Susceptible Cultivars Research Articles

Pathogenicity and Metabolomic Characterization of Fusarium graminearum and Fusarium poae Challenge in Barley under Controlled Conditions.

Barley is the third most important cereal crop in terms of production in Canada, and Fusarium head blight (FHB) is one of the main fungal diseases of barley. FHB is caused by a species complex of Fusaria, of which Fusarium graminearum Schwabe is the main causal species of FHB epidemics in Canada. Field surveys show that two or more Fusarium species often co-exist within the same field or grain sample, and F. poae is reported as another important species in barley. This study aimed to determine the pathogenicity of F. graminearum, F. poae, and a co-inoculation of both species causing FHB in barley. Two susceptible barley cultivars were spray-inoculated at 10 to 14 days after heading. Phenotypic disease severity was rated on a scale of 0-9 at 4, 7, 14, 21, and 28 days after inoculation. There was a significant difference in FHB severity between F. graminearum and F. poae, where infection with F. graminearum produced more severe disease ratings. F. poae generated lower disease ratings and was not statistically different from the control. When heads were co-inoculated with both Fusarium species, the resulting FHB severity was unchanged relative to heads inoculated with F. graminearum only. The ratio of F. graminearum to F. poae genomic DNA was also no different than when heads were inoculated with F. graminearum alone, as quantified with ddPCR using markers specific to each species. The metabolomic analysis of sample extracts showed that F. graminearum-associated metabolites dominated the mycotoxin profile of co-inoculated samples, which corroborated our other findings where F. graminearum appeared to outcompete F. poae in barley. No significant effect on visual FHB disease ratings or fungal DNA detection was observed between the cultivars tested. However, there were some metabolome differences between cultivars in response to the challenge by both F. graminearum and F. poae.

Integrated Management of Sclerotinia Stem Rot of Soybean Including Organically-Allowed Fungicides in the Midwest United States

Sclerotinia stem rot (SSR) is an economically important disease of soybean, especially in the Great Lakes region of the United States. Few studies on SSR have considered organic management practices and how integrated management techniques best apply in these systems. Trials in Wisconsin and Indiana aimed to evaluate management techniques available to organic farmers for their efficacy in SSR control while preserving yield. The practices evaluated included genetically resistant cultivars, tillage techniques, and the application of Organic Materials Review Institute (OMRI) listed foliar fungicides. The resistant cultivar had significantly lower SSR than the susceptible cultivar in three site-years (P < 0.01). The resistant cultivar also had significantly greater yield than the susceptible cultivar in two site-years (P < 0.05). Using a roller-crimped rye cover crop resulted in mixed results on SSR and yield. No effect on SSR or yield by OMRI listed foliar fungicides was observed (P > 0.05). Overall, the results emphasize the importance of planting a resistant soybean cultivar to manage SSR in organic farming systems in the Midwestern United States.

Identification of Magnaporthe oryzae candidate secretory effector proteins through standardizing the filtering process of the canonical parameters

AbstractThe virulence of Magnaporthe oryzae largely hinges on its secretory effectors. Therefore, identification and thorough understanding of the effector functionality is crucial for unravelling the pathogenicity of the pathogen. In the present study, we employed a modified computational pipeline with deep machine learning techniques with an integration of Magnaporthe effector reference datasets (MOED) that predicted 434 M. oryzae candidate secretory effector proteins (MoCSEPs) from the genomic data. The reliability of the modified CSEP prediction workflow through utilization of precise parametric filtering is considered valid as it predicted 100 functional effectors (97.08%) out of 103 previously identified effector proteins within the Magnaporthe genus. Insights into secretion patterns and subcellular localization elucidated the role of these proteins in host cell recognition. Furthermore, structural classification of MoCSEPs, based on conserved motifs, combined with an exploration of their biological functions, revealed their significance in host adaptability and localization. Experimental validation done through examining expression of the MoCSEPs revealed varied secretion patterns in the resistant (40 expressed) and susceptible (92 expressed) rice cultivars at different time intervals after pathogen inoculation owing to different degrees of resistance by the host cultivars. The present work thus provides the strategic model of canonical parametric evaluation within the MOED and deepens the understanding on the role of secretory proteins of M. oryzae in establishing successful parasitic infection in rice. The predicted MoCSEPs could be used as biomarkers for disease diagnosis and tracking evolutionary shifts in M. oryzae.

Rpv10.2: A Haplotype Variant of Locus Rpv10 Enables New Combinations for Pyramiding Downy Mildew Resistance Traits in Grapevine.

In viticulture, pathogens like the oomycete Plasmopara viticola, the causal agent of downy mildew, can cause severe yield loss and require extensive application of plant protection chemicals. Breeders are generating pathogen-resistant varieties exploiting American and Asian wild Vitis germplasm as sources of resistance. Several loci mediating resistance to P. viticola have been identified in the past but may be overcome by specifically adapted strains of the pathogen. Aiming to find and characterize novel loci, a cross population with Vitis amurensis ancestry was investigated searching for resistance-correlated quantitative trait loci (QTL). As a prerequisite, a genetic map was generated by analyzing the 244 F1 individuals derived from a cross of the downy mildew susceptible Vitis vinifera cultivar 'Tigvoasa' and the resistant V. amurensis pBC1 breeding line We 90-06-12. This genetic map is based on the information from 627 molecular markers including 56 simple sequence repeats and 571 rhAmpSeq markers. A phenotypic characterization of the progeny showed a clear segregation of the resistance traits in the F1 population after an experimental inoculation of leaf discs with downy mildew. Combining genetic and phenotypic data, an analysis for QTL revealed a major locus on linkage Group 9 that correlates strongly with the resistance to downy mildew. The locus was mapped to a region of about 80 kb on the PN40024 (12x.V2) grapevine reference genome. This genomic region co-localizes with the formerly identified locus Rpv10 from the grapevine cultivar 'Solaris'. As we found different allele sizes of the locus-linked SSR markers than those characterizing the known Rpv10 locus and differences in the sequence of a candidate gene, it was regarded as a haplotype variant and named Rpv10.2.

Determining the optimal ratio of resistant to susceptible bentgrass cultivars to reduce dollar spot severity

AbstractDollar spot, caused by Clarireedia spp., is the most prevalent disease on creeping bentgrass golf fairways. Interseeding newer dollar spot‐resistant cultivars into susceptible bentgrass stands could reduce dollar spot severity and the need for resultant fungicide use. This study was conducted to determine the optimal ratio of resistant to susceptible cultivars in a blend that will result in dollar spot reduction. Greenhouse experiments were conducted on cultivar blend ratios (0%, 10%, 25%, 50%, 75%, 90%, 100%) of dollar spot‐resistant (Pure Select, 007XL, Coho) and susceptible (Penncross) bentgrass challenged with inoculation of two Clarireedia spp. isolates. Disease severity was determined using visual estimates and digital image analysis. Dollar spot severity was significantly influenced by the Clarireedia isolate, with a fungicide‐resistant isolate being more aggressive and producing more disease than a sensitive one. Dollar spot severity was highest on Penncross alone, with no statistical differences observed among the resistant cultivar monostands. Mean disease severity of the blended cultivar ratios was divided into three statistically different groups—low resistance (10% and 25%), medium resistance (50% and 75%), and high resistance (90% and 100%). Compared to Penncross, blending a 10% resistant cultivar reduced AUDPC (area under the disease progress curve) values by 2% and 3% in Experiments 1 and 2, respectively, while blending a 90% resistant cultivar yielded 20% and 32% reductions. These results indicate dollar spot severity decreases as the ratio of the resistant cultivar in a stand increases, and blending resistant cultivars into susceptible has the potential for reducing disease.

Occurrence of Yam Mosaic Virus and Yam Mild Mosaic Virus on Dioscorea spp. Germplasm Collection in Cuba-Epidemiology of Associated Diseases.

Potyvirus diseases are one of the main challenges facing the production of yam (Dioscorea spp.). The objective of this study was to identify the potyviruses present in the Dioscorea spp. germplasm collection at Instituto de Investigaciones de Viandas Tropicales (INIVIT) to establish methodologies for the characterization of the associated diseases. For this purpose, immunochemical and molecular methods were used to identify the potyviruses present. The symptomatology of Dioscorea spp. at INIVIT's germplasm collection was described. In addition, the severity and incidence in the germplasm collection and production areas were evaluated. As a result, the first report of yam mosaic virus (Potyvirus yamtesselati) and yam mild mosaic virus (Potyvirus yamplacidum) in Cuba is presented. The existence of resistant, tolerant, and susceptible cultivars to potyvirus-associated diseases in the germplasm collection was detected, and the incidence of these diseases was higher than 64% in the production areas evaluated. This study represents a step forward in the establishment of certification programs for propagating material of Dioscorea spp. in Cuba.

Characterization, Phylogenetic Analyses, and Pathogenicity of Eutiarosporella dactylidis on Sorghum in China.

Sorghum, the fifth-largest cereal crop globally and a C4 crop, mainly grows in arid and semi-arid areas. In 2021-2023, a new foliar disease of sorghum occurred in China. The diseased leaves showed water-soaked symptoms in the leaf tip and margins, resulting in half- and full-leaf desiccation and necrosis, thus affecting plant photosynthesis. A total of 24 Eutiarosporella strains were isolated from symptomatic leaves. Based on morphological characteristics and multi-locus phylogenetic analysis involving ITS, LSU, and EF1-α sequences, and the pathogenicity test, the pathogen of sorghum causing leaf blight in China was identified as Eutiarosporella dactylidis. The virulence of all E. dactylidis strains was evaluated using the spray-mycelium method. Different strains showed significantly different pathogenicities toward a susceptible cultivar, Longza 10, with disease indexes ranging from 23.76 to 60.37. This study first reported leaf blight of sorghum caused by E. dactylidis and named it "Eutiarosporella leaf blight", which provides a theoretical basis for farmers in disease management.

Screening of Gerbera Cultivars against Root-Knot Nematode Meloidogyne incognita

Aims: To find out the source of resistance against root-knot nematode, Meloidogyne incognita in different gerbera cultivars and their evaluation. Study Design: Completely Randomized Design. Place and Duration of Study: Biswanath College of Agriculture, Biswanath Chariali, Assam during rabi season 2023. Methodology: Suckers of six gerbera cultivars were planted in pots and were inoculated with freshly hatched second stage juveniles of M. incognita (1 J2/cm3 soil) fifteen days after planting. Results: Upon observation 2 months after inoculation results showed that three cultivars viz. Pink Melody, Red Seven and Arka Krishika were recorded as susceptible with gall index 3.6, 3.6 and 3.4 respectively. Other three cultivars viz. Orange Sun Brust, Pride of Sikkim and Saffron were recorded as moderately resistant with gall index 3.0. Upon evaluation the cultivar Orange Sun Brut recorded maximum plant growth parameters followed by the cultivar Saffron and minimum plant growth parameters were recorded in the cultivar Pink Melody. Conclusion: From this experiment it is concluded that no one cultivar found to be resistant against root-knot nematode. Three cultivars were found to be moderately resistant and others were susceptible. Moderately resistant cultivars can be planted in nematode infested areas as alternative to susceptible cultivars.

Comparative Metabolomic Responses of Three Rhododendron Cultivars to the Azalea Lace Bug (Stephanitis pyrioides).

Rhododendron, with its high ornamental value and ecological benefits, is severely impacted by the azalea lace bug (Stephanitis pyrioides), one of its primary pests. This study utilized three Rhododendron cultivars, 'Zihe', 'Yanzhimi', and 'Taile', to conduct a non-targeted metabolomic analysis of leaf samples before and after azalea lace bug stress using headspace solid-phase microextraction combined with gas chromatography-mass spectrometry (HS-SPME/GCMS) and liquid chromatography-mass spectrometry (LCMS). A total of 81 volatile metabolites across 11 categories and 448 nonvolatile metabolites across 55 categories were detected. Significant differences in metabolic profiles were observed among the different cultivars after pest stress. A total of 47 volatile compounds and 49 nonvolatile metabolites were upregulated in the most susceptible cultivar 'Zihe', including terpenes, alcohols, nucleotides, amino acids, and carbohydrates, which are involved in energy production and secondary metabolism. Conversely, 'Yanzhimi' showed a downtrend in both the differential volatiles and metabolites related to purine metabolism and zeatin biosynthesis under pest stress. The resistant cultivar 'Taile' exhibited moderate changes, with 17 volatile compounds and 17 nonvolatile compounds being upregulated and enriched in the biosynthesis of amino acids, pentose, glucuronate interconversions, carbon metabolism, etc. The phenylalanine metabolic pathway played an important role in the pest resistance of different susceptible cultivars, and relevant metabolites such as phenylethyl alcohol, methyl salicylate, and apigenin may be involved in the plant's resistance response. The results of this study provide a new perspective on the metabolomics of Rhododendron-insect interactions and offer references for the development of pest control strategies.

Identification and characterization of microRNAs in virus-resistant and susceptible barley cultivars

Identification and characterization of microRNAs in virus-resistant and susceptible barley cultivars

Transcription factor CpWRKY50 enhances anthracnose resistance by promoting jasmonic acid signaling in papaya

Abstract Colletotrichum brevisporum is an important fungal pathogen that causes anthracnose and has led to serious postharvest losses of papaya (Carica papaya L.) fruit in recent years. WRKY transcription factors (TFs) play vital roles in regulating plant resistance to pathogens, but their functions in papaya anthracnose resistance need further exploration. In this study, we identified a WRKY TF, CpWRKY50, which belongs to the WRKY IIc subfamily. During infection with C. brevisporum, expression of CpWRKY50 in anthracnose-resistant papaya cultivars was significantly higher than that in susceptible cultivars. CpWRKY50 was induced by methyl jasmonate, and CpWRKY50 localized in the nucleus. In yeast, full-length CpWRKY50 had transactivation activity, but CpWRKY50 variants truncated at the N or C termini did not. CpWRKY50 positively regulated papaya resistance to C. brevisporum, as demonstrated by transient overexpression of CpWRKY50 in papaya and heterologous expression of CpWRKY50 in tomato. Moreover, endogenous jasmonic acid (JA) and JA-isoleucine levels in the fruits of transgenic tomato OE lines were higher than in wild type both before and after inoculation with C. brevisporum, indicating that increased CpWRKY50 expression promotes JA accumulation. Furthermore, our results revealed CpWRKY50 directly binds to W-box motifs (TTGACC) in the promoters of two JA signaling-related genes, CpMYC2 and pathogenesis-related 4 CpPR4, thereby activating their expression. Our data support that CpWRKY50 positively regulates anthracnose resistance in papaya by promoting JA signaling. These results broaden our understanding of papaya disease resistance mechanisms and will facilitate the genetic improvement of papaya through molecular breeding.

Novel resistance loci for quantitative resistance to Septoria tritici blotch in Asian wheat (Triticum aestivum) via genome-wide association study

BackgroundSeptoria tritici blotch (STB) disease causes yield losses of up to 50 per cent in susceptible wheat cultivars and can reduce wheat production. In this study, genomic architecture for adult-plant STB resistance in a Septoria Association Mapping Panel (SAMP) having 181 accessions and genomic regions governing STB resistance in a South Asian wheat panel were looked for.ResultsField experiments during the period from 2019 to 2021 revealed those certain accessions, namely BGD52 (CHIR7/ANB//CHIR1), BGD54 (CHIR7/ANB//CHIR1), IND92 (WH 1218), IND8 (DBW 168), and IND75 (PBW 800), exhibited a high level of resistance. Genetic analysis revealed the presence of 21 stable quantitative trait nucleotides (QTNs) associated with resistance to STB (Septoria tritici blotch) on all wheat chromosomes, except for 2D, 3A, 3D, 4A, 4D, 5D, 6B, 6D, and 7A. These QTNs were predominantly located in chromosome regions previously identified as associated with STB resistance. Three Quantitative Trait Loci (QTNs) were found to have significant phenotypic effects in field evaluations. These QTNs are Q.STB.5A.1, Q.STB.5B.1, and Q.STB.5B.3. Furthermore, it is possible that the QTNs located on chromosomes 1A (Q.STB.1A.1), 2A (Q.STB_DH.2A.1, Q.STB.2A.3), 2B (Q.STB.2B.4), 5A (Q.STB.5A.1, Q.STB.5A.2), and 7B (Q.STB.7B.2) could potentially be new genetic regions associated with resistance.ConclusionOur findings demonstrate the importance of Asian bread wheat as a source of STB resistance alleles and novel stable QTNs for wheat breeding programs aiming to develop long-lasting and wide-ranging resistance to Zymoseptoria tritici in wheat cultivars.

No Common Candidate Genes for Resistance to Fusarium graminearum, F. proliferatum, F. sporotrichioides, and F. subglutinans in Soybean Accessions from Maturity Groups 0 and I: Findings from Genome-wide Association Mapping.

Seedling diseases and root rot, caused by species of Fusarium, can limit soybean (Glycine max L.) production in the United States. Currently, there are few commercially available cultivars resistant to Fusarium. This study was conducted to assess the resistance of soybean maturity group (MG) accessions from 0 and I to Fusarium proliferatum, F. sporotrichioides, and F. subglutinans, as well as to identify common quantitative trait loci (QTLs) for resistance to these pathogens, in addition to F. graminearum, using a genome-wide association study (GWAS). A total of 155, 91, and 48 accessions from the United States Department of Agriculture (USDA) soybean germplasm collection from MG 0 and I were screened with a single isolate each of F. proliferatum, F. sporotrichioides, and F. subglutinans, respectively, using the inoculum layer inoculation method in the greenhouse. The disease severity was assessed 21 days postinoculation and analyzed using nonparametric statistics to determine the relative treatment effects (RTEs). Eleven and seven accessions showed significantly lower RTEs when inoculated with F. proliferatum and F. subglutinans, respectively, compared with the susceptible cultivar 'Williams 82'. One accession was significantly less susceptible to both F. proliferatum and F. subglutinans. The GWAS conducted with 41,985 single-nucleotide markers identified one QTL associated with resistance to both F. proliferatum and F. sporotrichioides, as well as another QTL for resistance to both F. subglutinans and F. graminearum. However, no common QTLs were identified for the four pathogens. The USDA accessions and QTLs identified in this study can be utilized to selectively breed resistance to multiple species of Fusarium.[Formula: see text] Copyright © 2024 The Author(s). This is an open access article distributed under the CC BY 4.0 International license.

Susceptibility of Table Beet Cultivars to Foliar Diseases in New York

A collection of foliar diseases affects table beet production in New York. The predominant diseases are bacterial leaf spot (BLS) caused by the bacterium Pseudomonas syringae pv. aptata; Cercospora leaf spot (CLS) caused by the fungus Cercospora beticola; and Phoma leaf spot (PLS) caused by the fungus Phoma betae (syn. Neocamarosporium betae). Little is known of the potential to use host resistance in an integrated program for table beet disease management. Field trials evaluated the susceptibility of selected table beet cultivars (Bohan, Bresko, Manolo, Pablo, Red Cloud, Ruby Queen, Subeto, and Bazzu/Irazu) to BLS, CLS, and PLS. Bohan was one of the least susceptible to BLS but was moderately and highly susceptible to CLS and PLS, respectively. Bresko was moderately susceptible to BLS and CLS and was among the least susceptible to PLS. Manolo was one of the least susceptible to BLS and PLS but was highly susceptible to CLS. Pablo and Red Cloud were moderately or highly susceptible to all diseases. Subeto was moderately susceptible to BLS and CLS but was the least susceptible to PLS. Ruby Queen, the processing standard, was the least susceptible to BLS and PLS and was moderately susceptible to CLS. Bazzu and Irazu (2021 and 2022, respectively) were among the least susceptible to all diseases and were the only cultivars tested with reduced CLS susceptibility. These findings emphasize the need to evaluate table beet cultivar susceptibility to the spectrum of foliar diseases. This information may underpin cultivar selection based on the varying importance of diseases in specific production situations.

Integrated Transcriptome and Metabolome Analysis Revealed the Key Role of the Flavonoid Biosynthesis in Olive Defense Against Alternaria alternata.

The olive tree is an important oil woody plant with high economic value, yet it is vulnerable to the attack of numerous fungi. The successful control of olive fungal diseases requires a comprehensive understanding of the disease resistance mechanisms in plants. Here, we isolated Alternaria alternata from the diseased leaves of olive plants, and screened a resistant ("Leccino") and susceptible ("Manzanilla de Sevilla") cultivar from eight olive cultivars to explore their resistance mechanisms. Transcriptomic and metabolomic analyses identified the flavonoid biosynthesis as a key defense pathway against A. alternata. Five important transcription factors associated with flavonoid biosynthesis were also determined. The overexpression of OeWRKY40 significantly enhanced the disease resistance of the susceptible cultivar and upregulated the expression of genes involved in flavonoid biosynthesis and the accumulation of related metabolites. LUC assays further proved that OeWRKY40 can activate the expression of OeC4H. These results help to better clarify the molecular mechanisms of flavonoid biosynthesis against A. alternata. Our study provides key information for further exploration of the molecular pathways of olive plants and their resistance to fungi, an important factor for molecular breeding and utilization of resistant cultivars.

Morphological and molecular characterization of Macrophomina phaseolina (Tassi) Goid isolates causing charcoal rot of cowpea (Vigna unguiculata (L.) Walp) in Ghana

The study of the variations in Macrophomina phaseolina, the causal agent of charcoal rot, is critical in understanding the ecology of the isolates and the epidemiology of the diseases they cause. This study sought to identify and characterize M. phaseolina isolates using both molecular and morphological approaches and to determine the virulence of the isolates. Macrophomina phaseolina was isolated from cowpea-diseased stem tissues. Eleven M. phaseolina isolates from the major cowpea growing areas (Manga, Nyankpala, Yendi, Damongo, Tumu, Wa, Akomadan and Ejura) were morphologically and molecularly characterized. DNA of the M. phaseolina isolates were amplified using species-specific PCR primers MpKF1 (5'-CCGCCAGAGGACTATCAAAC-3') and MpKR1 (5'-CGTCCGAAGCGAGGTGTATT-3') and sequencing of the M. phaseolina specific amplicons was obtained. This was followed by searching against the NCBI nucleotide sequence database. Isolates were tested for their pathogenicity on a susceptible cowpea cultivar (IT97K-499-35). Virulence of the M. phaseolina isolates was expressed as the percentage of sown seeds that expressed seed rot and damping-off symptoms 14 days after planting. All isolates were confirmed as M. phaseolina based on the amplicon size obtained, and the sequenced amplicons showed an average of 99% homology to the available M. phaseolina sequences. The radial growth of isolates and the percentage of seed rot and damping off they caused on the IT97K-499-35 cultivar varied significantly. The percentage seed rot and damping off were positively correlated (r = 0.74 and 0.75) with the radial growth and colour intensity of the isolates, respectively. Macrophomina phaseolina infection and disease expression may be predicted by the colour and colour intensity of isolates as well as cowpea genotypes. Isolate Mp_3Mc (dense black colour) was the most virulent while isolate Mp_6Ec (grey colour) was the least virulent, resulting in 76.7% and 26.7% seed rot and damping off, respectively. The three clades resolved through the phylogenetic tree matched the distinct colour types of M. phaseolina which correlated with virulence. Isolates of M. phaseolina are diverse and differ in their pathogenicity. Efforts must be geared towards developing cowpea varieties that have resistance to charcoal rot disease.

Biological control of downy mildew Peronosclerospora spp. L. by application of endophytic agents in corn

ABSTRACT This research was carried out to evaluate endophytic biocontrol agents (eBCA) in inducing corn plant resistance to downy mildew Peronosclerospora spp. In this context, the estimation of total phenolic content and peroxidase (POD) enzyme activity was carried out in contrast to control without induction treatments. Corn seed treatment using three eBCA II.D2.2, DC.5, and AC.3 on susceptible and tolerant cultivars in a screenhouse and field showed variation in downy mildew reduction. The results showed that Trichoderma asperellum AC.3 treatment suppressed downy mildew by 2.7–23.0% in the screen house. In the field, resistance induction by applications of Bacillus cereus II.D2.2, Fusarium verticillioides DC.5, and T. asperellum AC.3 suppressed the infection from 23% to 79% on susceptible cultivars. However, the T. asperellum AC.3 treatment reported the highest suppression of 55–79% on tolerant and susceptible cultivars. Resistant induction with F. verticillioides DC.5 increased POD enzyme activity by 300.5% and suppressed the infection by 63% in the field. The pathogen suppression ability through the induction with eBCA was related to triggering the increase of total phenolic content and POD enzyme activity in plant tissues. Applications of B. cereus II.D2.2, F. verticillioides DC.5, and T. asperellum AC.3 suppressed downy mildew infection in the field through the induction of total phenolic content and POD enzyme activity in corn. Meanwhile, the best treatment using T. asperellum AC.3 was lower by 30–70% than the application of synthetic fungicide as control.

Susceptibility of Oilseed Radish (Raphanus sativus subsp. oleiferus) Cultivars and Various Brassica Crops to Plasmodiophora brassicae.

Oilseed radish (OR; Raphanus sativus var. oleiferus) is grown as a cover crop and develops a unique taproot, absorbing nitrogen left by the previous crop. The aim of this project was to investigate the resistance of OR cultivars (cvs.) to Plasmodiophora brassicae, the causal agent of clubroot disease. Twelve market cvs. were compared with cvs. of clubroot-resistant (CR) winter oilseed rape (OSR; Brassica napus) and other selected species of the Brassicaceae family. The study was performed as a replicated bioassay in a growth chamber using a specially composed mixture of field soils holding the natural inoculum of P. brassicae. The results show that the OR cultivars were infected, which implies that OR multiplies the pathogen. The susceptibility of the OR cultivars was not significantly different from that of the CR OSR cultivars Alister and Archimedes, but it was significantly different from that of the OSR cv. Mendel. The disease severity index (DSI) for OR cultivars ranged from 2.3 to 9.3, and disease incidence was 3-17%. The best performance was shown by black radish (Raphanus sativus var. niger) with a DSI of 0.3. For sustainable brassica crop production, we suggest avoiding OR as a cover crop in crop rotations, including OSR or other brassica crops, since there is a risk of increasing inoculum in the soil.

The response of the pepper with and without Me1 gene to Mi-1.2-virulent Meloidogyne incognita (Kofoid & White,1919) (Tylenchida: Meloidogynidae) isolates

Root-knot nematodes are important organisms that infect vegetables. Due to the intense use of Mi-1.2, virulent populations that break resistance have become widespread and have become an important factor limiting the use of this gene. Me1 resistance gene on pepper provides resistance against Meloidogyne arenaria (Neal, 1889) Chitwood, 1949 Meloidogyne incognita (Kofoid & White,1919) Chitwood, 1949 and Meloidogyne javanica (Treub, 1885) Chitwood, 1949 (Tylenchida: Meloidogynidae) species. However, there is limited information on the effectiveness of the Me1 gene against Mi-1.2 virulent populations. Therefore, it is important to know the reaction of pepper cultivars carrying the Me1 resistance gene against Mi-1.2 virulent populations. In this study, the response of resistant pepper cultivar MT-01 F1 (bearing Me1) and susceptible pepper cultivar Safran F1 against both Mi-1.2 natural virulent M. incognita isolates and Mi-1.2 selected virulent M. incognita isolate was investigated under controlled conditions. This study was conducted in Akdeniz University Faculty of Agriculture Department of Plant Protection Nematology Laboratory in 2021. All isolates caused many egg masses and galls on the resistant tomato cultivar Seval F1 as expected, and the susceptible pepper cultivar Safran F1. Five isolates were found to cause egg masses and gall formation, while the V3 isolate did not multiply on the resistant pepper cultivar MT-01 F1. The results showed that pepper cultivars carrying the Me1 gene exhibited different responses against Mi-1.2 virulent isolates.

Genome-wide association study of Verticillium longisporum resistance in Brassica genotypes.

Verticillium stripe, caused by Verticillium longisporum, presents an emerging threat to Canadian canola (Brassica napus). Initially detected in Manitoba in 2014, the presence of this pathogen has since been confirmed across western Canada. Infections by V. longisporum can result in yield losses of up to 50%, which is a cause for concern given the susceptibility of most commercial Canadian canola cultivars. The objective of this study was to screen a collection of 211 Brassica genotypes for their reactions to V. longisporum, and to use genome-wide association study (GWAS) to identify single nucleotide polymorphism (SNP) markers for resistance. The plant material consisted of 110 rutabaga (B. napus ssp. napobrassica), 35 canola, 40 Brassica rapa, and 15 Brassica oleracea accessions or cultivars, alongside 11 hosts of the European Clubroot Differential (ECD) set. These materials were screened for resistance under greenhouse conditions and were genotyped using a 19K Brassica SNP array. Three general linear models (GLM), four mixed linear models (MLM), and three GWAS methods were employed to evaluate the markers. Eleven non-commercial Brassica accessions and 9 out of 35 commercial canola cultivars displayed a low normalized area under the disease progress curve (AUDPCnorm.). The non-commercial accessions could prove valuable as potential sources of resistance against V. longisporum. Forty-five SNP markers were identified to be significantly associated with V. longisporum resistance using single-SNP based GWAS analysis. In comparison, haplotype-based GWAS analyses identified 10 to 25 haplotype blocks to be significantly associated with V. longisporum resistance. Between 20% and 56% of QTLs identified by the more conventional single-SNP based GWAS analysis were also detected by the haplotype-based GWAS analysis. The overlapping genomic regions identified by the two GWAS methods present promising hotspots for marker-assisted selection in the future development of Verticillium stripe-resistant canola.