Seismograms of the June 9, 1994, Bolivian deep earthquake recorded at epicentral distances from 100° to 122° show a train of signals with predominant frequencies between 1 and 2 Hz after the arrivals of short-period diffracted P-waves (P diff). We investigate the origin of these signals following P diff by analyzing a total of 20 records from the IRIS broad-band network and the short-period network of New Zealand. The arrivals of late signals continue for over 100 s, that is two times longer than the estimated source duration of this event. Subsequent aftershocks, which cause the following signals, are not expected from the long-period records. These results indicate that the long continuation of short-period signals is not due to the source complexities. The signals following P diff have small incident angles, and their spectra show peaks at about the same frequencies. These characteristics of the following signals exclude the possibility that their origin is shallow structure such as the heterogeneities beneath the stations or upper mantle. P diff propagates a long distance within the heterogeneous region near the core-mantle boundary. We conclude that the short-period signals following the main P diff are scattered waves caused by small-scale heterogeneities near the core-mantle boundary.