AbstractThe layered structure and seasonal variation of the water exchanges in the Sulawesi Sea areas, as well as the corresponding dynamics, are investigated using HYCOM data. A net inward water mass transport is identified in the upper and intermediate layers in the Sulawesi Sea and it is compensated by the net outward transport in the deep layer. As an important source of this net inward transport, the southward flow through the Sibutu Passage (denoted hereafter as Sibutu Flow) reaches 5.06 Sv in winter, accounting for ∼43% of the net inflow. However, it decreases substantially to 1.79 Sv in summer, accounting for only 12% of the inflow. Further analysis reveals that this Sibutu Flow modulates the seasonal variation of the corresponding outward flow at the Makassar Strait, the major exit of the water mass in the Sulawesi Sea. In winter, the enhancement of the Sibutu Flow associated with the greater intrusion of Kuroshio water into the Luzon Strait produces a stronger eastward pressure gradient force, suppressing the surface intrusion of the Mindanao Current. Conversely, this pressure gradient force weakens and shifts westward in summer, permitting a larger water intrusion from the eastern section. Given that the outward Makassar Flow is the main passage of the Indonesian Throughflow (ITF), our study highlights the essential role of the Sibutu Flow in modulating seasonal variabilities of the ITF via the Makassar Strait and, thus, the transfer of water masses and heat content between the Pacific and Indian Oceans.