We numerically study the quantum oscillations in superconducting vortex-mixed states with $d$-wave pairing. We show that in the parameter range of an underdoped cuprate superconductor, the commonly held assumption that the period is given by the underlying Fermi-surface area using the Onsager relation becomes invalid. Using this result, we conclude that the interpretation of the recent experimental data on YBCO as a signal of an underlying Fermi surface with four hole pockets created by a $(\ensuremath{\pi},\ensuremath{\pi})$ folding cannot be ruled out.
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