Subtidal Sediments Research Articles

Turbidity maxima in estuarine networks: Dependence on fluvial sediment input and local deepening/narrowing with an exploratory model

An estuarine turbidity maximum (ETM) results from various subtidal sediment transport mechanisms related to, e.g., river, tides, and density gradients, which have been extensively analysed in single-channel estuaries. However, ETMs have also been found in estuaries composed of multiple interconnected tidal channels, where the water and suspended fine sediments are exchanged at the junctions with possible occurrence of sediment overspill. The overall aim of this study is to understand the processes that determine the ETM dynamics in such channel networks. Specifically, focusing on the ETMs formation due to sediment transport by river flow and density-driven flow, the dependence of ETM locations in an idealised three-channel network on fluvial sediment input and the local deepening and narrowing of a seaward channel is investigated. It is found that the ETM dynamics in channels of a network is coupled, and hence, changes in one channel affect the ETM pattern in all channels. Sensitivity results show that, keeping river discharge fixed, a larger fluvial sediment input leads to the upstream shift of ETMs and an increase in the overall sediment concentration. Both deepening or narrowing of a seaward channel may influence the ETMs in the entire network. Furthermore, the effect of either deepening or narrowing of a seaward channel on the ETM locations in the network depends on the system geometry and the dominant hydrodynamic conditions. Therefore, the response of the ETM location to local geometric changes is explained by analysing the dominant sediment transport mechanisms. In addition to the convergence of sediment transport mechanisms in single-estuarine channels, ETM dynamics in networks is found to be strongly affected by net exchange of sediment between the branches of a network. We find that considering the sensitivity of net sediment transport to geometric changes is needed to understand the changing ETM dynamics observed in a real estuarine network.

A new species of the genus Stylicletodes Lang, 1936 (Copepoda, Harpacticoida, Cletodidae) from South Korea.

Marine benthic harpacticoid copepods are poorly known in Korea due to the difficulty in obtaining specimens. Currently, the genus Stylicletodes Lang, 1936, which is known to occur in subtidal sediments, has not been reported in this area so far. During surveys on the subtidal meiofauna, we found a new species of Stylicletodes from several subtidal muddy sediments in the Yellow Sea and South Sea. In this study, we describe both sexes of a new species of Stylicletodes collected from the Yellow Sea and South Sea of Korea. Stylicletodestrifidus sp. nov. differs from its congeners in the following characteristics: the trifid rostrum, relative length ratio of the endopods to exopods on legs 1-4, reduced armature formulae on legs 3-4, constricted shape at mid-length of the anal somite, and structure of the sexually dimorphic male leg 3 with a two-segmented endopod. The new species underwent loss of the maxilliped, which is very rare in harpacticoids and is probably an important clue for the phylogeny of the species of Stylicletodes.

Distribution patterns of microplastics in subtidal sediments from the Sado river estuary and the Arrábida marine park, Portugal

Understanding local accumulation patterns of microplastics in subtidal sediments is crucial to assess how available such particles are for ingestion by benthic feeders and to identify the potential pollution sources in the region upon which is urgent to act. The coastal urban centers of Setúbal and Sesimbra (Portugal) and the multiple activities taking place at the contiguous Sado estuary and in the sheltered waters of Professor Luiz Saldanha Marine Park make this a relevant case study about MPs pollution in the seabed. Here, a short-term investigation assessed the spatiotemporal distribution, abundance, and composition of MPs on the nearshore seabed. Sediment samples were monthly collected from summer 2018 to winter 2019, in six stations. Despite the differences observed in rainfall between campaigns, no distinct patterns were detected in the accumulation of MPs throughout the sampled months. Yet, strong variations occurred among stations. The abundance of MPs in the Sado estuary (1042.8 ± 430.8 items kg−1) was higher in comparison to all the stations located along the marine park (52.9 ± 31.9 items kg−1). Fragments comprised 70% of particles found in estuarine sediments, while fibers were the predominant type in marine sediments. The majority of MPs collected in the estuary shared the same size class as the best represented grain size fraction: 0.250–0.500 mm. On average, the ratio between the abundance of MPs and the abundance of meiofauna organisms was higher in the estuary, suggesting more encounter rates, by both meiofauna and their predators, with MPs. The distribution of MPs throughout the study area was moderately correlated with sediment sorting and organic matter content. Also, the distinct mineralogical content of each station indicates a reduced sediment transit between stations and consequently a weak exportation of MPs from the estuary. The majority of the polymers identified by Fourier Transform Infrared Spectroscopy was denser than seawater. Polyethylene terephthalate represented 41% of the items analyzed and was mostly assigned to fibers and fiber bundles. Unveiling the distribution patterns of MPs along this segment of the Portuguese west coast enabled to identify a high-risk area where the implementation of preventive measures is urgent.

Zonations and oscillations via heterotrophic processes in tidal unvegetated aquifers

AbstractGlobal‐change drivers that alter tidal amplitude or sea level could directly impact coastal aquifers' seawater–microbe interactions. The semidiurnal or diurnal tide can have consequences for chemical redistribution, because it deepens oxygen and nutrients penetration depth, thereby increasing O2 depletion via microbial respiration in sediments during groundwater circulation. However, chemical and microbial distributions in tidal aquifers remain unclear, in deference to their link with depth and lateral location. By combining the microbes‐accumulated equation with the traditional groundwater flow model in coastal aquifers, we explicitly unravelled the heterotrophic zonation, the salinity zonation, and the oxic zonation of tidal aquifers. According to the model estimates, salt penetrates deeper than reactive chemicals, and the heterotrophic high biomass zone is presumably 2–3 m deep. Such depth of heterotrophic distribution is 2–3 orders of magnitude higher than phototrophic distribution. Additionally, heterotrophic biomass can exhibit faint oscillations, even under the tide forces, whereas dissolved chemicals fluctuate significantly with tidal pumps. Due to the transport of nutrients by tidal penetration, intertidal sediments have a higher respiration rate than subtidal sediments, converting more organic carbon from seawater to atmospheric CO2 via microbes. We demonstrate that heterotrophic biomass may play the dominant role in the chemical reactions of nearshore sediments. Our results confirm the efficacy of unvegetated tidal sediments that rely on ubiquitous heterotrophs as a driver of oxygen consumption and DOC transformation. These steps above will allow for better field investigations of coastal aquifers within a framework of zonations and oscillations.

The estuarine plastics budget: A conceptual model and meta-analysis of microplastic abundance in estuarine systems

Rivers and estuaries are a key transport pathway for microplastics to enter the world's oceans. Despite this, knowledge of the fate of plastic debris in estuaries is limited. Our study assesses the current state of knowledge on the distribution of microplastic debris in estuaries and their intertidal habitats. The literature is reviewed, and an estuarine plastics conceptual model is presented. The conceptual model is populated with data to show the globally averaged standing stocks of microplastic (<5 mm) debris in estuarine waters and sediments. Estuarine plastic debris studies have previously focused on subtidal sediment and surface waters more than intertidal habitats. Estimated mean microplastic abundance is found to be greater (H = 53.136, P = 0.000175) per volume of sediment than per volume of water, although there are large standard deviations within habitats and some caveats regarding variation in methods and limited data in published studies. We found that the most commonly recovered microplastics align with the most commonly used polymers, and that the rates of microplastic transfer between estuarine compartments remain poorly understood. This study informs global plastic transport models by demonstrating the ability of estuaries to trap large quantities of microplastic debris, but substantial differences in the methodologies between estuarine microplastic studies limit the value of global assessments of estuarine microplastics. The main recommendations from this study focus on improving data availability and standardisation to better enable study comparisons and to improve our ability to examine global trends.

Distribution of terrestrial organic material in intertidal and nearshore marine sediment due to debris flow response efforts

We examined the distribution and processing of terrestrial organic material, derived from the disposal of material from a massive debris flow event following a major wildfire in a coastal California (USA) catchment in intertidal and nearshore subtidal marine sediments. Organic matter biomarkers, pyrogenic carbon and lignin phenols, were used to trace the distribution of terrestrial debris material in marine environments. In intertidal sediments located <1 km east of the debris deposition site, pyrogenic carbon values did not significantly change and lambda values, a lignin measure, decreased over time, indicating little lateral transport of the disposed material. In subtidal sediment, pyrogenic carbon and lambda values were greatest in 20 m water depths indicating transport and deposition of this material nearshore. An additional lignin measure indicative of degradation suggested terrestrial organic material degradation in subtidal sediment decreased with distance from shore. Terrestrial biomarkers demonstrated that the disposed material was not detected in the top 20 cm of intertidal sediment but was retained in subtidal sediment offshore of the disposal site. Results suggest coastal management should incorporate consideration of the effects of debris disposal activities on nearshore benthic communities and biogeochemical cycling.

Value of coastal habitats to commercial fisheries in Jersey, English Channel, and the role of marine protected areas

AbstractFisheries are in decline worldwide, and Marine Protected Areas (MPAs) are being advocated as tools that can not only protect and restore biodiversity but also improve fisheries sustainability and protect fisher livelihoods. To understand the role of Marine Protected Areas (MPAs) in underpinning commercial fisheries, this study demonstrates the economic value of Jersey's benthic substrates (habitats) for five predominant species fished by Jersey and French vessels: Homarus gammarus, Cancer pagurus, Maja brachydactyla, Pecten maximus and Buccinum undatum. Value was apportioned between habitats that support these commercial species across their essential life history stages, and the proportional economic value that was protected from bottom‐towed fishing within MPAs was analysed. Multiple habitats across Jersey's territorial waters contributed a total economic value of £14,664,729, with £4,127,999 protected within MPAs. Overall, subtidal sediment was the most valuable habitat to both Jersey (£2.12 million) and French (£2.47 million) fisheries but was also the least protected habitat from bottom‐towed fishing (2.73%). Our findings support an ecosystem‐based approach to fisheries management and emphasise the importance of considering species life histories, and their habitat requirements, in management plans.

Inclusion of condition in natural capital assessments is critical to the implementation of marine nature-based solutions

Current approaches to measure ecosystem services (ES) within natural capital (NC) and nature-based solutions (NbS) assessments are generally coarse, often using a single figure for ecosystem services (e.g., nutrient remediation or blue carbon sequestration) applied to the local or national habitat stock, which fails to take account of local ecosystem conditions and regional variability. As such, there is a need for improved understanding of the link between habitat condition and ES provision, using comparable indicators in order to take more informed management decisions. Here the UK, Solent Marine Sites (SEMS) is used as a case study system to demonstrate how Water Framework Directive (WFD) ‘ecological status’ and other indicators of ecosystem condition (state or quality) can be coupled with habitat extent information to deliver a more precise locally-tailored NC approach for active coastal and marine habitat restoration. Habitat extent and condition data are collected for seven NbS relevant coastal habitats (littoral sediment, mat-forming green macroalgae, subtidal sediment, saltmarsh, seagrass, reedbeds and native oyster beds). The workflow includes: 1) biophysical assessment of regulatory ES; 2) monetary valuation; and 3) compilation of future scenarios of habitat restoration and creation. The results indicate that incorporating classifications by condition indices into local NC extent accounts improved ES benefits by 11–67%. This suggests that omitting condition from NC assessments could lead to undervaluation of ES benefits. Future scenarios of restoration in the SEMS also show that the additional regulatory benefits of reaching ‘Good’ ecological status are £376 million annually, but could be as much as £1.218 billion if ‘High‘status and all habitat creation targets were met. This evidence of the potential value of restoration and importance of including condition indices in assessments is highly relevant to consider when investing in water ecosystems conservation and restoration as called for by the UN Decade on Ecosystem Restoration (2021−2030), and more generally in global nutrient neutrality and blue carbon policy strategies.

Microplastic in Commercial Fish in the Mediterranean Sea, the Red Sea and the Arabian/Persian Gulf. Part 3. The Arabian/Persian Gulf

The manuscript reviews the available literature of 2015-2022 on the microplastic content in commercially important fish species, molluscs and crustaceans in the Arabian/Persian Gulf. The literature on microplastic concentrations on beaches, in subtidal sediment, and in surface water of different regions of the Arabian/Persian Gulf is evaluated, also. Overall, the reported concentration of microplastic in marine organisms in the Gulf has been found to be less than for comparable waters such as the Mediterranean Sea. The highest microplastic concentration within the region of the Gulf has been found on its Northern shore, in Iran, where also most of the microplastic studies within the region stem from.

First long-term assessment of metals and associated ecological risk in subtidal sediments of a human-impacted SW Atlantic estuary

The main objective of this article was to profile the metal accumulation, sources, pollution levels and trends during 6 years in a SW Atlantic coastal system (Bahía Blanca estuary). Subtidal sediment samples were taken from six stations with different human impacts, and chemical element analyses were performed using ICP-OES. As a result, metals tended to increase in time and differences were observed between a site profoundly impacted by sewage waters and the rest of the sampling stations. Values range from background levels to those considered toxic for the marine biota, as in the case of Cd and Cu. Besides, the geochemical analyses exhibited low to moderate pollution with probable adverse biological effects. Finally, the physicochemical parameters of the water column like pH and DO significantly decreased in time in all stations and temperature correlated with some metals, indicating a potential interaction.

Oncholaimus tripapillatus sp. nov., a New Free-Living Marine Nematode of the Genus Oncholaimus Dujardin, 1845 (Nematoda: Enoplida: Oncholaimidae) from the Subtidal Sediment of Dokdo Island, East Sea, Korea, with a New Record of O. qingdaoensis Zhang &amp; Platt, 1983

During a survey of the free-living marine nematodes of Korea, two species belonging to the genus Oncholaimus Dujardin, 1845 were discovered. A new species, Oncholaimus tripapillatus sp. nov. and a newly recorded species, Oncholaimus qingdaoensis Zhang &amp; Platt, 1983, are reported. Oncholaimus tripapillatus sp. nov. was collected from the washing of subtidal coarse sediments around Dokdo Island of the East Sea, Korea. Oncholaimus tripapillatus sp. nov. is characterized by a relatively long (4071–4435 µm in males and 4514–4661 µm in females) and slender body, a slightly constricted head region, relatively long cephalic setae (10–12 µm), males having a precloacal sexual protuberance bearing two small cone-shaped supplementary spines, five pairs of long cloacal setae (three pairs of precloacal and two pairs of postcloacal setae in subventral position), and three remarkable papillae near the end of the tail, with two pairs of subventral setae. The Korean specimens of Oncholaimus qingdaoensis Zhang &amp; Platt, 1983 are almost identical to the Chinese specimens of the original description from the intertidal sand of Qingdao, China. However, the Korean specimens differ from the Chinese specimens in the longer body length in males (3379–3715 µm vs. 2380–2640 µm), the larger spicule length (47–52 µm vs. 34–36 µm), and the presence of ventral tail papillae situated around 14–16 µm from the tail tip. Detailed morphological features and illustrations of two Oncholaimus species from Korea were obtained by differential interference contrast microscopy and scanning electron microscopy. A pictorial key to the species group with distinct tail papillae among the genus Oncholaimus is also provided.

Effects of manganese, iron and sulfur geochemistry on arsenic migration in the estuarine sediment of a small river in Xiamen, Southeast China

The geochemistry of iron (Fe), manganese (Mn) and sulfur (S) and their effects on arsenic (As) mobility in the mudflats of small river estuaries remain unclear. Here, diffusive gradient in thin films (DGT) and high-resolution dialysis (HR-Peeper) techniques combined with a sequential extraction procedure (BCR) were employed to investigate As, Fe, Mn and S geochemistry in the mudflat of the Jiuxi River estuary, Southeast China. Grain size analysis indicated that fine-grained particles were likely to be deposited in the estuarine intertidal zone and coastal area. DGT and HR-Peeper results revealed that in the estuary and coastal area, the dissolved As in sediment in summer was controlled by Mn geochemistry, which includes not only the release of As through Mn/Fe reduction but also the stabilization of dissolved As in pore water. This stabilization of dissolved As may due to the formation of As–Mn-OM complexes. In winter, the significant positive correlations between DGT-Fe, DGT-Mn, DGT-As and DGT-S indicated that sulfate reduction was the start of As mobilization in sediment in winter. In both the estuary and the coastal area, the easily reducible Fe, Mn and As contents in intertidal sediment were higher than those in the subtidal zone. Combined with the As flux across the sediment-overlying water interface (SWI), these phenomena suggested that As in subtidal sediment diffused into overlying water and that As in overlying water tended to accumulate in the intertidal sediment. The total organic carbon content (TOC) and DGT results in the lower reach, estuary and coastal areas indicated that organic matter is the controlling factor of Fe/Mn reduction, sulfate reduction and As mobilization. The BCR test results showed higher reactive fraction contents of Fe, Mn and As in winter sediment, which threaten the overlying water quality.

The timing of the postglacial marine transgression in the Ría de Ferrol (NW Iberia): A new multiproxy approach from its sedimentary infill

The Ría de Ferrol is a confined tide-dominated incised valley in the mesotidal passive Atlantic margin of NW Iberia. A new multidisciplinary approach enables a high-resolution reconstruction of the main environmental changes affecting this area during the Lateglacial and the Holocene. We defined the main seismic and sedimentary facies in the infill and selected different key points to be cored. A number of multiproxy analyses were performed on four sections of sediment (sedimentology, X-ray fluorescence, radiocarbon dating and palynological analyses). Physiography exerted a strong control on the evolution of the basin, as a rock-bounded narrow channel in the middle of the basin influenced the flooding of the ria during the postglacial marine transgression. Depositional environments shifted towards the east as the sea level rose and fluvial facies at the base were covered by facies from a tide-dominated estuary, which were predominant during most of the Holocene. Several layers of sediments from stagnant freshwater areas dominated by Juncus sp. were recovered at ca. −20.5 to −21, ca. −13.1 to −13.5, −12.5 to −12.8 and −12.1 to −13.5 m NMMA along the central axis of the embayment, and dated to be older than 10190–10290; 10790–10970; 7510–8220 and 7130–7830 cal yr BP. They may respectively represent a local stage of lowering sea-level dated at the end of the Lateglacial (i.e. the Younger Dryas), and different episodes of deceleration/stabilization of sea-level rise occurred during the early Holocene (i.e. the 11.4, 10.5, 9.3, 8.2 kyr Henrich events). Thus, for the first time in this region, we were able to generate a high-resolution spatial–temporal interpretation of environmental changes linked to the relative sea-level variations using subtidal sediments from the same sub-basin (and thus free of substantial/differential post-depositional deformations) that describes in detail the flooding of the ancient coastal plains of this region at the beginning of the Holocene.

New records of Pseudotachidiidae from South Korea, including a key to species of the Pseudomesochrinae (Copepoda: Harpacticoida).

Two species of the marine harpacticoid family Pseudotachidiidae (Copepoda) are reported from subtidal sediments in the Southern Sea of Korea. Psammis wellsi sp. nov. (Danielsseniinae) is most closely related to P. longisetosa Sars, 1910 but differs from its European congener in the ventral ornamentation of the female genital double-somite, the dorsal ornamentation of the second abdominal somite in the male, the armature of the proximal endite of the maxillary syncoxa, the relative setal lengths and general shape of the female P5, and the relative length of the inner seta of the male P5 endopodal lobe and P6. The female of Pseudomesochra tatianae Drzycimski, 1968 is redescribed in detail, constituting the only other record of the species since its discovery at the type locality in western Norway. East Asian records of members of the four subfamilies currently recognized in the Pseudotachidiidae are summarized. Published and other records of the 23 described species in the Pseudomesochrinae are collated and their armature patterns of P1P5 are tabulated and corrected where necessary. Pseudomesochra affinis (Sars, 1920) is removed from its synonymy with P. longifurcata T. Scott, 1902 and formally reinstated as a valid species. An updated female-based key to the 19 valid species of Pseudomesochra T. Scott, 1902 and four species of Keraia Willen Dittmar, 2009 is presented.

Impacts of infaunal activity and physical disturbance on acoustic properties of muddy coastal sediments

Storm disturbance of shallow coastal sediments can resuspend subtidal sediment and transport and deposit sand from beach erosion, creating sorted layers of differing grain sizes. These sediments provide habitat for diverse and abundant infaunal organisms that mix these layers (bioturbation), but how the reestablishment of disturbance-tolerant infauna affects recently disturbed sediment structure, including acoustic properties, is poorly understood. In this laboratory study, we compared the effects of physical disturbance (resuspension of surface muddy sediment and addition of sand, simulating a storm), infaunal activities (burrowing by brittle stars), and the combination of both on acoustic properties of sediments. We hypothesized that acoustic properties would reflect faster reconsolidation and more mixing of the initial mud layer with the deposited sand in sediment with infauna compared to defaunated sediment. At several timepoints following disturbance (1–14 days), we measured sound speed and attenuation at 400 kHz at multiple depths within and below the resuspended layer. After 14 days, we measured porosity, grain size, and bioturbation with tracer particles to relate to acoustic properties. Infaunal effects on post-storm sediment structure may be important to consider for acoustic mapping of reconsolidating sediment in shallow coastal areas.

Benthic Nutrient Fluxes across Subtidal and Intertidal Habitats in Breton Sound in Response to River-Pulses of a Diversion in Mississippi River Delta

We measured benthic fluxes of dissolved nutrients in subtidal sediments and intertidal soils associated with river-pulse events from Mississippi River via the operation of a river diversion structure at Caernarvon, LA. Experiments measuring benthic fluxes in subtidal habitats were conducted during the early spring flood pulse (February and March) each year from 2002 to 2004, compared to benthic fluxes of intertidal habitats measured in February and March 2004. Nitrate (NO3−) uptake rates for subtidal sediments and intertidal soils depended on overlying water NO3− concentrations at near-, mid-, and far-field locations during river-pulse experiments when water temperatures were &gt;13 °C (NO3− removal was limited below this temperature threshold). NO3− loading to upper Breton Sound was estimated for nine river-pulse events (January, February, and March in 2002, 2003, and 2004) and compared to NO3− removal estimated by the subtidal and intertidal habitats based on connectivity, area, and flux rates as a function of NO3− concentration and water temperature. Most NO3− removal was accomplished by intertidal habitats compared to subtidal habitats with the total NO3− reduction ranging from 8% to 31%, depending on water temperature and diversion discharge rates. River diversion operations have important ecosystem design considerations to reduce the negative effects of eutrophication in downstream coastal waters.

Distribution and abundance of microplastics in coastal sediments depends on grain size and distance from sources

Microplastic deposition in marine sediments is a geographically widespread problem. This study examines microplastics in intertidal and subtidal sediments at 87 locations in habitats designated as Special Areas of Conservation (SACs) and Special Protection Areas (SPAs) on the coastline of Ireland. Established methodological approaches including, organic matter digestion, density separation, particle extraction and polymer identification were applied. Microplastic abundance was closely related with distance from known sources and concentrations were greater in intertidal as opposed to subtidal sediments. Colourless, polyethylene fibres and polypropylene fragments were the most abundant MP recorded and finer grained sediments were shown to entrap more MPs than coarser sediments. The results demonstrate that an understanding of potential sources of pollution, sediment type and hydrodynamic conditions are very important in terms of MP abundance and distribution in marine sediments and also in terms of effective waste management strategies and policy aimed at reducing the global plastics problem.

Structure and function of Shark Bay microbial communities following tropical cyclone Olwyn: A metatranscriptomic and organic geochemical perspective.

Shark Bay, Western Australia, is episodically impacted by tropical cyclones. During 2015, the region was hit by a category 3 cyclone, "severe tropical cyclone Olywn," leading to the formation of a black sludge in an intertidal zone harboring microbial mats and microbialites. Upon returning to the impacted site 12months later, the black sludge deposit was still recognizable between the microbialite columns and mucilaginous cobbles near the shoreline in the impacted area. Metatranscriptomic and organic geochemical analyses were carried out on the cyclone-derived materials and impacted microbial mat communities to unravel the structure, function, and potential preservation of these deposits following a tropical cyclone. It was found that samples derived from the black sludge contained low relative abundances of cyanobacteria but had higher proportions of heterotrophic and anaerobic microorganisms (e.g., methanogens and sulfate-reducing bacteria). Increased metabolic activity by these microorganisms (e.g., sulfate reduction and organic matter degradation) is thought to drive calcium carbonate precipitation and helps in mat preservation. Comparison of the aliphatic biomarker by gas chromatography-mass spectrometry (GC-MS) analyses showed that C25 highly branched isoprenoid (HBI) alkenes were significantly higher in the cyclone-derived materials attributed to the relocation of subtidal sediments containing HBI-producing diatom communities by the tropical cyclone. Raney nickel desulfurization of the polar fraction extracted from a mucilaginous cobble revealed sulfur-bound hopanoids and a series of benzohopanes. The presence of these compounds could be indicative of microbial matter that has been influenced by the tropical cyclone which may have caused elevated levels of water column anoxia promoting increased sulfurization of the organic matter to occur.

Kinetic characteristics of mobile Mo associated with Mn, Fe and S redox geochemistry in estuarine sediments

Estuarine sediments are crucial repositories and incubators of molybdenum (Mo) during its transport from rivers to the ocean. Here, Mo mobility and related processes in estuarine sediments were explored using high-resolution dialysis (HR-Peeper) and diffusive gradients in thin films (DGT) techniques. Better correlations were observed between dissolved Mn and Mo than between dissolved Fe and Mo, implying that Mn geochemistry plays a key role in dissolved Mo mobility via molybdate adsorption onto abundant Mn oxides and its substantial release upon intense Mn reduction. As a result, oxic intertidal sediments functioned as Mo sinks, and anoxic subtidal sediments functioned as Mo sources. The opposite vertical distributions between DGT-Labile S and DGT-Labile Mo indicated that the availability of labile Mo can be blocked by aqueous sulfide. However, the corresponding high concentrations of DGT-Labile S and dissolved Mo at subtidal sites demonstrated that the abundant dissolved Mo remobilized via Mn reduction was not effectively solidified by sulfide. Simulation with the DIFS model further verified that redox conditions and induced physicochemical processes are crucial factors controlling Mo mobility, with relatively low dissolved Mo concentrations but an adequate and steady resupply capacity of the bioavailable molybdate in intertidal sediments.

Metabolic flexibility allows bacterial habitat generalists to become dominant in a frequently disturbed ecosystem

Ecological theory suggests that habitat disturbance differentially influences distributions of habitat generalist and specialist species. While well-established for macroorganisms, this theory has rarely been explored for microorganisms. Here we tested these principles in permeable (sandy) sediments, ecosystems with much spatiotemporal variation in resource availability and physicochemical conditions. Microbial community composition and function were profiled in intertidal and subtidal sediments using 16S rRNA gene amplicon sequencing and metagenomics, yielding 135 metagenome-assembled genomes. Community composition and metabolic traits modestly varied with sediment depth and sampling date. Several taxa were highly abundant and prevalent in all samples, including within the orders Woeseiales and Flavobacteriales, and classified as habitat generalists; genome reconstructions indicate these taxa are highly metabolically flexible facultative anaerobes and adapt to resource variability by using different electron donors and acceptors. In contrast, obligately anaerobic taxa such as sulfate reducers and candidate lineage MBNT15 were less abundant overall and only thrived in more stable deeper sediments. We substantiated these findings by measuring three metabolic processes in these sediments; whereas the habitat generalist-associated processes of sulfide oxidation and fermentation occurred rapidly at all depths, the specialist-associated process of sulfate reduction was restricted to deeper sediments. A manipulative experiment also confirmed habitat generalists outcompete specialist taxa during simulated habitat disturbance. Together, these findings show metabolically flexible habitat generalists become dominant in highly dynamic environments, whereas metabolically constrained specialists are restricted to narrower niches. Thus, an ecological theory describing distribution patterns for macroorganisms likely extends to microorganisms. Such findings have broad ecological and biogeochemical ramifications.