Structure Of Xylan Research Articles

Isolation and characterization of acetylated glucuronoarabinoxylan from sugarcane bagasse and straw

Sugarcane bagasse and straw are generated in large volumes as by-products of agro-industrial production. They are an emerging valuable resource for the generation of hemicellulose-based materials and products, since they contain significant quantities of xylans (often twice as much as in hardwoods). Heteroxylans (yields of ca 20% based on xylose content in sugarcane bagasse and straw) were successfully isolated and purified using mild delignification followed by dimethyl sulfoxide (DMSO) extraction. Delignification with peracetic acid (PAA) was more efficient than traditional sodium chlorite (NaClO2) delignification for xylan extraction from both biomasses, resulting in higher extraction yields and purity. We have shown that the heteroxylans isolated from sugarcane bagasse and straw are acetylated glucuronoarabinoxylans (GAX), with distinct molecular structures. Bagasse GAX had a slightly lower glycosyl substitution molar ratio of Araf to Xylp to (0.5:10) and (4-O-Me)GlpA to Xylp (0.1:10) than GAX from straw (0.8:10 and 0.1:10 respectively), but a higher degree of acetylation (0.33 and 0.10, respectively). A higher frequency of acetyl groups substitution at position α-(1→3) (Xyl-3Ac) than at position α-(1→2) (Xyl-2Ac) was confirmed for both bagasse and straw GAX, with a minor ratio of diacetylation (Xyl-2,3Ac). The size and molecular weight distributions for the acetylated GAX extracted from the sugarcane bagasse and straw were analyzed using multiple-detection size-exclusion chromatography (SEC-DRI-MALLS). Light scattering data provided absolute molar mass values for acetylated GAX with higher average values than did standard calibration. Moreover, the data highlighted differences in the molar mass distributions between the two isolation methods for both types of sugarcane GAX, which can be correlated with the different Araf and acetyl substitution patterns. We have developed an empirical model for the molecular structure of acetylated GAX extracted from sugarcane bagasse and straw with PAA/DMSO through the integration of results obtained from glycosidic linkage analysis, 1H NMR spectroscopy and acetyl quantification. This knowledge of the structure of xylans in sugarcane bagasse and straw will provide a better understanding of the isolation-structure-properties relationship of these biopolymers and, ultimately, create new possibilities for the use of sugarcane xylan in high-value applications, such as biochemicals and bio-based materials.

Cornstalk liquefaction in sub- and super-critical ethanol: Characterization of solid residue and the liquefaction mechanism

Cornstalk liquefaction in sub- and super-critical ethanol was carried out in an autoclave at various temperatures. The characteristics of solid residue were investigated by XRD and sugar analysis. Milled solid residue fraction was isolated from the solid residue, and its chemical characteristics were comparatively investigated with milled wood lignin of cornstalk by gel permeation chromatography, FT-IR, and 2D HSQC NMR. The results showed that the structure of xylan in cornstalk was not broken down completely under the reaction temperatures and those liquefaction conditions were unable to break effectively apart the inter/intra chain hydrogen bonding in cellulose fibrils. Characterization of milled solid residue showed that the de-polymerization of lignin was more dominant than the re-polymerization as reaction temperature increased from 180 to 300 °C. The β-O-4, ferulate, tricin substructures almost disappeared from the spectrum of milled solid residue, which indicated the re-polymerization or decomposition of those bonds in lignin during cornstalk liquefaction process. The result showed that characterization of solid residue fractions provided some new information of the mechanisms about cornstalk liquefaction in ethanol.

Structural Basis for the Formation and Regulation of Lignin–Xylan Bonds in Birch

The covalent connectivity between lignin and polysaccharides forming the so-called lignin–carbohydrate complexes (LCCs) is important to obtain fundamental knowledge on wood formation and may shed light on molecular aspects of wood processing. Although widely studied, unequivocal proofs of their existence in native-state biomass are still lacking, mainly because of harsh preanalytical fractionation conditions that could cause artifacts. In the present study, we applied a mild protocol for quantitative fractionation of LCCs and performed detailed structural studies using 2D HSQC NMR spectroscopy, 31P NMR spectroscopy, and thioacidolysis in combination with GC–MS and GC with flame ionization detection. The detailed structural analysis of LCCs, including both lignin and the carbohydrate skeleton, unveiled insights into the role of molecular structure of xylan on the type of lignin–carbohydrate (LC) bonds formed. More specifically, it is shown that xylan LCCs differ in the degree of substitution of hydroxyl functionality on the xylan skeleton by the presence of acetyl- or 4-O-methylglucuronic acid. The highly substituted xylan had a lower prevalence of phenyl glycosidic and benzyl ether LC bond types than the lowly substituted xylan. In addition, structural differences in the lignin part of the LCCs were observed. On the basis of the results, it is suggested that acetylation on xylan regulates the type and frequency of LC bonds.

The two Rasamsonia emersonii α-glucuronidases, ReGH67 and ReGH115, show a different mode-of-action towards glucuronoxylan and glucuronoxylo-oligosaccharides.

BackgroundThe production of biofuels and biochemicals from grass-type plant biomass requires a complete utilisation of the plant cellulose and hemicellulosic xylan via enzymatic degradation to their constituent monosaccharides. Generally, physical and/or thermochemical pretreatments are performed to enable access for the subsequent added carbohydrate-degrading enzymes. Nevertheless, partly substituted xylan structures remain after pretreatment, in particular the ones substituted with (4-O-methyl-)glucuronic acids (UAme). Hence, α-glucuronidases play an important role in the degradation of UAmexylan structures facilitating the complete utilisation of plant biomass. The characterisation of α-glucuronidases is a necessity to find the right enzymes to improve degradation of recalcitrant UAmexylan structures.ResultsThe mode-of-action of two α-glucuronidases was demonstrated, both obtained from the fungus Rasamsonia emersonii; one belonging to the glycoside hydrolase (GH) family 67 (ReGH67) and the other to GH115 (ReGH115). Both enzymes functioned optimal at around pH 4 and 70 °C. ReGH67 was able to release UAme from UAme-substituted xylo-oligosaccharides (UAmeXOS), but only the UAme linked to the non-reducing end xylosyl residue was cleaved. In particular, in a mixture of oligosaccharides, UAmeXOS having a degree of polymerisation (DP) of two were hydrolysed to a further extent than longer UAmeXOS (DP 3–4). On the contrary, ReGH115 was able to release UAme from both polymeric UAmexylan and UAmeXOS. ReGH115 cleaved UAme from both internal and non-reducing end xylosyl residues, with the exception of UAme attached to the non-reducing end of a xylotriose oligosaccharide.ConclusionIn this research, and for the first time, we define the mode-of-action of two α-glucuronidases from two different GH families both from the ascomycete R. emersonii. To date, only four α-glucuronidases classified in GH115 are characterised. ReGH67 showed limited substrate specificity towards only UAmeXOS, cleaving UAme only when attached to the non-reducing end xylosyl residue. ReGH115 was much less substrate specific compared to ReGH67, because UAme was released from both polymeric UAmexylan and UAmeXOS, from both internal and non-reducing end xylosyl residues. The characterisation of the mode-of-action of these two α-glucuronidases helps understand how R. emersonii attacks UAmexylan in plant biomass and the knowledge presented is valuable to improve enzyme cocktails for biorefinery applications.Electronic supplementary materialThe online version of this article (doi:10.1186/s13068-016-0519-9) contains supplementary material, which is available to authorized users.

Evolutionary Conservation of Xylan Biosynthetic Genes in Selaginella moellendorffii and Physcomitrella patens.

Xylan is a major cross-linking hemicellulose in secondary walls of vascular tissues, and the recruitment of xylan as a secondary wall component was suggested to be a pivotal event for the evolution of vascular tissues. To decipher the evolution of xylan structure and xylan biosynthetic genes, we analyzed xylan substitution patterns and characterized genes mediating methylation of glucuronic acid (GlcA) side chains in xylan of the model seedless vascular plant, Selaginella moellendorffii, and investigated GT43 genes from S. moellendorffii and the model non-vascular plant, Physcomitrella patens, for their roles in xylan biosynthesis. Using nuclear magentic resonance spectroscopy, we have demonstrated that S. moellendorffii xylan consists of β-1,4-linked xylosyl residues subsituted solely with methylated GlcA residues and that xylans from both S. moellendorffii and P. patens are acetylated at O-2 and O-3. To investigate genes responsible for GlcA methylation of xylan, we identified two DUF579 genes in the S. moellendorffii genome and showed that one of them, SmGXM, encodes a glucuronoxylan methyltransferase capable of adding the methyl group onto the GlcA side chain of xylooligomers. Furthermore, we revealed that the two GT43 genes in S. moellendorffii, SmGT43A and SmGT43B, are functional orthologs of the Arabidopsis xylan backbone biosynthetic genes IRX9 and IRX14, respectively, indicating the evolutionary conservation of the involvement of two functionally non-redundant groups of GT43 genes in xylan backbone biosynthesis between seedless and seed vascular plants. Among the five GT43 genes in P. patens, PpGT43A was found to be a functional ortholog of Arabidopsis IRX9, suggesting that the recruitment of GT43 genes in xylan backbone biosynthesis occurred when non-vascular plants appeared on land.

Determination of the modes of action and synergies of xylanases by analysis of xylooligosaccharide profiles over time using fluorescence-assisted carbohydrate electrophoresis.

The structure of xylan, which has a 1,4-linked β-xylose backbone with various substituents, is much more heterogeneous and complex than that of cellulose. Because of this, complete degradation of xylan needs a large number of enzymes that includes GH10, GH11, and GH3 family xylanases together with auxiliary enzymes. Fluorescence-assisted carbohydrate electrophoresis (FACE) is able to accurately differentiate unsubstituted and substituted xylooligosaccharides (XOS) in the heterogeneous products generated by different xylanases and allows changes in concentrations of specific XOS to be analyzed quantitatively. Based on a quantitative analysis of XOS profiles over time using FACE, we have demonstrated that GH10 and GH11 family xylanases immediately degrade xylan into sizeable XOS, which are converted into smaller XOS in a much lower speed. The shortest substituted XOS produced by hydrolysis of the substituted xylan backbone by GH10 and GH11 family xylanases were MeGlcA(2) Xyl3 and MeGlcA(2) Xyl4 , respectively. The unsubstituted xylan backbone was degraded into xylose, xylobiose, and xylotriose by both GH10 and GH11 family xylanases; the product profiles are not family-specific but, instead, depend on different subsite binding affinities in the active sites of individual enzymes. Synergystic action between xylanases and β-xylosidase degraded MeGlcA(2) Xyl4 into xylose and MeGlcA(2) Xyl3 but further degradation of MeGlcA(2) Xyl3 required additional enzymes. Synergy between xylanases and β-xylosidase was also found to significantly accelerate the conversion of XOS into xylose.

Hot-compressed water extraction of polysaccharides from soy hulls

The polysaccharides of soy hulls were extracted by hot-compressed water at temperatures of 110 from 180°C and various treatment times (10–150min) in a batch system. It was determined that a moderate temperature and short time are suitable for the preparation of polysaccharides. The structure of xylan and the inter- and intra-chain hydrogen bonding of cellulose fibrils in the soy hulls were not significantly broken down. The polysaccharides obtained were primarily composed of α-l-arabinofuranosyl units, 4-O-methyl-glucuronic acid units and α-d-galactose units attached with substituted units. A sugar analysis indicated that arabinose was the major component, constituting 35.6–46.9% of the polysaccharide products extracted at 130°C, 140°C, and 150°C. This investigation contributes to the knowledge of the polysaccharides of soy by-products, which can reduce the environmental impact of waste from the food industries.

An unusual xylan in Arabidopsis primary cell walls is synthesised by GUX3, IRX9L, IRX10L and IRX14.

Xylan is a crucial component of many plant primary and secondary cell walls. However, the structure and function of xylan in the dicotyledon primary cell wall is not well understood. Here, we characterized a xylan that is specific to tissues enriched in Arabidopsis primary cell walls. Unlike previously described xylans, this xylan carries a pentose linked 1–2 to the α-1,2-d-glucuronic acid (GlcA) side chains on the β-1,4-Xyl backbone. The frequent and precisely regular spacing of GlcA substitutions every six xylosyl residues along the backbone is also unlike that previously observed in secondary cell wall xylan. Molecular genetics, in vitro assays, and expression data suggest that IRX9L, IRX10L and IRX14 are required for xylan backbone synthesis in primary cell wall synthesising tissues. IRX9 and IRX10 are not involved in the primary cell wall xylan synthesis but are functionally exchangeable with IRX9L and IRX10L. GUX3 is the only glucuronyltransferase required for the addition of the GlcA decorations on the xylan. The differences in xylan structure in primary versus secondary cell walls might reflect the different roles in cross-linking and interaction with other cell wall components.

A molecular modeling approach to understand the structure and conformation relationship of (GlcpA)Xylan

The structure and conformation relationships of a heteropolysaccharide (GlcpA)Xylan in terms of various molecular weights, Xylp/GlcpA ratio and the distribution of GlcpA along xylan chain were investigated using computer modeling. The adiabatic contour maps of xylobiose, XylpXylp(GlcpA) and (GlcpA)XylpXylp(GlcpA) indicated that the insertion of the side group (GlcpA) influenced the accessible conformational space of xylobiose molecule. RIS-Metropolis Monte Carlo method indicated that insertion of GlcpA side chain induced a lowering effect of the calculated chain extension at low GlcpA:Xylp ratio (GlcpA:Xylp=1:3). The chain, however, became extended when the ratio of GlcpA:Xylp above 2/3. It was also shown that the spatial extension of the polymer chains was dependent on the distribution of side chain: the random distribution demonstrated the most flexible structure compared to block and alternative distribution. The present studies provide a unique insight into the dependence of both side chain ratio and distribution on the stiffness and flexibility of various (GlcpA)Xylan molecules.

Effect of xylan structure on reactivity in graft copolymerization and subsequent binding to cellulose.

The grafting reactivities with glycidyl methacrylate (GMA) of five xylans from hardwood and cereal sources were compared. The structural property that best predicted the reactivities of xylans with GMA was the fraction of 4-O-methylglucuronic acid (MeGlcA) substitution. A comparatively high level of arabinose substitution was also positively correlated to reactivity with GMA. The impact of MeGlcA and arabinose branching groups is likely attributed to the solubilizing effect of these substituents. Consistent with this prediction, low water solubility and high lignin content were found to hinder reactivity. Even though oligomeric substrates have the advantage of water solubility, modified xylo-oligosaccharides were difficult to purify. Accordingly, delignified and high-molecular weight xylans that are soluble or dispersible in water are best suited for this type of backbone derivatization. Adsorption studies with a quartz crystal microbalance with dissipation indicated that grafting lowered the total adsorption of arabinoxylan but did not significantly affect the fraction of xylans adsorbed irreversibly on cellulose.

Green synthesis of silver nanoparticles in xylan solution via Tollens reaction and their detection for Hg(2+).

This work reported a facile and green method to prepare highly stable and uniformly distributed Ag nanoparticles (AgNPs), in which a biopolymer xylan was used as the stabilizing and reducing agent via the Tollens reaction under microwave irradiation. Different variables were evaluated to optimize the reaction conditions. Complete characterization was performed using UV-Vis, XRD, TEM, size distribution analysis and XPS. The results revealed that AgNPs were well dispersed with diameters of 20-35 nm due to the packing of xylan. The optimal conditions were as follows: microwave irradiation temperature was 60-70 °C, microwave power was 800 W, microwave time was 30 min, the ratio of xylan to AgNO3 was 50 mg: 0.13 mmol, and ammonia concentration was 2%. In addition, the AgNPs were collected via high-speed centrifugal separation, and the supernatant was tested by HPAEC, GPC, FT-IR, and NMR. By comparing the structure of xylan before and after the reaction, the reaction mechanism was discussed. It was noted that the xylan-AgNPs composites showed high selectivity and sensitivity for Hg(2+) detection. The other 15 metal ions used had no obvious effect on the detection of Hg(2+), and the limit of detection (LOD) was 4.6 nM, which is lower than the allowed maximum level of 30 nM for drinking water by WHO. In addition, the xylan-AgNPs composites can be applied for Hg(2+) detection in real water samples. This study provides a novel way for the high-value utilization of a rich biomass resource, and a green method for the synthesis of AgNPs for the selective and sensitive detection of harmful heavy metals.

Modular modification of xylan with UV-initiated thiol-ene reaction

Birch xylan was functionalized with various thiols through UV initiated radical thiol-ene reaction under mild conditions. Xylan was allylated through etherification with allyl glycidyl ether under alkaline conditions. The allylated xylan was then reacted with thiols containing varying functional groups: trimethylbenzyl mercaptan, dodecanethiol, thioglycolic acid, l-cysteine and cysteamine hydrochloride. The reactions were conducted under homogeneous conditions at room temperature, either in water (hydrophilic thiols) or in DMF (hydrophobic thiols). The effect of reaction parameters to the functionalization efficiency was studied, including, for example, thiol excess, thiol character, initiator amount and reaction mixture concentration. The reactions were fast and 100% conversion of allyl groups was reached in most cases, sometimes already within 10min. Water as solvent resulted generally in faster reactions when compared to DMF, and it was possible to conduct the aqueous reaction even without added UV initiator. It was also possible to incorporate two functionalities simultaneously during one reaction into the xylan structure.

Retention and Structure of Xylans from Eucalyptus Globulus Genotypes with Different Pulpwood Characteristics

In this work, six different genotypes of Eucalyptus globulus were selected on the basis of their differences in wood density and pulp yield. The trees were separated into two groups of three genotypes each: group I (samples Eg1, Eg2, and Eg3) presented wood density values of 547–573 kg/m3 and pulp yields of 52.7–54.6%; group II (samples Eg4, Eg5, and Eg6) presented wood density of 471–485 kg/m3 and pulp yields of 49.8–52.3%. Chemical characterization showed that genotypes of group I also presented high glucose and low lignin content as compared with genotypes from group II. Xylans content was lower in samples of group I than group II. Kraft pulps from group I presented high retention of xylans in comparison with pulps from group II. This behavior was associated with a high degree of substitution (DS) of the xylose units with methylglucuronic acids in wood and in kraft pulps in samples of group I compared with group II. Xylans isolated from wood samples of group I also presented slightly higher molar mass than xylans from group II. Results showed that xylans from a single species presented differences in their retention and structure that affected the pulp yield of E. globulus.

Photo-degradation of Methyl Orange by Polysaccharides/LaFe0.8Cu0.2O3 Composite Films

The objective of this work was to prepare a series of composite films (polysaccharides with LaFe0.8Cu0.2O3) for the degradation of methyl orange under ultraviolet irradiation. LaFe0.8Cu0.2O3 was prepared by a sol-gel method, and the composite films were obtained by cross-linking reactions between polysaccharides (xylan and chitosan) and LaFe0.8Cu0.2O3. Physical and chemical properties of the composite films were investigated by XRD, FTIR, SEM, and BET. Moreover, the influence of the weight ratio of polysaccharide to LaFe0.8Cu0.2O3 on the methyl orange degradation reaction was also studied. Results showed that 67% of the degradation efficiency was achieved within 480 min using chitosan/LaFe0.8Cu0.2O3 (2:1) as photocatalysts, while 58% was for xylan/LaFe0.8Cu0.2O3 (1:1). The difference was due to the variety in the structure of chitosan and xylan.

Impact of xylan structure and lignin–xylan association on methane production from C5-sugars

Xylan biopolymers are the dominant hemicelluloses present in agricultural plant materials which have potential use in various biotechnological processes including methane production. Hence, the effect of lignin content and the structural features of xylan on anaerobic digestion were studied by using synthetic assemblies consisting of xylans and lignin models (dehydrogenation polymers). The ramification by arabinose and uronic acid was shown to be a key factor in low methane potential (BMP) from xylans and xylan–lignin assemblies. Indeed, BMP increased when xylose content was increased, and decreased when arabinose and uronic acid contents were increased. Lignin content and molecular weight were found to be the most influential parameters on the anaerobic digestion rate. Digestion rate decreased when the lignin content and molecular mass increased.

Assembly of Debranched Xylan from Solution and on Nanocellulosic Surfaces

This study focused on the assembly characteristics of debranched xylan onto cellulose surfaces. A rye arabinoxylan polymer with an initial arabinose/xylose ratio of 0.53 was debranched with an oxalic acid treatment as a function of time. The resulting samples contained reduced arabinose/xylose ratios significantly affecting the molecular architecture and solution behavior of the biopolymer. With this treatment, an almost linear xylan with arabinose DS of only 0.04 was obtained. The removal of arabinose units resulted in the self-assembly of the debranched polymer in water into stable nanoparticle aggregates with a size around 300 nm with a gradual increase in crystallinity of the isolated xylan. Using quartz crystal microbalance with dissipation monitoring, the adsorption of xylan onto model cellulose surfaces was quantified. Compared to the nonmodified xylan, the adsorption of debranched xylan increased from 0.6 to 5.5 mg m(-2). Additionally, adsorption kinetics suggest that the nanoparticles rapidly adsorbed to the cellulose surfaces compared to the arabinoxylan. In summary, a control of the molecular structure of xylan influences its ability to form a new class of polysaccharide nanoparticles in aqueous suspensions and its interaction with nanocellulose surfaces.

A gel-state 2D-NMR method for plant cell wall profiling and analysis: a model study with the amorphous cellulose and xylan from ball-milled cotton linters

Amorphous cellulose and xylan structures were analyzed using high-resolution 2D-NMR, and the NMR data were obtained in a DMSO-d6/pyridine-d5 (4 : 1) solvent system.

Organic/Inorganic Superabsorbent Hydrogels Based on Xylan and Montmorillonite

The unique organic/inorganic superabsorbent hydrogels based on xylan and inorganic clay montmorillonite (MMT) were prepared via grafting copolymerization of acrylic acid (AA) and 2‐acrylamido‐2‐methylpropanesulfonic acid (AMPS) with N,N‐methylenebisacrylamide (MBA) as a cross‐linking agent and potassium persulfate (KPS) as an initiator. The effect of variables on the swelling capacity of the hydrogels, such as the weight ratios of MMT/xylan, MBA/xylan, and AMPS/AA, was systematically optimized. The results indicated that the superabsorbent hydrogels comprised a porous cross‐linking structure of MMT and xylan with side chains that carry carboxylate, carboxamide, and sulfate. The hydrogels exhibit the high compressive modulus (E), about 35–55 KPa, and the compression strength of the hydrogels increased with an increment of the MMT content. The effect of various cationic salt solutions (LiCl, CaCl2, and FeCl3) on the swelling has the following order: Li+ > Ca2+ > Fe3+. Furthermore, the influence of pH values on swelling behaviors showed that the superabsorbent composites retained around 1000 g g−1 over a wide pH range of 6.0–10.0. The xylan‐based hydrogels with the high mechanical and swelling properties are promising for the applications in the biomaterials area.

Impact of extended-impregnation cooking on the xylan structure in Eucalyptus urograndis kraft pulps

Article Impact of extended-impregnation cooking on the xylan structure in Eucalyptus urograndis kraft pulps was published on December 1, 2013 in the journal Nordic Pulp & Paper Research Journal (volume 28, issue 4).

Development and application of a high throughput carbohydrate profiling technique for analyzing plant cell wall polysaccharides and carbohydrate active enzymes

BackgroundPlant cell wall polysaccharide composition varies substantially between species, organs and genotypes. Knowledge of the structure and composition of these polysaccharides, accompanied by a suite of well characterised glycosyl hydrolases will be important for the success of lignocellulosic biofuels. Current methods used to characterise enzymatically released plant oligosaccharides are relatively slow.ResultsA method and software was developed allowing the use of a DNA sequencer to profile oligosaccharides derived from plant cell wall polysaccharides (DNA sequencer-Assisted Saccharide analysis in High throughput, DASH). An ABI 3730xl, which can analyse 96 samples simultaneously by capillary electrophoresis, was used to separate fluorophore derivatised reducing mono- and oligo-saccharides from plant cell walls. Using electrophoresis mobility markers, oligosaccharide mobilities were standardised between experiments to enable reproducible oligosaccharide identification. These mobility markers can be flexibly designed to span the mobilities of oligosaccharides under investigation, and they have a fluorescence emission that is distinct from that of the saccharide labelling. Methods for relative and absolute quantitation of oligosaccharides are described. Analysis of a large number of samples is facilitated by the DASHboard software which was developed in parallel. Use of this method was exemplified by comparing xylan structure and content in Arabidopsis thaliana mutants affected in xylan synthesis. The product profiles of specific xylanases were also compared in order to identify enzymes with unusual oligosaccharide products.ConclusionsThe DASH method and DASHboard software can be used to carry out large-scale analyses of the compositional variation of plant cell walls and biomass, to compare plants with mutations in plant cell wall synthesis pathways, and to characterise novel carbohydrate active enzymes.