detected by PCR in infected leaf samples, only 10% of the sequenced contigs matched to these viruses in the leaf virome. The results suggest the absence of the sweet potato virus disease complex (SPVD) in Barbados but reveal possibly new, severe single virus infections or emerging virus associations in the virome largely composed of begomoviruses, badnaviruses, potyviruses and mastreviruses previously unreported in sweet potato in the Caribbean.

Effects of sweet potato feathery mottle virus, sweet potato chlorotic stunt virus and their co-infection on sweet potato yield in Western Burkina Faso

Abstract To determine the effects of sweet potato feathery mottle virus (SPFMV), Sweet potato chlorotic stunt virus (SPCSV) and their co-infection on sweet potato yield, twelve sweet potato varieties were assessed in a hotspot area in Western Burkina Faso. The experiment was carried out in a randomized complete-block design with the twelve varieties in three replications. Data were collected on plant growth parameters, plant virus symptoms and yield parameters. Additional testing for selected sweet potato viruses was done using a nitrocellulose membrane enzyme-linked immunosorbent assay (NCM-ELISA) and RT-PCR. SPFMV and SPCSV were the viruses detected in this study. Varieties Djakani and Ligri were virus-free and had the highest average yields out of twelve sweet potato varieties assessed. Field monitoring indicated that 58% of plants were found to be virus-infected. The results suggest that severe symptoms were associated with sweet potato virus disease (SPVD) and yield reduction. However, the interaction of SPCSV with other viruses, which may result in synergistic negative effects on sweet potato yield and quality, needs further research.

Efficiency of the Polycross and Controlled Hybridization Methods in Sweetpotato Breeding in Uganda.

Sweetpotato is an important crop in many parts of the world especially in developing countries. It is used for both human consumption as well as livestock feed. It is an important source of carbohydrates, vitamin C, fibre, iron, potassium, protein and β-carotene. Its production is, however, constrained by several biotic and abiotic factors, including pests and diseases, low soil fertility, drought, cold and salinity. Breeding is one of the ways to overcome some of these constraints and in sweetpotato the polycross or controlled cross methods can be used. To determine which of the two methods was more efficient, genotypes generated by both methods were evaluated over two seasons at Namulonge and Kachwekano. The type of cross (polycross or controlled) was significantly (P ≤ 0.05) different for storage root yield, response to sweetpotato virus disease, Alternaria blight, and harvest index (HI). The controlled cross families had a significantly higher mean HI of 43.2% than the polycross families with a mean HI of 31.8%. Therefore, controlled crosses could be deployed to systematically increase the HI in sweetpotato breeding populations. Significant (P ≤ 0.05) differences were observed among families for all traits. This stresses that the parents used in a cross are very important in generating genotypes with desired attributes. It was apparent that both the polycross and controlled crosses are good methods for generating new sweetpotato genotypes in a sweetpotato breeding program. Where aggregate performance was considered (selection index) the controlled crosses method produced more (75% of the top 20 desirable genotypes) than the polycross method across the two sites. However, the best three genotypes over the two sites were from the polycross family of Ejumula. Therefore, sweetpotato controlled crosses could be very useful for population improvement using recurrent selection while polycrosses could be suitable for variety development. Both hybridization methods require cautious selection of parents to match the breeding objectives.

Viral metagenomics reveals sweet potato virus diversity in the Eastern and Western Cape provinces of South Africa

Limited studies have been undertaken with regard to virus complexes contributing to the aetiology of sweet potato virus disease (SPVD) in South Africa (SA). In this study, a metagenomic approach was adopted to reveal the genetic diversity of viruses infecting sweet potato. In order to undertake a comprehensive analysis of viral sequences, total RNA was isolated from 17 asymptomatic and symptomatic sweet potato plants that were collected from the Eastern (EC) and Western Cape (WC) provinces of SA. DNase-treated total RNA was depleted of ribosomal RNA (rRNA) and deep-sequenced using the Illumina MiSeq platform. Genomic DNA, isolated from the same plants, underwent rolling circle amplification (RCA) and deep sequencing. Sequence reads were analysed with the CLC Bio Genomics Workbench. Both de novo and reference-guided assemblies were performed resulting in four near full-length RNA virus genomes. BLAST searches using de novo assembled sequences against published virus genomes confirmed the presence of previously detected begomoviruses in the Western Cape (WC) province, namely Sweet potato mosaic virus (SPMaV) and Sweet potato leaf curl Sao Paulo virus (SPLCSPV). The begomoviruses were detected in mixed infections with two major disease-causing RNA viruses, Sweet potato feathery mottle virus (SPFMV) and Sweet potato chlorotic stunt virus (SPCSV). The sequence data further demonstrated mixed infections of RNA and DNA viruses from 11 of the 17 sequenced samples. Metagenomics is a reliable diagnostic tool for virus diversity detection, in particular virus-complexes and synergies affecting disease aetiology.

Combining Ability, Heterosis, and Heritability of Storage Root Dry Matter, Beta-Carotene, and Yield-related Traits in Sweetpotato

Orange-fleshed sweetpotato (OFSP) is an effective, low-priced, and sustainable source of β-carotene (provitamin A). However, most OFSP varieties have low storage root dry matter content (DMC), which influences their acceptance by small-scale farmers and hence needs to be improved. The objective of the study was to determine the combining ability, type of gene action, heterosis and heritability of storage root DMC, β-carotene content, and yield-related traits of selected sweetpotato clones for further evaluation and breeding. Crosses were conducted using a 7 × 7 half-diallel mating design and a total of 28 genotypes (seven parents and 21 crosses) were evaluated at four locations in Ethiopia using a 7 × 4 alpha lattice design with two replications. The performance of the genotypes was significantly different (P &lt; 0.01) across the four locations for storage root DMC, β-carotene content, sweetpotato virus disease (SPVD) reaction, storage root yield, and harvest index (HI). The general combining ability (GCA) and specific combining ability (SCA) mean squares were significant (P &lt; 0.01) for all traits except the SCA effect of storage root DMC. The GCA to SCA variance ratios were 0.96, 0.94, 0.74, 0.96, and 0.97 for storage root DMC, β-carotene content, SPVD, fresh storage root yield, and HI, respectively, indicating that the inheritance of these traits was controlled mainly by additive genes. Progenies of crosses involving Ukerewe × Ejumula, Ukerewe × Pipi, Resisto × Pipi, and Ejumula × Pipi exhibited high levels of positive heterosis for storage root DMC. Similarly, progenies of crosses including Resisto × Pipi and Resisto × Ogansagan had higher positive heterosis for fresh storage root yield, reflecting the breeding value of these parents. Relatively high narrow sense heritability (h2) was obtained for β-carotene content (79.8%) and HI (48.6%). However, the h2 estimates of storage root DMC, SPVD, and fresh storage root yield were relatively low at 19.0%, 14.9%, and 20.4%, respectively. Crosses with high β-carotene content such as Ukerewe × Resisto, Resisto × Ogansagan, Eumula × Pipi, and NASPOT 1 × Temesgen exhibited high storage root DMC. These families also had medium-to-high mean fresh storage root yield. Therefore, progenies derived from these families are good candidates to develop improved OFSP varieties with high storage root DMC.

English

Nineteen sweet potato genotypes were screened for tolerance against sweet potato weevils and viruses at different locations of Eastern Hararge. Disease incidence and weevil population was assessed using standard procedures. Results of this study revealed that sweet potato weevils (SPW) and sweet potato virus diseases (SPVD) were present in studied area varied among sweet potato genotypes. Genotypes; Awassa-83, Bekale-A, Bekale-B, CN-1752-9, Cuba-2, Korojo, TIS-70357-5 and TIS-9465-2 had least load of SPW while, Bekale-A, TIS-8250-7 and TIS-9465-2 genotypes were free of virus diseases. Genotypes showing resistance to sweet potato can be used in varietal improvement program. The present studies concluded that the resistant sweet potato genotypes identified for SPW and SPVD could be utilized in integrated sweet potato production for the locations where the pests are major production bottleneck, like in Eastern Hararge. &nbsp; Key words: Resistant, tolerance, Integrated pest management (IPM), sweet potato viruses, Oromiya, Hararge.