Anthropogenic perturbations exert important impacts on sulfur geochemistry in marine sediments. In the study, chemical extraction was used to quantify four sulfur pools, i.e., pyrite, humic-acid sulfur (HA-S), fulvic-acid sulfur (FA-S), and residual organic sulfur (ROS), in surface sediments of eutrophic Jiaozhou Bay. Results show that riverine inputs are the main control on organic matter (OM) distribution in the sediments. OM enrichment in the eastern coast is mainly due to discharges of anthropogenic wastes. Spatial coupling of pyrite and FA-S vs. TOC points to the impacts of OM enrichment on formation and preservation of pyrite and FA-S. Poor spatial coupling of HA-S vs. TOC is due to low fractions of diagenetic OS in the pool. ROS is mainly from riverine inputs and anthropogenic OS has been superimposed on this pool. Spatial coupling among TOC, pyrite-S and FA-S is a sensitive indicator of anthropogenic impacts on benthic processes of the bay.