Calf Survival Research Articles

Climate change adaptation stories: Co-creating climate services with reindeer herders in Finland

Reindeer husbandry in the Arctic region is strongly affected by the local climate. Reindeer herders are used to coping with adverse weather, climate, and grazing conditions through autonomous adaptation. However, today's rapidly changing Arctic environment poses new challenges to the management of herding activities. Finding means for combining traditional and scientific knowledge without depriving any of the systems of its fundamental strengths is hence deemed necessary. In this work, we apply a transdisciplinary framework for knowledge co-production involving international researchers and reindeer herders from different cooperatives in northern Finland. Through ‘climate change adaptation stories’, we co-explore how climate predictions can inform herders' decision making during the herding season. Relevant decisions include the anticipation of summer harvest time, the inopportune periods of cold weather in spring, and insect harassment in summer. Despite their potential benefits for climate-sensitive decisions, climate predictions have seen limited uptake, mainly due to their probabilistic nature and lower quality compared with shorter-term weather forecasts. The analysis of two different adaptation stories shows that seasonal predictions of temperature for May and June can successfully advise about the likelihood of having an earlier than normal harvest. This information can be obtained up to three months in advance, helping herders to better arrange their time for other activities. Likewise, sub-seasonal predictions of temperature during April and May can be useful to anticipate the occurrence of backwinter episodes, which can support herders in deciding whether to feed reindeer in pens for longer, avoiding putting the survival of calves at risk. This study, which would benefit from co-evaluation in real world settings and consideration of additional adaptation stories, sets the basis for a successful co-production of climate services with Arctic reindeer herders. This research shows the potential to enhance the resilience of Polar regions, offering opportunities for adaptation while supporting the sustainability and culture of traditional practices of Arctic communities.

Behavioral and Morphological Traits of Nellore Cattle That Can Influence Calf Survival and Performance from Birth to Weaning

This study aimed to identify behavioral and morphological traits of Nellore cattle that can influence calves’ survival and pre-weaning performance. It was performed in two units of a large-scale cow–calf operation farm located in the Central-West region of Brazil, with 975 cow–calf dyads, by scoring cows’ maternal protective behavior, body condition, horns, udder suspension (US), teat size (TS) and calves’ vigor. TS was used to determine teat symmetry (TSm). The production unit where calves were born, their birth date, sex, and birth (BW) and weaning weights were also recorded. Cow ages at calving and production units were used to categorize the cows into twelve classes (Cage). The Shapiro–Wilk test alongside tables of frequencies were used to determine if continuous and categorical variables followed a normal distribution, respectively. Two datasets were considered in statistical analyses: (i) 975 dyad records were used to identify potential factors influencing calf survivability and (ii) 936 records of weaned calves were used to assess pre-weaning performance. Generalized linear models were used to assess the effect of target traits on the calves’ weight adjusted for 210 days of age (W210, kg) and pre-weaning average daily gain (preADG, kg/day). Tukey’s test was used to compare W210 and preADG means. Pearson’s correlation coefficients were estimated between BW, W210 and preADG. Cage, US and the TSm significantly affected pre-weaning calf performance (p < 0.01). Older cows (independently of the production unit) and those with intermediate US and symmetrical teats weaned heavier calves. As expected, positive and significant correlation was observed between BW and preADG (r = 0.35), which, in turn, was highly correlated with W210 (r = 0.99). We concluded that none of the behavioral and morphological traits influenced calf survivability, but cow age, US and TSm impacted pre-weaning performance, with 8- to 11-year-old cows and those with intermediate US and symmetric teats leading to better calf performance at weaning.

Novel multilayer network analysis to assess variation in the spatial co-occurrences of close kin in wild caribou populations

Understanding how individuals within populations are connected genetically and through shared space-use is critical to understanding the demographic patterns of at-risk populations. In recent years, non-invasive genetic sampling methods have allowed us to begin addressing these questions. Using a network analysis framework, we examined the spatial co-occurrence and genetic relatedness of boreal and central mountain caribou (Rangifer tarandus) in populations varying in sizes and trend from across western Canada. Using 15 microsatellites loci and a sex-specific marker, we developed pedigree networks for each population, including first to third order relationships. We constructed networks of individual spatial co-occurrence, and using multilayer network analysis, we determined the degree to which caribou that co-occurred spatially were related. Caribou populations varied in the extent and classes of familial relationships which co-occurred in space. In most populations, spatial co-occurrences were greater than expected only for parent-offspring relationships. A sex-specific analysis of the longest sampled population revealed that this was driven by a significant overlap between mothers and their offspring. Whereas in populations where very few parent-offspring relationship were detected, no significant overlap was found between any relationship categories. The lack of overlap in these populations may be an indication of poor calf survival. On the other hand, the higher degree of overlap with more distant relations (i.e., grandparents) seen in some populations may indicate a population that lacks mobility. Our research presents a new approach to explore both spatial and genetic overlap at the individual level in support of the conservation of threatened populations.

Identifying demographic and environmental drivers of population dynamics and viability in an endangered top predator using an integrated model

AbstractKnowledge about the demographic and environmental factors underlying population dynamics is fundamental to designing effective conservation measures to recover depleted wildlife populations. However, sparse monitoring data or persistent knowledge gaps about threats make it difficult to identify the drivers of population dynamics. In situations where small, declining, or depleted populations show continued evidence of decline for unknown reasons, integrated population models can make efficient use of available data to improve our understanding of demography, provide fundamental insights into factors that may be limiting recovery, and support conservation decisions. We used mark‐resight and aerial survey data from 2004 to 2018 to build a Bayesian integrated population model for the Cook Inlet population of beluga whales (Delphinapterus leucas), which is listed as endangered under the U.S. Endangered Species Act. We examined the effects of prey availability and oceanographic conditions on beluga vital rates and conducted a population viability analysis to predict extinction risk across a range of hypothetical changes in beluga survival and reproduction. Our results indicated that while the survival of breeding females (0.97; 95% CI: 0.95–0.99) and young calves (0.92; 0.80–0.98) was relatively high, the survival of nonbreeders (0.94; 0.91–0.97) and fecundity (0.28; 0.22–0.36) may be depressed. Furthermore, our analysis indicates that the population will likely continue to decline, with a 17–32% probability of extinction in 150 years. Our model highlights the utility of integrated population modeling for maximizing the usefulness of available data and identifying factors contributing to the failure of protected populations to recover. This framework can be used to evaluate proposed conservation and recovery efforts for this and other endangered species.

Reproductive endocrinology, morphological traits, and sexual selection in a population of wild South African giraffes

Sex steroids are pervasive in mammals and evolutionarily conserved, but differences in the nuances of endocrine profiles characterize distinct species. Two sex steroids, testosterone and progesterone, feature prominently in the life history of mammalian taxa, but neither one has been analyzed from wild giraffes. Our study was designed to address this gap in knowledge by examining how these sex steroids are related to biological features and giraffe life history. We conducted the research at Rooipoort Nature Reserve a 44,000 ha private nature reserve in South Africa on a population of South African giraffes (Giraffa camelopardalis giraffa). Eleven adult giraffe cows and seven adult bulls were immobilized and various biological samples and morphological measurements were obtained. We analyzed both testosterone and progesterone using Ultra High Performance Liquid Chromotography – Tandem Mass Spectrometry (UHPLC-MS/MS). We found that non-pregnant females had lower progesterone concentrations than pregnant females and that those in the last trimester of pregnancy showed a slight drop in progesterone, as well as an increase in testosterone. Among males, chronological age was correlated with testicle size, testosterone concentrations, and ossicone volume. We propose that the progesterone decline functions partly to accelerate resumption of ovulation because giraffes become pregnant while lactating, and that the testosterone elevation provides an endocrine mileu for female defense of neonatal calves, given that lion predation is a major threat to calf survival. We suggest that male reproductive strategies are mediated by the age-related impacts of testosterone on growth in both body mass and ossicone volume as a consequence of sexual selection. We conclude by noting that the robust and solid ossicones of male giraffes function in mate competition as wedges that are used to topple opponents by raising their legs and placing them in an off-balanced position that can seriously injure them when falling to the ground.

Risk factors and genetic parameter estimates for preweaning survival of Fogera calves

This study utilised mortality records of 1 043 Fogera calves maintained at Andassa Livestock Research Center from 1984 to 2021 to investigate the factors that influence survival and estimate genetic parameters for the preweaning survival of Fogera calves. Survival was defined as the probability of surviving in a given length of time. Survival analysis was done using the Weibull proportional hazard model with Survival Kit version 6.1 software. Genetic variance and heritability estimates were estimated using the sire model. The proportion of right-censored calves up to 1, 4, and 8 months of age was 90.8, 87.8, and 83.5%, respectively. Around 55.8% of all deaths (16.5%) occurred up to one month of age. In addition to birth year, sex, season, and weight at birth were the most important risk factors for calf mortality. The heritability estimates for the survival of calves at 1, 4, and 8 months of age were 0.26 ± 0.14, 0.22 ± 0.13, and 0.38 ± 0.18, respectively. Moderate heritability was estimated at the age of eight months, implying that the inclusion of survival traits in the selection criteria and inclusion in the breeding goal will enhance the preweaning survival rate of calves. Similarly, higher differences in estimated breeding values of sires for survival suggest that the selection of sires with higher estimated breeding values could improve the survival potential of calves. The decreased genetic trend of 3.34% year−1 for the survival potential of Fogera calves during the study periods suggested that survival traits should be included in the breeding goal to reduce the mortality rate.

Сочетанное применение поливалентной сыворотки и иммуномодуляторов в ранний постнатальный период выращивания телят

The paper demonstrates how a joint use of polyvalent serum and immunomodulators affects morbidity, survival, and resistance of calves in the early postnatal period. The objectives of the research are: to study how a joint administration of polyvalent serum and immunomodulators changes dynamics of morpho-biochemical and immunological blood parameters in calves; to determine an optimal ratio between the polyvalent serum and immunomodulators and frequency of administration so that to increase overall body resistance, ensure survival of calves in the early postnatal period; to assess cost-effectiveness of the joint use of polyvalent serum and immunomodulators. Research and production testing was done in Simmental calves. For this purpose one control group and five experimental groups were formed (at least 5 animals in each group). Polyvalent serum (20.0 mL) was once administered subcutaneously to the control calves on the first day of life and the animals of the experimental groups received the serum and immunomodulators according to the relevant dosing instructions. The obtained results demonstrate that the optimal protocols include a single administration of “Ribotan” in combination with serum on the first day of life, as well as a double administration of a polyvalent serum 7 days later, alternating “Fosprenil” with “Immunophane”. Administration of polyvalent serum together with an immunomodulator to newborn calves can reduce the morbidity by 70.0% and achieve 100.0% survival, improving this indicator by 22.3% compared to the control. Cost-effectiveness assessment of the veterinary measures specified in these protocols shows that each rouble spent on the measures saves 25.29 roubles. To increase nonspecific resistance of calves in the early postnatal period, preference shall be given to those veterinary medicinal product that can not only normalize the immune system, but also have a combined positive effect on homeostasis in general, stimulate the growth and development of young animals at the early stages of ontogenesis.

Bayesian estimates of genetic effects on calf survival in Hardhenu (Bos taurus × Bos indicus) cattle.

The aim of the present study is to carry out a risk analysis and Bayesian estimates of genetic effects on calf survival in Hardhenu cattle using data records of 2593 calves born to 102 sires and 790 dams over 25 years. The Bayesian analysis using Gibbs sampling was employed towards threshold animal models to estimate direct and maternal effects on animal survival of studied population. The results showed that mortality from birth to 3 months of age (S1), birth to 6 months of age (S2) and birth to 12 months of age (S3) was 10.22, 12.88 and 14.65%, respectively. It was revealed from the results of logistic regression analysis that the male animals had greater risk (1.41-1.61 times) of mortality during S1, S2 and S3 as compared to female animals. However, calves born during rainy season had higher risk (1.36 to 1.44 times) of mortality than calves born during winter season. Among died animals, the simultaneous infection of respiratory and digestive diseases had leading contribution (26.84%-30.19%) to deaths while alone of them contributed to 18%-20% only. On evaluation of six threshold animal models, model 1 was found to be most appropriate model and the Bayesian estimates (95% highest posterior density confidence intervals) of direct additive heritability for S1, S2 and S3 under model 1 were 0.15 ± 0.07 (0.04-0.23), 0.23 ± 0.12, (0.02-0.44) and 0.26 ± 0.06 (0.08-0.41), respectively. It was concluded that the inclusion of survival traits in existing selection criteria may be helpful to increase calf survival and ultimately economic gain in the dairy herd.

Genome-wide association study identifies functional genomic variants associated with young stock survival in Nordic Red Dairy Cattle

Identifying quantitative trait loci (QTL) associated with calf survival is essential for both reducing economic loss in cattle industry and understanding the genetic basis of the trait. To identify mutations and genes underlying young stock survival (YSS), we performed GWAS using de-regressed estimated breeding values of a YSS index and its component traits defined by sex and age in 3,077 Nordic Red Dairy Cattle (RDC) bulls and 2 stillbirth traits (first lactation and later lactations) in 5,141 RDC bulls. Two associated QTL regions on Bos taurus autosome (BTA) 4 and 6 were identified for the YSS index. The results of 4 YSS component traits indicate that same QTL regions were associated with bull and heifer calf mortality, but the effects were different over the growing period and suggested an additional QTL on BTA23. The GWAS on stillbirth identified 3 additional QTL regions on BTA5, 14, and 24 compared with YSS and its component traits. The conditional test of BTA6 showed at least 2 closely located QTL segregating for YSS component traits and stillbirth. We found 2 independent QTL for stillbirth on BTA23. The post-GWAS revealed LCORL, PPM1K, SSP1, MED28, and LAP3 are putative causal genes on BTA6, and a frame shift variant within LCORL, BTA6:37401770 (rs384548488) could be the putative causal variant. On BTA4, the GRB10 gene is the putative causal gene and BTA4:5296018 is the putative causal variant. In addition, NDUFA9 and FGF23 on BTA5, LYN on BTA14, and KCNK5 on BTA23 are putative causal genes for QTL for stillbirth. The gene analysis also proposed several candidate genes. Our findings shed new light on the candidate genes affecting calf survival, and the knowledge could be utilized to reduce calf mortality and thereby enhance welfare of dairy cattle.

Understanding the Immunomodulatory Effects of Bovine Colostrum: Insights into IL-6/IL-10 Axis-Mediated Inflammatory Control.

Bovine colostrum (COL), the first milk secreted by lactating cows postpartum, is a rich source of bioactive compounds that exert a significant role in the survival, growth, and immune development of neonatal calves. This study investigated the immunomodulatory effects of COL on cytokine production in vitro using a Caco-2/THP-1 macrophage co-culture model stimulated with Phorbol 12-myristate 13-acetate (PMA). COL pretreatment significantly reduced IL-6 (241.3 pg/mL) production induced by PMA (p < 0.05), while increasing IL-10 production (45.3 pg/mL), in comparison to PMA control (441.1 and 12.5 pg/mL, respectively). Further investigations revealed that the IL-6 suppressive effect of colostrum was heat-sensitive and associated with components of higher molecular mass (100 kDa). Moreover, colostrum primarily influenced THP-1 macrophages rather than Caco-2 epithelial cells. The effects of colostrum on IL-6 production were associated with reduced NF-κB activation in THP-1 macrophages. In calf-FMT transplanted C57BL/6 murine model, colostrum decreased intestinal permeability, reduced immune cell infiltration and intestinal score, and suppressed IL-6 (142.0 pg/mL) production during S. typhimurium infection, in comparison to control animals (215.2 pg/mL). These results suggest the immunomodulatory activity of bovine colostrum and its potential applications in inflammatory disorders. Further studies are needed to elucidate the underlying mechanisms and validate the findings in bovine models.

Degree of leukochimerism with calf age in Angus-crossbred twin sets.

Twinning in cattle is infrequent and usually undesired. It can result in an increased occurrence of abortion and dystocia, reduced calf survival and a high likelihood of freemartinism in mixed-sex twins. Twin gestations are also commonly associated with the formation of placental vascular anastomoses (PVA) between twins. Through PVA they share blood, hormones (leading to freemartinism in mixed sex twins) and hematopoietic stem cells, which are the progenitors of white blood cells. The sharing of stem cells between twins can result in leukochimeric twin sets. These are twins that have white blood cells derived from both self and the co-twin owing to the fetal migration of hematopoietic stem cells from the extraembryonic mesoderm of the yolk sac to final sites like bone marrow and thymus. This study examined the degree to which this leukochimerism changes with age. DNA was extracted from hair bulbs containing mesenchymal dermal papilla to determine the individual's true genotype and blood samples were obtained at six time points from 1 week to 8 months of age to assess leukochimerism. Samples were genotyped using a medium density SNP chip, and quantitative estimates of allele frequency were determined using SNPs for which members of a twin set had alternative homozygous genotypes. The results indicate statistically significant changes in the proportion of self and co-twin with age and suggest that by 2-4 months of age the genotypic mix in white blood cells represents the hematopoetic stem cell population resident in the individual (i.e. permanently found in thymus and bone marrow).

Birth date determines early calf survival in migratory caribou.

The decline of most caribou (Rangifer tarandus) populations underlines the need to understand the determinants of key demographic parameters. In migratory caribou, we have limited information on rates and drivers of pre-weaning mortality. We fitted 60 pregnant females of the Rivière-aux-Feuilles caribou herd with GPS camera collars to track the survival of calves from birth to weaning in 2016-2018. Over the three years, calf survival rate before weaning, i.e. to 01-Sep, approximately three months of age, was 0.63 (CI 0.50-0.77). Summer mortality risk was mainly influenced by calf birth date, with calves born earlier in the calving season having a lower mortality risk than those born later. Mortality also increased when calves experienced low or high temperature during calving. This study provides the first estimates of pre-weaning survival of migratory caribou calves in this herd, illustrating the value of new technologies to collect data otherwise difficult to obtain in widely distributed migratory populations. This approach can easily be extended to other large herbivores and predators. Our study brings new insights on how climate change may affect summer juvenile survival given the increased temperatures and faster changes in plant phenology expected in the future.

Bovine Colostrum: Human and Animal Health Benefits or Route Transmission of Antibiotic Resistance-One Health Perspective.

After calving, bovine colostrum is obtained from the mammary gland of the dam in the first days and fed to newborn ruminant to prevent microbial infections. Each bovine colostrum has a unique biochemical composition with high nutraceutical value compared to milk. However, bovine colostrum is influenced by various factors, such as environmental, individual, and genetic factors, as well as processing methods. Proper colostrum management is crucial for obtaining high-quality colostrum and mitigating bacterial contamination. This is important not only for the health and survival of calves but also for the health of humans who consume colostrum and its co-products. It is essential to ensure that the consumed colostrum is free of pathogens to reap its benefits. Health-promoting products based on colostrum have gained significant interest. However, colostrum can contain pathogens that, if not eliminated, can contribute to their transmission and spread, as well as antibiotic resistance. The aim of this review was to promote the animal and human health benefits of bovine colostrum by improving its microbial quality and highlighting potential routes of dissemination of antibiotic-resistant pathogens. Implementing hygienic measures is one of the key factors in mitigating colostrum bacterial contamination and obtaining safe and high-quality colostrum. This helps reduce the exposure of pathogens to newborn calves, other animals, and humans, in a One Health analysis.

The fitness consequences of human‐wildlife interactions on foraging common bottlenose dolphins (Tursiops truncatus) in Sarasota Bay, Florida

AbstractHuman‐wildlife interactions (HI) are becoming more prevalent with increasing human population. These interactions could have important eco‐evolutionary consequences that become apparent only after observing populations for multiple generations. Here, we analyzed 28 years (1993–2020) of data from the world's longest‐running study of a wild dolphin population to assess the fitness consequences of HI on common bottlenose dolphins (Tursiops truncatus) in Sarasota Bay, Florida. We investigated how human‐related foraging activities such as depredation, begging, and patrolling mediate reproductive output and reproductive success of conditioned (HI) and unconditioned (non‐HI) females. The analysis of 84 females and their 286 calves born during 1993–2020 found a confluence of effects on individual fitness. Reproductive output of females engaging in moderate levels of human‐related foraging was 94% greater than that of non‐HI females. However, high frequencies of human‐related foraging had a negative effect on female reproductive success by increasing the risk of calf death up to nine times when compared to non‐HI females, resulting in 31% less calf survival. These findings provide evidence that human‐wildlife interactions have considerable potential to catalyze population‐level changes by altering individual fitness, and demonstrate the value of comprehensive, long‐term data to better understand the ecological and evolutionary implications of human‐wildlife conflict.

Schistosomus Reflexus Combination with Hydrocephalic Fetus in Local Iraqi Dairy Cow: Case Report

Congenital abnormalities in Iraqi cow fetuses can occur due to various genetic, environmental, and infectious factors. These abnormalities can affect the development of different organs and systems in the fetus, resulting in structural or functional abnormalities that may affect the survival and health of the newborn calf. The Frisian cow at full term of pregnancy as per proprietor is given the historical backdrop of stressing and unfit to go through the ordinary physiological course of calving, vaginal assessment uncovers a twisted embryo in the pelvic hole that leaves lacking space for fetal control with some of fetal layer project outside from the vulva. Caesarean section relieves dystocia, and physical examination of the defective fetus confirms a case of genuine Schistosomus reflexus (SR) in a cow. The presence of hydrocephalic fetus in combination with anomalies (SR) has not been previously reported in dairy cattle from Iraq.

Effect of kelp gull harassment on southern right whale calf survival: a long-term capture-recapture analysis.

Kelp gulls (Larus dominicanus) commonly feed on the skin and blubber of surfacing southern right whales (SRW, Eubalaena australis) in the near shore waters of Península Valdés (PV), Argentina. Mothers and especially calves respond to gull attacks by changing their swimming speeds, resting postures and overall behaviour. Gull-inflicted wounds per calf have increased markedly since the mid-1990s. Unusually high mortality of young calves occurred locally after 2003, and increasing evidence points to gull harassment as a factor contributing to the excess deaths. After leaving PV, calves undertake a long migration with their mothers to summer feeding areas; their health during this strenuous exertion is likely to affect their probabilities of first-year survival. To explore the effects of gull-inflicted wounds on calf survival, we analysed 44 capture-recapture observations between 1974 and 2017, for 597 whales photo-identified in their years of birth between 1974 and 2011. We found a marked decrease in first-year survival associated with an increase in wound severity over time. Our analysis supports recent studies indicating that gull harassment at PV may impact SRW population dynamics.

An examination of certain of the assumptions made in the Bayesian approach used to assess the eastern North Pacific stock of gray whales (Eschrichtius robustus)

An assessment of the eastern North Pacific stock of gray whales (Eschrichtius robustus) is conducted using a variant of the Bayesian stock assessment method of Wade (2002). This variant is based on the BALEEN II population dynamics model and uses parameters whose values are more familiar to members of the International Whaling Commission’s Scientific Committee. The sensitivity of the results to changes to some of the specifications used in the assessment is examined. The results are shown to be relatively insensitive to the first year considered in the analysis and the year for which a prior on absolute abundance is specified. An alternative Bayesian assessment method which involves projecting the population forward from pre-exploitation equilibrium in 1600 is also considered. As expected from previous assessments, results from this method are unable to mimic the recent trends in absolute abundance obtained from shore counts and are inconsistent with the fact that the fishery was commercially extinct by the end of the 19th Century. Allowing for underestimation of historical commercial and aboriginal catches provides improved consistency with recent trends in abundance but does not resolve these problems completely. The impact of process error (in the form of temporally correlated fluctuations in calf survival) on the dynamics of the population is found to be largely inconsequential in terms of resolving the inconsistency between historical catches and recent estimates of abundance.

Abundance and demographic parameters of humpback whales from the Gulf of Maine, and stock definition relative to the Scotian Shelf

The Gulf of Maine is one of the principal summer feeding grounds for humpback whales (Megaptera novaeangliae) in the North Atlantic, and was one focus of effort in an ocean-basin-wide study known as the Years of the North Atlantic Humpback (YoNAH) project. Data from that project and from subsequent surveys were used to assess stock boundaries, abundance and demographic parameters for Gulf of Maine humpbacks. Surveys on the Scotian Shelf in the summers of 1998 and 1999 produced the first substantial dataset of identified individual humpbacks observed in this region, which lies between the well-studied areas of the Gulf of Maine and Newfoundland. The results gave a match rate of approximately 27% (14 of 52 individuals) between the Scotian Shelf and the Gulf of Maine, with evidence that many of the matched whales were transient in the Gulf of Maine; there were no matches to any other location in the North Atlantic. These data suggest that the range of most whales from the Gulf of Maine usually does not extend as far east as the Scotian Shelf or Newfoundland. Only one whale was observed on the Scotian Shelf in both the 1998 and 1999 surveys, and another seen in 1998 had also been sighted there in 1994. This low inter-annual match rate suggests that the abundance of humpback whales on the Scotian Shelf is larger than previously recognised. Three different but overlapping estimates of abundance for the Gulf of Maine population were calculated. Mark-recapture data from 1992/93 gave an estimate of abundance of 652 (CV = 0.29); however, this estimate is likely biased because of heterogeneity in sampling and in animal distribution. Photo-id data also provided a minimum population estimate of 497 humpbacks known to be alive in 1997; this estimate is also likely to be negatively biased because of heterogeneity. Finally, line-transect surveys conducted in 1999 yielded estimates of 816 (CV = 0.45) or 902 humpback whales (CV = 0.41, including a portion of the eastern Scotian Shelf stratum); these transect-based estimates are more consistent with the number of humpbacks (1,273, including dead animals) in the current photo-id catalogue for the Gulf of Maine. Overall, the size of the Gulf of Maine population is likely to be in the high hundreds, but no more precise estimate can be calculated at this time. The growth rate for the Gulf of Maine population was estimated using an interbirth interval method using data from 1992-2000. The estimate was either 1.00 (for a calf survival rate of 0.51) or 1.04 (for a calf survival rate of 0.875). Although confidence limits are not available (because maturation parameters could not be estimated), both estimates of population growth rate are outside the 95% confidence intervals of the previous estimate of 1.065 for the period 1979-1991 (Barlow and Clapham, 1997). It is unclear whether this apparent decline is an artefact resulting from a shift in distribution or is a real phenomenon; if the latter, it may be related to known high mortality among young-of-the-year whales in the waters of the US mid-Atlantic states. However, calf survival appears to have increased since 1996, presumably accompanied by an increase in population growth.

Evaluation of Mycobacterium avium subsp. paratuberculosis isocitrate lyase (IcL) and ABC transporter (BacA) knockout mutants as vaccine candidates.

There has been little success in controlling Johne's disease, caused by Mycobacterium avium subsp. paratuberculosis, due to suboptimal diagnostics and the ineffectiveness of available vaccines. By knocking out BacA and IcL, genes required for MAP survival in dairy calves, two live-attenuated vaccine candidates were created. This study evaluated the host-specific attenuation of MAP IcL and BacA mutants in mouse and calf models, as well as the elicited immune responses. Deletion mutants were generated in MAP strain A1-157 through specialized transduction and found viable in vitro. First, the mutants' attenuation and elicited cytokine secretion were assessed in a mouse model, 3 weeks after intraperitoneal inoculation with MAP strains. Later, vaccine strains were assessed in a natural host infection model where calves received 109CFU oral dose of MAP wild-type or mutant strains at 2 weeks old. Transcription levels of cytokines in PBMCs were evaluated at 12-, 14-, and 16-weeks post-inoculation (WPI) and MAP colonization in tissue was assessed at 4.5 months after inoculation. Whereas both vaccine candidates colonized mouse tissues similarly to wild-type strain, both failed to persist in calf tissues. In either mouse or calf models, gene deletion did not reduce immunogenicity. Instead, inoculation with ΔBacA induced a greater upregulation of proinflammatory cytokines than ΔIcL and wild-type in both models and a greater expansion of cytotoxic and memory T-cells than uninfected control in calves. ΔBacA and wild-type strains significantly increased secretion of IP-10, MIG, TNFα, and RANTES in mice serum compared to uninfected control. This agreed with upregulation of IL-12, IL-17, and TNFα in calves inoculated with ΔBacA at all time points. The ΔBacA also gave rise to greater populations of CD4+CD45RO+, and CD8+ cells than uninfected control calves at 16 WPI. Low survival rate of MAP in macrophages co-incubated with PBMCs isolated from the ΔBacA group indicated that these cell populations are capable of killing MAP. Overall, the immune response elicited by ΔBacA is stronger compared to ΔIcL and it is maintained over two different models and over time in calves. Further investigation is warranted to evaluate the BacA mutant's protection against MAP infection as a live attenuated vaccine candidate.

Effects of Two Feeding Patterns on Growth Performance, Rumen Fermentation Parameters, and Bacterial Community Composition in Yak Calves.

The health of young ruminants is highly dependent on early rumen microbial colonization. In this study, the effects of milk replacer on growth performance, rumen fermentation, and the rumen microflora in yak calves were evaluated. Sixty yak calves (body weight = 22.5 ± 0.95 kg, age = 30 ± 1 d) were assigned to the CON group (breastfed) or TRT group (milk replacer fed) and evaluated over 120 d. At 120 d, ruminal fluid samples were collected from 14 calves and then conducted for rumen fermentation and microbiota analyses. There was no difference in growth performance; however, calf survival was higher in the TRT group than in the CON group. The concentration of total volatile fatty acids and the molar proportion of butyric acid and lactic acid were increased with milk replacer feed in the TRT group (p < 0.05), but iso-valeric acid concentration was highest in the CON group (p < 0.05). Firmicutes and Bacteroidetes were the most dominant phyla in the CON and TRT groups, respectively. In the TRT group, Bacteroidetes, Prevotellaceae, Bacteroidia, Bacteroidetes, and Prevotella_1 were the dominant flora in the rumen of calves. The relative abundances of various taxa were correlated with rumen fermentation parameters; the relative abundance of Quinella and iso-butyrate levels were positively correlated (r = 0.57). The relative abundances of the Christensenellaceae_R-7_group and A/P were positively correlated (r = 0.57). In summary, milk replacer is conducive to the development of the rumen microflora, the establishment of rumen fermentation function, and the implementation of early weaning in yaks.