Subalpine Habitats Research Articles

Standing on the shoulders of giants: molecular data confirm Kükenthal’s systematic placement of the Australian endemic Carex archeri (Cyperaceae)

Archer’s sedge (Carex archeri Boott) is a small, rare (or possibly overlooked by collectors due to the diminutive size) species restricted to alpine and subalpine habitats in south-eastern mainland Australia and Tasmania. The systematic placement has been obscure with the species having been historically associated with sections in four of the six recognised Carex subgenera. We investigated the placement of C. archeri by addition to the available Carex molecular phylogenetic framework. Our results support C. archeri belonging to sect. Junciformes (in subg. Psyllophorae), making this the only representative of the subgenus in Australia. This placement was first proposed by Kükenthal (1909) who regarded C. archeri as a synonym of the New Zealand endemic C. acicularis Boott but our phylogenetic analyses support C. archeri as a separate taxon. Our approach highlights the utility of molecular barcoding for elucidating systematic relationships of poorly known taxa. Biogeographic reconstruction suggests Late Miocene dispersal from South America to the south-western Pacific but does not clarify whether New Zealand or Australia was colonised first. We evaluate the conservation status of Carex archeri using IUCN criteria as Endangered at the global level. At the state level, we propose Critically Endangered status in New South Wales, Endangered in Victoria and Data Deficient in Tasmania.

Vegetative traits, floral biology, and mutualistic interactions in the tropical mountain shrub Ribes ciliatum (Grossulariaceae)

Plant species in tropical mountain ecosystems experience significant environmental variation across short spatial distances. These systems offer an opportunity to assess geographic variation in plant traits in relation to biotic and abiotic environments. We examined plant vegetative and reproductive traits in the shrub R. ciliatum across two native conifer forests in central Mexico. We measured plant height, number of branches, leaf size, flower production, floral morphology, floral longevity, and plant reproductive success in R. ciliatum populations found in fir forests (3100 m) and Hartweg's pine forests (subalpine habitat, 3700 m). We also quantified the level of pollinator dependence, pollinator visitation rates, and fruit consumption rates by frugivorous birds in both populations. Plants were shorter and had smaller leaves in the subalpine forest than in the fir forest. Floral longevity decreased in the subalpine forest, but flower production, flower size, and fruit weight remained similar across populations. Fruit set and pollinator visitation rates were higher in the subalpine forest; however, seed weight and fruit consumption rates did not differ between sites. Hummingbirds and bumblebees were the primary pollinators of R. ciliatum, and the bird Ptiliogonys cinereus was the most important fruit consumer at both sites. Fruit set was entirely dependent on pollinators. Reduced plant size in the subalpine forest coincides with a general pattern associated with high mountain environments. In contrast, reproductive characters had a closer relationship to the pollination environment. The absence of variation in flower size and shape was consistent with the similarity in the composition of the pollinator community. Meanwhile, compared to lower-elevation forests, the subalpine forest exhibited shorter-lived flowers and increased fruit set, associated with higher pollinator visitation rates. Ribes ciliatum is a key resource for pollinators and frugivores at a time of year when few other floral resources are available in these high-elevation mountain forests.

Intraspecific genetic divergence of the subalpine shrubby variety Quercus crispula var. horikawae from the mountain tree variety Q. crispula var. crispula in Japan

AbstractEcotypic divergence in tree taxa often occurs in subalpine habitats, where environmental conditions are more stressful than those in lower elevations. In the white oak species in Japan Quercus crispula, the subalpine shrubby variety Q. crispula var. horikawae (Qch) has been recognized in central and northern Honshu. Although Qch has different phenotypes from Q. crispula var. crispula (Qcc), genetic divergence between Qcc and Qch has not been examined yet. Pairs of Qcc and Qch populations in eight locations and additional Qcc and Qch populations around these locations were investigated. Leaf size of Qch was smaller than that of Qcc. Chloroplast DNA haplotypes were shared between the Qcc and Qch populations. In genotypes at 29 nuclear microsatellite loci, genetic diversity did not differ between the Qcc and Qch populations. Principal component analysis and a neighbor‐joining tree of populations based on the genotypes demonstrated that 13 Qcc populations and eight Qch populations were grouped separately, except for three Qch populations that were grouped to Qcc. Climatic conditions in the eight Qch populations were characterized by lower temperature and heavier snowfall than those in the 16 populations of the genetic group of Qcc. These results suggest genetic divergence between Qcc and Qch associated with subalpine climatic conditions, irrespective of leaf size. The origin of the subalpine Qch lineage and the history of ecotypic divergence should be investigated in future genomic studies.

Long‐term declines in insect abundance and biomass in a subalpine habitat

AbstractRecent reports of insect declines have caused concern among scientists and the public. Declines in insect abundance and biomass are ubiquitous across many climatic zones and have been largely attributed to anthropogenic land use intensification and climate change. However, there are few examples of long‐term continuous data in relatively undisturbed environments, as opposed to agricultural landscapes. We sampled insects weekly from 1986 to 2020 in a protected subalpine meadow in Colorado, which is embedded in an undisturbed natural landscape. During the study period, summers became warmer, while winters became drier. Insect biomass declined by ∼47% and abundance declined by ∼61.5% over the last 35 years. Insect declines occurred in concert with changes in climate, as some climate factors were correlated with insect abundance and biomass. Specifically, insect abundance was lower during years with less summer precipitation and winter snowfall, and to a lesser degree with warmer temperatures. In subalpine systems, changes in precipitation and warmer temperatures are expected to continue under climate change; thus, continued insect declines might be expected even in relatively undisturbed habitats.

Overlap in habitat use and activity patterns between sika deer (Cervus nippon) and Japanese serows (Capricornis crispus) in subalpine habitats: exploitative competition rather than direct interference?

Examining multiple niche relationships, such as habitat use and activity patterns, between sympatric species contributes to an understanding of the mechanisms of coexistence and competition. Sika deer ( Cervus nippon Temminck, 1838) and Japanese serows ( Capricornis crispus (Temminck, 1836)) often show different habitat use, and diversity in vegetation and topography seems to facilitate their coexistence. Conversely, their habitat use may overlap in areas with low-diversity habitats; however, this remains unstudied. Moreover, whether they spatiotemporally avoid each other to reduce direct interference is unclear. We examined the fine-scale patterns of habitat use and activity of deer and serows in the subalpine forests of Mount Fuji, which have low-diversity habitats, using camera trapping data over 3 years. Deer and serow habitat niches largely overlapped, especially in summer (92%–94%) and autumn (89%–91%), suggesting that low-diversity habitats facilitate overlapping habitat use. Both species selected areas frequently used by the other during spring to autumn and their temporal niches largely overlapped, especially in summer (88%) and autumn (83%), suggesting that they do not spatiotemporally avoid each other (i.e., there is no direct interference). Rapid range expansion of deer into these subalpine habitats may exclude native serows through resource exploitative competition rather than interference competition.

A streamlined approach to characterize microalgae strains for biomass productivity under dynamic climate simulation conditions

Screening microalgae strains under static light and temperature flask conditions cannot directly quantify the biomass productivities of algae growing in the dynamically fluctuating light and temperature conditions of outdoor ponds. In this effort, we describe a testing pipeline that screens for productivity under climate simulated conditions. A validated, miniaturized Laboratory Environmental Algae Pond Simulator (mini-LEAPS) photobioreactor was used to determine optimal medium salinities and biomass productivities of cold-tolerant microalgae collected from Arctic, subarctic, Antarctic, and subalpine habitats. Strains characterized in this effort include: Chlorella antarctica UTEX1959, Chlorella sp. UTEXSNO69, Chloromonas rosae UTEXSNO11, Phaeodactylum tricornutum UTEX646, and Stichococcus minutus CCALA727. Observed productivities of the characterized strains ranged from 1.74 ± 0.25 to 8.18 ± 0.81 g m−2 day−1 (as ash-free dry weight). For each strain, a temperature tolerance profile was generated to identify the most appropriate season (s) for cultivation. The two most promising strains, Chlorella sp. UTEX SNO69 and P. tricornutum UTEX646, were tested alongside the DISCOVR winter benchmark strain Monoraphidium minutum 26B-AM in outdoor open ponds at the PNNL Algae Testbed (PAT) in Arizona. Under cold-season outdoor pond conditions, Chlorella sp. UTEXSNO69 achieved average areal biomass productivities of 8.21 ± 0.50 g m−2 day−1, not significantly different from that of the benchmark strain (8.52 ± 0.43 g m−2 day−1, p > 0.05). Under spring outdoor pond conditions, P. tricornutum UTEX646 achieved average areal biomass productivities 10.34 ± 0.27 g m−2 day−1, not significantly different from that of the benchmark (10.07 ± 0.50 g m−2 day−1) under the tested conditions (p > 0.05). The streamlined pipeline was thus demonstrated to successfully characterize productive microalgae strains for outdoor deployment by weeding out algae strains that were not productive under the tested dynamic light and temperature conditions.

Floral and genetic divergence across environmental gradients is moderated by inter-population gene flow in Platanthera dilatata (Orchidaceae)

Understanding how natural selection acts on intraspecific variation to bring about phenotypic divergence is critical to understanding processes of evolutionary diversification. The orchid family is well known for pollinator-mediated selection of floral phenotypes operating among species and along environmental or geographic gradients. Its effectiveness at small spatial scales is less understood, making the geographic scale at which intraspecific floral variation is examined important to evaluating causes of phenotypic divergence. In this study, we quantified phenotypic variation in the orchid Platanthera dilatata across 26 populations in coastal Southeast Alaska and compared this to edaphic and genetic variation at microsatellite loci. We sought to determine (1) if flower morphological variation is structured at smaller geographic scales, (2) the extent of genetic divergence in relation to phenotypic divergence, (3) the scale at which inter-population gene flow occurs, and (4) the relative importance of geographic distance and abiotic factors on population genetic structure. Two morphological groups were found to separate based on lip and spur length and are restricted to different habitats. Small-flowered forms occur in muskeg bogs, whereas large-flowered forms occur in fens and meadows, and rarely in sub-alpine habitat. Genetic analyses were concordant with the morphological clusters, except for four small-flowered populations that were genetically indistinguishable from large-flowered populations and considered to be introgressed. In fact, most populations exhibited some admixture, indicating incomplete reproductive isolation between the flower forms. Pollinators may partition phenotypes but also facilitate gene flow because short-tongued Noctuidae moths pollinate both phenotypes, but longer-tongued hawkmoths were only observed pollinating the large-flowered phenotype, which may strengthen phenotypic divergence. Nevertheless, pollinator movement between habitats could have lasting effects on neutral genetic variation. At this small spatial scale, population genetic structure is only associated with environmental distance, likely due to extensive seed and pollinator movement. While this study corroborates previous findings of cryptic genetic lineages and phenotypic divergence in P. dilatata, the small scale of examination provided greater understanding of the factors that may underlie divergence.

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Senecio ×riloensis (Asteraceae), a new natural hybrid between S. hercynicus and S. transylvanicus from Bulgaria

The newly described Senecio ×riloensis combines the morphological features of S. hercynicus and S. transylvanicus, and grows in subalpine habitats in the Rila Mountains, Bulgaria. It is illustrated with photos of living plants in the locus classicus.

Fruticose Lichen Communities at the Edge: Distribution and Diversity in a Desert Sky Island on the Colorado Plateau

Subalpine habitats in sky islands in the Southwestern USA are currently facing large-scale transformations. Lichens have widely been used as bioindicators of environmental change. On the Colorado Plateau, fruticose lichens occur in patchy, disconnected populations, including unique lichen-draped conifer sites in subalpine forests in the La Sal Mountains in southeastern Utah. Here, we document the distribution and fungal diversity within these lichen communities. We find that lichen-draped conifer sites in the La Sal Mountains are restricted to only three known, small areas in Picea englemannii forests above 3000 m above sea level, two of which have recently been impacted by wildfire. We document 30 different species of lichen-forming fungi in these communities, several which represent the first reports from the Colorado Plateau. We also characterize mycobiont haplotype diversity for the fruticose lichens Evernia divaricata, Ramalina sinensis, and multiple Usnea species. We also report a range of diverse fungi associated with these lichens, including genetic clusters representing 22 orders spanning seven classes of Ascomycetes and fewer clusters representing Basidiomycetes. Our results provide a baseline for ongoing monitoring and help to raise awareness of unique lichen communities and other biodiversity in the region.

Seasonal Eco-Physiology Characteristics of Four Evergreen Rhododendron Species to the Subalpine Habitats

Four evergreen broadleaf Rhododendron spp. (Rhododendrons), namely, Rhododendron aganniphum, R. nyingchiense, R. wardii, and R. triflorum, occur in harsh subalpine habitats in the southwest Qinghai-Tibet Plateau (QTP), China. Considering that the four Rhododendrons cannot escape their unique environment, they must evolve a set of adaptations to survive, but the information is lacking. To uncover their physiological adaptation characteristics, in the present study, we monitored their physiological characteristics by determination of their seasonal variation in antioxidant enzyme activity, osmotic adjustment substrates, and carbohydrate contents, and their pigment content and photosynthetic efficiency. The results showed that superoxide dismutase (SOD), peroxidase (POD), catalase (CAT) activities and proline content of four Rhododendrons had a significant difference in autumn and were insignificant in summer. Specifically, R. aganniphum had the maximum protective enzyme activity and proline content in winter as well as chl a, b, and car contents. The values of maximal quantum yield (Fv/Fm), photochemical efficiency (ΦPSII), and non-photochemical quenching (NPQ) of four Rhododendrons were significantly higher in summer than in other seasons. The lower qP indicated the four Rhododendrons were susceptible to photoinhibition. Overall, the four Rhododendrons had similar physical characteristics in subalpine habitats. The parameters of the maximum quantum yield of photosystem II (PSII), the actual quantum yield of PSII, the non-photochemical chlorophyll fluorescence quenching, and chlorophyll a content increased in summer. Meanwhile, the protective enzyme activity and total soluble sugar content, proline content, and carotenoid content increased in spring, autumn, and winter. These results suggested that the four Rhododendrons can adapt to subalpine habitats by heat dissipation to avoid the damage of excessive radiation during the warm season while scavenging reactive oxygen and increasing the intracellular fluid concentration to avoid damage caused by chilling temperatures during the cold seasons. These findings would provide a reference for the conservation and application of these valuable ornamental evergreen broadleaf Rhododendrons, and enrich theory of plant eco-physiology in the high altitudes of the QTP.

Using stable isotopes to investigate differences of plant water sources in subalpine habitats

AbstractLocated along the northeastern edge of the Qinghai‐Tibet Plateau in China, the Qilian Mountains are an important ecological barrier in Northwest China. Therefore, it is of great significance to study the plant water sources in subalpine habitats for understanding the ecological and hydrological processes in the Qilian Mountains. Here, based on the samples of precipitation, xylem water, soil water, river water, and spring water collected during May–October 2019 from subalpine habitats on the northern slope of the Qilian Mountains and the measured hydrogen and oxygen stable isotope values (δ2H and δ18O, respectively), the present study gained further insight into plant water sources in this region using the IsoSource model. Water absorption characteristics of shrubs were similar in subalpine habitats. Specifically, plants absorbed water primarily from the topsoil layer (0–30 cm) and rarely from the deep soil layers. Nevertheless, in the dry and growing seasons with high water demand, subalpine shrubs competed for water resources at similar depths. As a result of this competition, the utilization rate of deep soil water improved in some shrubs, expanding the differences in water sources of subalpine shrubs within the same habitat. In addition, in the dry and growing seasons, the water sources of the same subalpine shrub varied across different habitats. Compared with other subalpine shrubs, Salix cupularis Rehder, Salix oritrepha Schneid., Potentilla fruticosa L., Salix sclerophylla Anderss., Rhododendron anthopogonoides Maxim., and Rhododendron przewalskii Maxim. could alter their water use strategies with variations in water conditions, exhibiting a greater drought tolerance. These findings provide valuable information for understanding the subalpine region's eco‐hydrological processes and contribute to the selection of suitable species for the restoration of the subalpine ecological environment under the background of global change.

Biogeography, timing, and life‐history traits in the PPAM clade: Coleanthinae (syn. Puccinelliinae), Poinae, Alopecurinae superclade, Miliinae, and Avenulinae and Phleinae (Poaceae, Pooideae, Poeae)

AbstractWe conducted a biogeographic analysis of the PPAM clade of Poeae Plastid DNA Group 2, which includes 12 subtribes of C3 grasses. One hundred and eighty‐four species sampled represent 42 of 43 accepted genera and taxonomic diversity in large genera. We analyzed plastid sequences of matK, trnC‐rpoB, and trnT‐trnL‐trnF using BEAST to produce a dated tree and MrBayes to produce a Bayesian tree, on which we ran Bayesian‐Binary‐Markov‐Chain analyses on a worldwide biogeographic data set of 12 areas. PPAM split in southwestern Asia into subtribe Coleanthinae and PAM clades in the Early Miocene. PAM diversified rapidly in the Middle Miocene in southwestern Asia into four monogeneric lineages, Avenulinae, Phleinae, Miliinae, Poinae, and the Alopecurinae superclade (seven subtribes with 27 genera). In the Late Miocene, Pliocene, and mostly Pleistocene, the latter four lineages diversified and dispersed across Eurasia and established in North America. Dispersals to the southern hemisphere occurred in the Pliocene and Pleistocene. Annuals occur in 15 Mediterranean and southwestern Asia genera, but in few genera in other regions. Beyond phylogenetically isolated annual species dating to the Miocene, all other annuals evolved in the Pliocene and Pleistocene. Cold tolerance is high among perennial species, many occurring in the alpine, nine genera ranging into the Arctic. We suggest that alpine and subalpine habitats were ancestral. High tolerance of saline and alkaline conditions arose between the Pliocene and Pleistocene in Coleanthinae, Alopecurinae, Poinae, Hookerochloinae, Beckmanniinae, and Arctopoa. Combinations are proposed for Cornucopiae alopecuroides in Alopecurus and for Paracolpodium colchicum in Hyalopodium. A nothogenus × Catanellia is proposed for Catabrosa × Puccinellia.

Resident bird species track inter-annual variation in spring phenology better than long-distance migrants in a subalpine habitat

The ability to track variation in climate is important for species to persist in a given environment. Lack of responses to both long-term changes and inter-annual variation in climate parameters can result in reduced fitness and population decline. Furthermore, migration strategy can influence the ability to track climatic variation due to the potential to use reliable environmental cues. Here, we studied the temporal relationship between birch leafing and onset of breeding for three bird species with contrasting migration strategies over a 20-year period in a subalpine habitat in Central Norway. We found no temporal change in birch leafing date or breeding onset for the three bird species over the study period. However, we found a statistically significant difference in the ability to track inter-annual variation in birch leafing date between the resident and two long-distance migratory species. The resident great tit Parus major was more capable of initiating egg laying in closer association to variation in birch leafing in early springs, than the long-distance migratory European pied flycatcher Ficedula hypoleuca and common redstart Phoenicurus phoenicurus. Long-distance migrants seem to have been constrained by arrival date or time from arrival to entering the breeding areas, in contrast to resident birds, which might be better able track early initiation of spring in breeding areas by adjusting egg laying date. Our findings highlight the importance of not solely studying directional long-term climatic change, but also pay attention to inter-annual variation.

Evolutionary footprints of a cold relic in a rapidly warming world.

With accelerating global warming, understanding the evolutionary dynamics of plant adaptation to environmental change is increasingly urgent. Here, we reveal the enigmatic history of the genus Cochlearia (Brassicaceae), a Pleistocene relic that originated from a drought-adapted Mediterranean sister genus during the Miocene. Cochlearia rapidly diversified and adapted to circum-Arctic regions and other cold-characterized habitat types during the Pleistocene. This sudden change in ecological preferences was accompanied by a highly complex, reticulate polyploid evolution, which was apparently triggered by the impact of repeated Pleistocene glaciation cycles. Our results illustrate that two early diversified Arctic-alpine diploid gene pools contributed differently to the evolution of this young polyploid genus now captured in a cold-adapted niche. Metabolomics revealed central carbon metabolism responses to cold in diverse species and ecotypes, likely due to continuous connections to cold habitats that may have facilitated widespread adaptation to alpine and subalpine habitats, and which we speculate were coopted from existing drought adaptations. Given the growing scientific interest in the adaptive evolution of temperature-related traits, our results provide much-needed taxonomic and phylogenomic resolution of a model system as well as first insights into the origins of its adaptation to cold.

Evaluating the importance of wolverine habitat predictors using a machine learning method

Abstract In the conterminous United States, wolverines (Gulo gulo) occupy semi-isolated patches of subalpine habitats at naturally low densities. Determining how to model wolverine habitat, particularly across multiple scales, can contribute greatly to wolverine conservation efforts. We used the machine-learning algorithm random forest to determine how a novel analysis approach compared to the existing literature for future wolverine conservation efforts. We also determined how well a small suite of variables explained wolverine habitat use patterns at the second- and third-order selection scale by sex. We found that the importance of habitat covariates differed slightly by sex and selection scales. Snow water equivalent, distance to high-elevation talus, and latitude-adjusted elevation were the driving selective forces for wolverines across the Greater Yellowstone Ecosystem at both selection orders but performed better at the second order. Overall, our results indicate that wolverine habitat selection is, in large part, broadly explained by high-elevation structural features, and this confirms existing data. Our results suggest that for third-order analyses, additional fine-scale habitat data are necessary.

Systematic analysis of Russula in the North American Rocky Mountain alpine zone

ABSTRACT Russula (Russulales) is an important ectomycorrhizal fungal genus in Arctic and alpine regions where it occurs with Salix, Betula, Dryas, and Polygonum, yet a complex phylogenetic analysis of the genus in these habitats is lacking. This research compared collections of Russula from the Rocky Mountain alpine (Colorado, Montana, Wyoming) with reference specimens from Arctic and alpine habitats, mostly in Europe, using an in-depth morphological study and a phylogenetic analysis of the nuc rDNA internal transcribed spacer region ITS1-5.8S-ITS2 (ITS barcode) and the second largest subunit of the RNA polymerase II gene (rpb2). One hundred thirty-nine Russula collections were sequenced, including type material. Ten species are reported from alpine or treeline habitats in the Rocky Mountains. This is the first formal report of R. cf. altaica, R. saliceticola, and R. subrubens from the Rocky Mountains and of R. purpureofusca in North America. Russula laevis is reported for the first time under this name with a voucher, and not as an environmental sample. Previous reports of R. nana and R. laccata are molecularly confirmed. Two species are reported from subalpine habitats at treeline: R. montana with conifers and R. cf. altaica with Betula. In this study, R. laccata, R. subrubens, and R. laevis were collected in alpine habitats but have been reported below treeline in Europe; these species may also be present at lower elevations in North America. Most species have an intercontinental distribution and have been reported in other alpine or Arctic habitats. Two unidentified and potentially new species were only found in North America and are discussed. A key to the alpine Russulas of North America is provided.

Habitat, Snow-Cover and Soil pH, Affect the Distribution and Diversity of Mortierellaceae Species and Their Associations to Bacteria.

Mortierellaceae species are among the most frequent and globally distributed soil fungi. However, the factors shaping their diversity and distribution remain obscure. Several species have been reported to be associated to bacteria, but the kind and frequency of such associations were not addressed up to now. We hypothesized that such associations could be important for Mortierellaceae ecology. Therefore, our aim was to understand the driving factors responsible for the Mortierellaceae diversity, community composition and bacterial associations in alpine and subalpine habitats. For answering our question, we collected both snow-free and snow-covered soil at sampling sites from different habitats: bare alpine soil in a glacier forefield, alpine dwarf-willow habitats, and high-altitude Pinus cembra forests. The isolations were carried out by direct cultivation without any antibiotics to the isolation media. Altogether, we obtained 389 Mortierellaceae isolates representing 29 operational taxonomic units (OTUs). Many OTUs could be placed to the genera Mortierella sensu stricto, Dissophora, Entomortierella, Gamsiella, Linnemannia, and Podila, but others could not unambiguously be assigned to a genus. Our results demonstrate that both, the distribution as well as the diversity of the Mortierellaceae species, were significantly influenced by habitat, soil pH, and snow-cover. We noticed that >30% of our isolates were associated to a non-contaminant bacterium. The bacteria associated to our Mortierellaceae isolates belonged to seven different genera. Pseudomonas was the most frequently detected genus associated to the isolated Mortierellaceae species and it was found to be species-specific. Mortierellaceae–bacteria pairs, including those with Pseudomonas, were influenced by location, habitat, and snow-cover. The majority of the fungus–bacterium associations were potentially epihyphal, but we also detected potential endohyphal bacterial species belonging to Mycoavidus, Burkholderiaceae, and Paraburkholderia. Taken together, the non-random associations we detected suggest that fungus–bacterium associations are ecologically meaningful – an interesting path that needs to be investigated further.

Sequence data from isolated lichen-associated melanized fungi enhance delimitation of two new lineages within Chaetothyriomycetidae

Lichen thalli provide a long-lived and stable habitat for colonization by a wide range of microorganisms. Increased interest in these lichen-associated microbial communities has revealed an impressive diversity of fungi, including several novel lineages which still await formal taxonomic recognition. Among these, members of the Eurotiomycetes and Dothideomycetes usually occur asymptomatically in the lichen thalli, even if they share ancestry with fungi that may be parasitic on their host. Mycelia of the isolates are characterized by melanized cell walls and the fungi display exclusively asexual propagation. Their taxonomic placement requires, therefore, the use of DNA sequence data. Here, we consider recently published sequence data from lichen-associated fungi and characterize and formally describe two new, individually monophyletic lineages at family, genus, and species levels. The Pleostigmataceae fam. nov. and Melanina gen. nov. both comprise rock-inhabiting fungi that associate with epilithic, crust-forming lichens in subalpine habitats. The phylogenetic placement and the monophyly of Pleostigmataceae lack statistical support, but the family was resolved as sister to the order Verrucariales. This family comprises the species Pleostigma alpinum sp. nov., P. frigidum sp. nov., P. jungermannicola, and P. lichenophilum sp. nov. The placement of the genus Melanina is supported as a lineage within the Chaetothyriales. To date, this genus comprises the single species M. gunde-cimermaniae sp. nov. and forms a sister group to a large lineage including Herpotrichiellaceae, Chaetothyriaceae, Cyphellophoraceae, and Trichomeriaceae. The new phylogenetic analysis of the subclass Chaetothyiomycetidae provides new insight into genus and family level delimitation and classification of this ecologically diverse group of fungi.

Using distance sampling with camera traps to estimate the density of group-living and solitary mountain ungulates

AbstractThroughout the Himalaya, mountain ungulates are threatened by hunting for meat and body parts, habitat loss, and competition with livestock. Accurate population estimates are important for conservation management but most of the available methods to estimate ungulate densities are difficult to implement in mountainous terrain. Here, we tested the efficacy of the recent extension of the point transect method, using camera traps for estimating density of two mountain ungulates: the group-living Himalayan blue sheep or bharalPseudois nayaurand the solitary Himalayan musk deerMoschus leucogaster. We deployed camera traps in 2017–2018 for the bharal (summer: 21 locations; winter: 25) in the trans-Himalayan region (3,000–5,000 m) and in 2018–2019 for the musk deer (summer: 30 locations; winter: 28) in subalpine habitats (2,500–3,500 m) in the Upper Bhagirathi basin, Uttarakhand, India. Using distance sampling with camera traps, we estimated the bharal population to be 0.51 ± SE 0.1 individuals/km2(CV = 0.31) in summer and 0.64 ± SE 0.2 individuals/km2(CV = 0.37) in winter. For musk deer, the estimated density was 0.4 ± SE 0.1 individuals/km2(CV = 0.34) in summer and 0.1 ± SE 0.05 individuals/km2(CV = 0.48) in winter. The high variability in these estimates is probably a result of the topography of the landscape and the biology of the species. We discuss the potential application of distance sampling with camera traps to estimate the density of mountain ungulates in remote and rugged terrain, and the limitations of this method.