Highly fluorescent transition metal dichalcogenides (TMDs) based quantum dots (QDs) have been the focus of immense research owing to their bio-compatibility, non-toxicity, easy chemical synthesis and broad spectrum of applications which includes biosensing, optoelectronics, energy storage devices, etc. Herein, we present a one-step hydrothermal growth of in-situ blue fluorescent phosphorous doped-molybdenum di sulfide QDs (P-MoS2 QDs) in aqueous media. A range of functional groups over the surface of chemically synthesized P-MoS2 QDs helps in conserving its fluorescence along with high aqueous stability and solubility. Besides, remarkable photoluminescence (PL) properties of P-MoS2 QDs were then explored to concoct an optical sensor with excellent selectivity and sensitivity for glycated hemoglobin (HbA1c) followed by functionalization with boronic acid. The response of the sensor was found to be linear in the range of 2–15 %, which is under the typical physiological aliquot range (0.75–22.93 mM with limit of detection to be 77.5 μM, under optimized conditions. Moreover, PL quenching processes and TRPL data of P-MoS2 QDs were explored to elucidate the plausible quenching mechanism which suggests mixed kind of quenching processes. In conclusion, we envisaged that the present methodology can provide an effective and potent tool for HbA1c sensing in real biological (hemolysate/whole blood-lysate) samples.