We present here the methodology that we have developed in the transdisciplinary Joliot Curie laboratory in partnership with the laboratory of physics of Ecole Normale Superieure Lyon (France) during the past four years for the preparation of sensor chips allowing the detection of single biomolecule interactions (DNA-DNA, DNA-proteins). Three confined measurement methods have been implemented, namely atomic force microscopy in liquid media which is used to capture the structural and mechanical properties of DNA and DNA-protein assemblies, interfacial impedance spectroscopy which probes the surface resistivity and capacitance of adsorbed DNA or lipidic layers, and high resolution surface plasmon microscopy which allows the detection of single biological molecules or assemblies of nanometer size such as DNA plasmids, DNA protein complexes (nucleosomes). Combining these three techniques we have afforded the possibility of direct in-situ synthesis and characterization of DNA-protein complexes such as nucleosomes, and the dynamical study of their stability in time, depending both on DNA sequence and its mechanical properties and on the ionic strength, buffer composition and pH of the liquid medium in contact with these complexes. The possibility of recording the dynamical response in liquid medium of a single molecular assembly under an external constraint modification, without need of a fluorescent marking is very challenging in the domain of biosensors since it should allow a definite improvement of the sensitivity and selectivity of DNA and protein sensor chips. We will discuss this assertion, based on experimental evidences and theoretical estimations of the sensitivity limits of the three experimental methods undertaken in this project.