Abstract Chromosomal translocations t(4;11)(q21;q23) are associated with agroup of acute lymphoblastic leukemias with very poor prognosis. Fromthe complete sequences of the breakpoint cluster regions of the humanMLL and AF-4translocation partner genes, a novel set of 66 oligonucleo-tides that facilitates the rapid identification of translocation breakpointsby PCR analysis of genomic DNA was designed. For each breakpoint, apair of optimally suited primers can be assigned, which improves themonitoring of the disease during treatment. Comparison of the break-points with the corresponding parental sequences also contributes to ourbetter understanding of the illegitimate recombination events leading tothese translocations. IntroductionCertain chromosomal translocations are known to be the initialsteps of the malignant transformation of hematopoietic cells leading tothe development of myeloid and lymphoblastic leukemias and lym-phomas (1). Translocations to the MLL 3 gene (2, 3) are associatedwith an AML or ALL disease phenotype. More than 30 differentchromosomal translocations to the 11q23 region have so far beenidentified, all of which are associated with hematological malignan-cies, and many translocation partner loci have been analyzed at themolecular level (for review see Refs. 4–6). Among these transloca-tions, the chromosomal translocation t(4;11) is regularly associatedwith high-risk infant acute pro-B lymphoblastic leukemias and hasbeen proposed to initiate the development of this malignancy (4–8).Leukemic blasts with chromosomal translocation t(4;11) are highlyresistant against current treatment protocols. Although an initial re-mission can be achieved in about 80–90% of all cases, the relapse rateis exceedingly high. Thus, there is need for a better control of appliedtherapy. Monitoring of MRD allows the control of the efficacy ofinduction chemotherapy or subsequent allogeneic stem cell transplan-tation. Molecular methods for MRD-monitoring of t(4;11)-patients, sofar, were based mostly on RT-PCR analysis of breakpoint mRNAs(9). However, RT-PCR experiments using one t(4;11) break-regiontranscript as the sole molecular marker may generate ambiguousresults, as it has been demonstrated recently (10). Derivative (der) 11breakregion transcripts were identified in normal biopsy materialwithout any accompanying cytogenetic evidence for a chromosomalrearrangement t(4;11). In addition, the RNA may be degraded andsteady-state RNA concentration or transcriptional activity may changeduring therapy, which may negatively affect a precise analysis.The use of genomic DNA as template for PCR experiments is veryattractive because chromosomal fusion sites are characteristic andusually stable features of t(4;11) cells (11). However, this type ofanalysis, so far, was hampered by the fact that the DNA sequence ofthe breakpoint cluster region of the human AF-4gene was not avail-able, and systematic analyses of t(4;11) breakpoints on the genomicDNA level could not be performed. In this study, the completebreakpoint cluster region of the AF-4gene was subcloned and se-quenced. The sequence was used to design sets of specific oligonu-cleotides, allowing investigators to retrieve chromosomal breakpointinformation from t(4;11) patient DNA. This resulted in the assignmentof optimally suited DNA primer pairs for each individual patient. Thisnew tool can be applied in any clinical setting and may close adiagnostic gap for this group of high-risk acute leukemias.Materials and Methods
Read full abstract