Suzuki-Miyaura Cross-coupling Reaction Research Articles

Discovery of a New Class of Lipophilic Pyrimidine-Biphenyl Herbicides Using an Integrated Experimental-Computational Approach

Herbicides are useful tools for managing weeds and promoting food production and sustainable agriculture. In this study, we report on the development of a novel class of lipophilic pyrimidine-biphenyl (PMB) herbicides. Firstly, three PMBs, Ia, IIa, and IIIa, were rationally designed via a scaffold hopping strategy and were determined to inhibit acetohydroxyacid synthase (AHAS). Computational simulation was carried out to investigate the molecular basis for the efficiency of PMBs against AHAS. With a rational binding mode, and the highest in vitro as well as in vivo potency, Ia was identified as a preferable hit. Furthermore, these integrated analyses guided the design of eighteen new PMBs, which were synthesized via a one-step Suzuki–Miyaura cross-coupling reaction. These new PMBs, Iba-ic, were more effective in post-emergence control of grass weeds compared with Ia. Interestingly, six of the PMBs displayed 98–100% inhibition in the control of grass weeds at 750 g ai/ha. Remarkably, Ica exhibited ≥ 80% control against grass weeds at 187.5 g ai/ha. Overall, our comprehensive and systematic investigation revealed that a structurally distinct class of lipophilic PMB herbicides, which pair excellent herbicidal activities with new interactions with AHAS, represent a noteworthy development in the pursuit of sustainable weed control solutions.

Rationalization of a Streptavidin Based Enantioselective Artificial Suzukiase: An Integrative Computational Approach.

An Artificial Metalloenzyme (ArM) built employing the streptavidin-biotin technology has been used for the enantioselective synthesis of binaphthyls by means of asymmetric Suzuki-Miyaura cross-coupling reactions. Despite its success, it remains a challenge to understand how the length of the biotin cofactors or the introduction of mutations to streptavidin leads the preferential synthesis of one atropisomer over the other. In this study, we apply an integrated computational modeling approach, including DFT calculations, protein-ligand dockings and molecular dynamics to rationalize the impact of mutations and length of the biotion cofactor on the enantioselectivities of the biaryl product. The results unravel that the enantiomeric differences found experimentally can be rationalized by the disposition of the first intermediate, coming from the oxidative addition step, and the entrance of the second substrate. The work also showcases the difficulties facing to control the enantioselection when engineering ArM to catalyze enantioselective Suzuki-Miyaura couplings and how the combination of DFT calculations, molecular dockings and MD simulations can be used to rationalize artificial metalloenzymes.

Tuning catalytical properties of Pd/MWCNT nanoparticles via precursor variation in supercritical carbondioxide deposition

A practical, stable and non-conventional supercritical carbon dioxide deposition precursor was used to prepare Pd/MWCNT nanoparticles. The bis(2,2’bipyridyl)palladium(II) chloride precursor has a similar solubility value to commercially used precursors while advantageously it can be reduced at moderate temperatures. Palladium nanoparticles, whose particle size distribution were estimated around 10.5 nm, was deposited on multi-walled carbon nanotube support at 80 ºC and under 20.6 MPa. The catalyst showed higher performance for the selected model Suzuki-Miyaura cross-coupling reaction when compared with a similar catalyst which was prepared under similar supercritical conditions but from a different precursor. In general temperature and pressure is the main parameters to tune material properties for this method. Hence, this study reveals how different precursors in supercritical deposition method may affect the material properties for the target applications.

Design of experiment (DOE) and process optimisation of palladium catalysed biphenyl synthesis

ABSTRACT The effects of time, temperature and catalyst concentration were investigated for an optimised condition of biphenyl synthesis by Suzuki-Miyaura cross-coupling reactions by Neolyst catalysts. The optimisation process was analysed using Box Behnken Face-Centred Experimental Design in Response Surface Methodology (RSM). The design was employed to derive a statistical model for the effect of parameters studied on the yield of biphenyl. The coefficient of determination, r 2 was 0.9883% after model reduction. With an optimum time of 6.63 h, a temperature of 73°C and with minimum catalyst concentration of 0.013 mol% gives the optimum conditions for the maximum yield of biphenyl.

Pd-Catalyzed Miyaura Borylation and Telescopic Borylation/Suzuki-Miyaura Cross-Coupling Processes in Deep-Eutectic Solvents.

We report an efficient procedure to carry out palladium-catalyzed Miyaura borylation reactions of (hetero)aromatic halides and triflates in choline chloride (ChCl)-based deep eutectic solvents (DESs). The procedure employs bis(pinacolato)diboron as a boron source and a catalyst prepared in situ from readily available Pd2(dba)3 and the phosphine ligand XPhos. Reactions proceed well in different ChCl-based DESs, among which the best results were provided by environmentally friendly and biodegradable mixtures with glycerol and glucose. The reaction tolerates both EDG and EWG substituents on the substrates and can be run on different halides (chloride, bromide, iodide) and pseudohalides (triflate). Furthermore, for several substrates, the catalyst loading can be reduced to 1 mol % Pd (0.5% mol Pd2(dba)3) without compromising the reaction yield. Moreover, we show that the Miyaura borylation protocol in DES can be combined with a subsequent Suzuki-Miyaura cross-coupling reaction in a one-pot procedure, allowing access to various biaryl products and demonstrating its synthetic utility by preparing the precursors of two compounds with reported applications in the photovoltaics sector. Finally, two green metrics (E-factor and EcoScale) of the new one-pot procedure in DES were calculated and compared with literature values to assess the potential advantages in terms of waste reduction, safety, and energy consumption.

Synthesis of novel 7-substituted pyrido[3,2-b]pyrazin-3(4H)-one derivatives via Suzuki-Miyaura cross-coupling reaction

In this work, 7-substituted Pyrido[3,2-b]pyrazin-3(4H)-one derivatives are reported starting from 4-methyl-3-nitropyridin-2-amine [1], which underwent further transformations followed by Suzuki–Miyaura coupling reaction under microwave conditions. Primarily, 5-bromo-4-methyl-3-nitropyridin-2-amine (Conejo-Garcia et al., 2010) [2] was prepared according to literature, was converted into many other derivative forms that involve different types of reactions like, reduction, cyclization, chlorination, N-alkylation and yielded as 7-bromo-2,8-dimethyl-4-(2-oxo-2-(pyrrolidin-1-yl)ethyl)pyrido[2,3-b]pyrazin-3(4H)-one (Kamble et al., 2016) [6] which was further subjecting with versatile boronic acids via Suzuki–Miyaura coupling to make comparable novel 7-substituted Pyrido[3,2-b]pyrazin-3(4H)-one derivatives (8a-p). The chemical constructions of all yielded compounds were well elucidated by analytical and spectral analyses (TLC, 1H NMR, 13C NMR, and HRMS).

Total synthesis of (-)-ilicicolin H

A concise total synthesis of (-)-ilicicolin H was efficiently achieved in 9 steps from commercially available (S)-(-)-citronellol. Key steps include a strategic convergent method to synthesize the densely substituted pyridone key intermediate by Suzuki-Miyaura cross-coupling reaction, a facile construction of polyene fragment through a regioselective Wittig olefination and construction of the decalin moiety via IMDA. Herein, we describe our efforts towards the synthesis of (-)-ilicicolin H..

Synthesis of amide functionlized bidentate NHC-Pd complex for application as catalyst in Suzuki‐Miyaura cross-coupling, in distilled water, under mild reaction conditions

An amide functionlized bidentate NHC-Pd complex was successfully prepared by a facile solvothermal methodology from a bridged bis-benzimidazolium chloride and K2PdCl4. The new bidentate NHC-Pd complex has been effectively applied as catalyst in Suzuki-Miyaura cross-coupling reactions of aryl halides with arylboronic acids in distilled water (yields up to 99.0%). The bridged bis-benzimidazolium ligand from the Pd complex, bearing the amide functional groups on the nitrogen atom, showed to distinctly influence the electronic and steric effects on the catalytic process. The potential of application of the new NHC-Pd catalyst in diverse CC bond forming processes, working under environmentally friendly conditions, is further outlined.

Retraction: Synthesis and characterization of a supported Pd complex on volcanic pumice laminates textured by cellulose for facilitating Suzuki-Miyaura cross-coupling reactions.

[This retracts the article DOI: 10.1039/D0RA04521G.].

Exploring the energetics of Suzuki cross-coupling reaction: A computational study of palladium and nickel catalysts

The present study employed density-functional theory (DFT) calculations to investigate the Suzuki-Miyaura Cross-Coupling reaction using single atom catalysis (SAC) via palladium or nickel. The reaction barriers for chloride bond cleavage in phenyl chloride were found to be 34.68 kJ/mol and 24.24 kJ/mol for palladium and nickel catalysts, respectively. During the transmetalation process, the energy barrier for boronic acid release from phenyl trihydroxyboronate using SAC via palladium and SAC via nickel was calculated to be 74.17 kJ/mol and 65.22 kJ/mol, respectively. The results indicated that in the oxidative addition and transmetalation reactions, the SAC via nickel outperforms the SAC via palladium, while the SAC via palladium excels in the reductive elimination reaction. These findings suggest the effectiveness of a SAC via nickel as a substitute for SAC via palladium in the synthesis of biphenyls in the Suzuki-Miyaura cross-coupling reaction.

Novel diarylated tacrine derivatives: Synthesis, characterization, anticancer, antiepileptic, antibacterial, and antifungal activities.

In this study, our goal was to synthesize novel aryl tacrine derivatives and assess their potential as anticancer, antibacterial agents, and enzyme inhibitors. We adopted a two-step approach, initiating with the synthesis of dibromotacrine derivatives 3 and 4 through the Friedlander reaction. These intermediates underwent further transformation into diarylated tacrine derivatives 3a-e and 4a-e using a Suzuki-Miyaura cross-coupling reaction. Thorough characterization of these novel diarylated tacrines was achieved using various spectroscopic techniques. Our findings highlighted the potent anticancer effects of these innovative compounds across a range of cancer cell lines, including lung, gynecologic, bone, colon, and breast cancers, while demonstrating low cytotoxicity against normal cells. Notably, these compounds surpassed the control drug, 5-Fluorouracil, in terms of antiproliferative activity in numerous cancer cell lines. Moreover, our investigation included an analysis of the inhibitory properties of these novel compounds against various microorganisms and cytosolic carbonic anhydrase enzymes. The results suggest their potential for further exploration as cancer-specific, enzyme inhibitory, and antibacterial therapeutic agents. Notably, four compounds, namely, 5,7-bis(4-(methylthio)phenyl)tacrine (3d), 5,7-bis(4-(trifluoromethoxy)phenyl)tacrine (3e), 2,4-bis(4-(trifluoromethoxy)phenyl)-7,8,9,10-tetrahydro-6H-cyclohepta[b]quinolin-11-amine (4e), and 6,8-dibromotacrine (3), emerged as the most promising candidates for preclinical studies.

Efficient heck and Suzuki-Miyaura cross-coupling reactions catalyzed by heterogeneous Pd NPs-decorated porous MOF catalysts under mild conditions

Carbon-carbon coupling reactions are extremely interesting for a variety of applications, including pharmaceuticals and biologically active compounds. In this study, we investigated the utilization of functionalized MIL-101 porous MOF for stabilizing palladium nanoparticles (NPs) and examined their catalytic performance in the cross-coupling reaction of aryl halides with phenylboronic acid and methyl acrylate under mild conditions. To achieve this, MIL-101(Al) was synthesized using a solvothermal method, followed by functionalization with environmentally friendly l-Cysteine (CYS). Subsequently, the MIL-101(Al)-CYS compound was immersed in an ethanolic solution of palladium and stirred overnight. The catalyst exhibited remarkable efficiency (over 90 %) in Suzuki and Heck cross-coupling reactions, demonstrating excellent activity and recyclability. The reactions were conducted in polyethylene glycol 200 (PEG 200), a green reaction medium, at temperatures of 70 °C and 60 °C, with Pd loadings of 0.22 and 0.08 mol%, respectively. MOF-based catalysts, owing to their highly tunable structures and porosity, hold great promise as heterogeneous catalysts in organic reactions.

Donor-donor-acceptor (D-D-A) luminogens containing a central carbazole core: Aggregation-induced emission (AIE), full-color solid-state emission and diverse mechanofluorochromic characteristics

The construction of multi-functionalized luminophores with full-color emission based on the same core skeleton is an appealing yet significantly challenging task. In this work, we rationally designed and facilely constructed a series of donor-donor-acceptor (D-D-A) based luminogens by representative Suzuki-Miyaura cross-coupling reaction. Using electron-donating carbazole with hexyl chain as basic core structure, a series of donor-donor-acceptor (D-D-A) typed luminogens with different donor and acceptor units were designed and synthesized. Some compounds showed AIEE or aggregate fluorescence change behaviors due to TICT and RIM. Among them, these compounds displayed diverse mechanofluorochromic characteristics, including reversible or irreversible, red-shifted or blue-shifted mechanofluorochromisms. This provided new ideas for the development of multifunctional organic light-emitting molecules.

TiO2 supported pallidum-bipyridyl complex as an efficient catalyst for Suzuki–Miyaura reaction in aqueous-ethanol

Owing to their improved catalytic stability and ability to undergo repeated cycles, solid-supported catalysts show great potential for various catalytic reactions. In this study, we synthesized a catalyst comprising a palladium-2,2-bipyridine complex supported on TiO2 nanoparticles (TiO2@BDP-PdCl2) fully characterised and investigated its efficacy in Suzuki–Miyaura cross coupling reactions involving phenyl boronic acid with various aryl halides under mild reaction conditions. The 2,2′- bipyridine (bp) has shown excellent complexation properties for Pd (II) and it could be easily anchored onto functionalized TiO2 support by the bridging carboxylate ions. The composition and structure of the as-prepared catalyst was characterized by powder X-ray diffraction (PXRD), scanning electron microscopy (SEM), Transmission Electron Microscope (TEM), X-ray photoelectron spectroscopy (XPS), and UV–Vis spectroscopy. The catalyst easily demonstrated separability, enhancing its practicality in catalytic processes. Subsequent utilization showed a consistent activity level, suggesting the stabilization of the aggregated catalyst species. This research sheds light on the importance of catalyst stability and maintenance during consecutive reaction cycles.

Aggregation-Induced Enhanced Emission of Tetraphenylethene-phenylalanine Hybrids: Synthesis and Characterization.

Aggregation-induced emitting (AIE) luminophores are sensitive and easy-to-handle types of probes that allow driving a stimulus-responsive off/on optical tool through the manipulation of the aggregation behavior. In this work, tetraphenylethene (TPE)-phenylalanine derivatives, characterized by strong aggregation-induced luminescence, were obtained through Suzuki-Miyaura cross-coupling reactions. The reaction proved to be straightforwardly applicable in the single amino acid synthesis as well as in the late-stage peptide functionalization by means of both the classical solution-phase reaction and solid-phase synthesis. A comprehensive structural and analytical investigation highlighted the features driving the self-assembly process and its relationship to AIE efficiency. In particular, we showed that the simple slight (asymmetric) extension of the TPE π-systems results in more efficient and brighter emissions, with respect to the simple TPE system itself.

Evaluation of hemilabile Pd(II) NNS and NNSe non-symmetric pincers in Suzuki–Miyaura cross-coupling: Unexpected selective nitrile hydration of 4-bromonitrobenzene in mild conditions

In this work, four non-symmetric NNS and NNSe Pd(II) pincer complexes (1–4) supported by tridentate iminophosphorane ligands bearing both the indole heterocycle and a varying chalcogenoether pending arm [XR = SPh (1), SePh (2), SMe (3), SeMe (4)], were tested in the Suzuki–Miyaura cross coupling reaction between phenyl boronic acid and aryl bromides. The modest catalytic activity of complex 3 under conventional heating (110 °C), was boosted under microwave irradiation, leading to excellent yields of coupling under remarkably mild conditions: 5 min of reaction time at 70 °C under aerobic conditions. The complexes supported by NNS ligands proved to be more robust and superior catalysts than those supported by NNSe ligands, which tended to decompose under catalytic conditions. Among the four complexes, pincer 3 also demonstrated the best catalytic performance and was tested in the coupling of a variety of p-substituted bromobenzenes. Notably, the catalytic performance of complex 3 was unaffected by the mercury drop test, and with most substrates in the series, the percentage of conversion reflected the aryl bromides’ Hammett parameter. However, little to no coupling occurred with p-bromobenzonitrile and the reaction with p-nitrobenzene resulted in only limited conversion yields. In fact, when activated using microwave irradiation, complex 3 unexpectedly catalyzed the nitrile hydration of p-bromobenzonitrile, yielding p-bromobenzamide under remarkably mild Suzuki–Miyaura coupling conditions.

Effects of Ring Size and Steric Encumbrance on Boron-to-Palladium Transmetalation from Arylboronic Esters.

The structure of the diol from which an arylboronic ester is derived dramatically influences the rate of transmetalation in the Suzuki-Miyaura cross-coupling reaction. Some esters undergo transmetalation more than 20 times faster than the parent arylboronic acid. Herein, investigations into the influence of arylboronic ester ring size and steric properties on the mechanism of transmetalation in the Suzuki-Miyaura reaction are described. Both factors impact the propensity of an arylboronic ester to bind to a dimeric palladium hydroxide complex. The reaction of hindered arylboronic esters derived from 1,2-diols (1,3,2-dioxaborolanes) with palladium hydroxide dimers to form a complex incorporating a Pd-O-B linkage is thermodynamically favorable, but the barrier to coordination is often higher than the barrier to arene transfer. In contrast, the analogous reaction between arylboronic esters derived from 1,3-diols (1,3,2-dioxaborinanes) and palladium hydroxide dimers is thermodynamically unfavorable, as 1,3,2-dioxaborinanes exhibit decreased electrophilicity compared to esters derived from 1,2- or 1,4-diols. These factors also influence the barrier of the arene transfer step, and in many cases, arylboronic esters that do not easily form Pd-O-B linked complexes undergo transmetalation faster than those that do because of hyperconjugative stabilization of the arene transfer transition state.

Single-Molecule Catalysis in the Palladium Cross-Coupling Reaction Cycle.

Single-molecule (SM) methods are applied to study various types of catalytic processes in chemical and biochemical reactions. In this study, the Suzuki-Miyaura cross-coupling reaction forming a fluorescent product is investigated within the SM approximation. Stochastic analysis of emission intermittency in selected nanoscopic spots allows us to determine the single-molecule turnover frequency (SM-TOF) of the Pd catalyst in a specific probe reaction. We generate and analyze simulated intermittency time traces of a single catalyst surrounded by reactant molecules to assess the reliability of the method applied to real intermittency time trace data from hundreds of nanoscopic fluorescence spots. The results demonstrate that the proposed method can be used to evaluate the average SM-TOF of Pd in a cross-coupling reaction.

Late-Stage Diversification of Pyrazoles as Antileishmanial Agents.

N-Pyrazolylcarboxamides and N-pyrazolylureas represent promising lead compounds for the development of novel antileishmanial drugs. Herein, we report the late-stage diversification of 3-bromopyrazoles 10 A/B and 14 A by Pd-catalyzed Sonogashira and Suzuki-Miyaura cross coupling reactions. The electron-withdrawing properties of the cyano moiety in 4-position of the pyrazole ring limited the acylation of the primary amino moiety in 5-position. A large set of pyrazoles bearing diverse aryl and alkynyl substituents in 3-position was prepared and the antileishmanial and antitrypanosomal activity was recorded. The urea 38 lacking the electron withdrawing cyano moiety in 4-position and containing the large 4-benzylpiperidinoo moiety exhibited a modest antileishmanial (IC50=19 μM) and antitrypanosomal activity (IC50=7.9 μM)). However, its considerable toxicity against the PMM and MRC-5 cells indicates low selectivity, i. e. a small gap between the desired antiparasitic activity and undesired cytotoxicity of <2- to 4-fold.

Sadphos as Adaptive Ligands in Asymmetric Palladium Catalysis.

ConspectusPalladium catalysis, as one of the most important strategies in asymmetric synthesis, has continuously attracted the attention of organic chemists. With the development of chiral ligands, increasingly challenging reactions and substantial progress in asymmetric catalysis are being realized.Since 2014, we have focused on exploiting a series of sulfinamide phosphine ligands called "Sadphos," including Ming-Phos, Xu-Phos, Xiao-Phos, Xiang-Phos, TY-Phos, PC-Phos, GF-Phos, and WJ-Phos. These ligands can be easily prepared in two to four steps using commercial materials. These new types of ligands have shown remarkable performance in transition-metal-catalyzed reactions, especially in Pd-catalyzed transformations. X-ray diffraction analysis, mechanistic studies, and density functional theory calculations have revealed that Sadphos ligands can coordinate with the Pd0 and PdII species in the Pd0/P, Pd0/P,S, or PdII/P,O modes.This Account summarizes our recent efforts toward palladium-catalyzed enantioselective reactions using Sadphos ligands. These ligands were found to be privileged and very crucial to promote the reactions by increasing the reactivity and enantioselectivity. Ming-Phos is an effective ligand in Pd-catalyzed asymmetric coupling and intramolecular Heck reactions, providing highly enantioselective trisubstituted allenes, axially chiral anilides, gem-diarylmethine silanes, and disubstituted dihydroisoquinolinones. Incorporation of an electron-rich cyclohexyl group in the phosphine moiety afforded Xu-Phos, which showed a unique effect in a series of asymmetric transformations, including reductive Heck, dearomative Mizoroki-Heck, tandem Heck/Suzuki coupling, carboiodination, carboamination, and cross-coupling reactions. Using a similar strategy, our group synthesized more electron-rich TY-Phos and Xiang-Phos ligands bearing t-butyl and 1-adamantyl group at P atoms, respectively. Regarding stereoelectronic features, these two characteristic ligands were the best choice to satisfy the requirements of the palladium-catalyzed fluoroarylation of gem-difluoroalkenes, intermolecular α-arylation of aldehydes, carboetherification of alkenyl oximes, and carboheterofunctionalization of 2,3-dihydrofurans. Compared with the aforementioned Sadphos ligands, the attractive features of Xiao-Phos, including high nucleophilicity originating from the CH2PPh2 group and the ortho-substituent effect at the side of the aryl ring, are presumably responsible for its efficiency. The Pd/Xiao-Phos catalyst system shows good performance in a series of cross-coupling reactions of secondary phosphine oxides, affording P-stereogenic products bearing multiple types of molecular skeletons. The modification of the basic Sadphos backbone by introducing a xanthene skeleton motivated us to design and synthesize monophosphines, named PC-Phos and GF-Phos. PC-Phos is effective in various reactions, including arylation of sulfenate anions, denitrogenative cyclization of benzotriazoles, and dearomatization of indoles. The practicability of GF-Phos was validated in the Pd-catalyzed asymmetric three-component coupling of N-tosylhydrazones, aryl halides, and terminal alkynes, as well as in the cross-coupling of N-tosylhydrazones and vinyl iodides with pendent amines. In addition, ferrocene-derived WJ-Phos was employed in the palladium-catalyzed Suzuki-Miyaura cross-coupling reaction, affording axially chiral biaryl monophosphine oxides in excellent enantiomeric excesses.