Assemblage Structure Research Articles

Challenges for assessment of cohabiting stocks of argentine shortfin squid Illex argentinus using parasites as biological tags

The Argentine shortfin squid Illex argentinus is one of the most important commercial species for the Argentine fisheries. The understanding of its stock structure is therefore necessary to ensure fishery sustainability and, given the relevance of squids in the regional food web, for biodiversity conservation. An overlap between parasitology and fisheries lies in the use of parasites as biological tags to identify the stock composition of exploited resources, however, the efficiency of this methodology has been questioned for stock assessment in cephalopods. In this work, the value of parasite assemblages of I. argentinus to discriminate between the co-occurring summer spawning stock (SSS) and south patagonic stock (SPS) in a mixing area over the Patagonian continental shelf during summer was evaluated for two cohorts. Five shortfin squid samples corresponding to SSS and SPS were examined for metazoan parasites. The squid size affected the parasite assemblage similarities, conversely, no gender effect on the infracommunities was observed. Multivariate analysis evidenced similarity in parasite assemblage composition and structure between both stocks captured in the mixing area on the same date. This similarity was related to the presence of short-lived trophically transmitted parasites, which are associated with their recently consumed food items and, indirectly, to the oceanographic conditions. The same set of host and environmental variables were identified as the most probable causes of the temporal variability observed in parasite assemblages between SPS cohorts and even intra-cohort. Despite the value of parasites as tags for discriminating squid stocks may have little value when cohabiting stocks are analysed, their variability could serve as a valuable indicator of environmental conditions. The use of parasites as biological tags to discriminate stocks needs to be verified at different spatiotemporal scales, including samples from other non-sympatric stocks in the analyses.

A framework for integrating stream ecosystem theories into spatial modeling of fish richness and assemblage structure

A framework for integrating stream ecosystem theories into spatial modeling of fish richness and assemblage structure

Relationships between environmental variables and fish functional groups in impounded reaches of the Upper Mississippi and Yangtze Rivers

Large rivers throughout the world have been transformed by anthropogenic stressors that are known to influence the structure and composition of fish assemblages. Management of large rivers requires balancing socio-economic and political considerations with biodiversity conservation efforts. By exchanging best management practices between rivers, management efforts can be improved. However, data limitations have largely prevented comparative analyses among fish assemblages in large rivers, potentially limiting the effectiveness of shared management strategies. To improve understanding of the similarities and differences between the Upper Mississippi and Yangtze Rivers, we (1) compared environmental variables and functional traits of fish assemblages between the two systems, (2) identified traits responsible for distinguishing functional groups from one another, and (3) investigated relationships between similar functional groups of fishes and environmental variables to establish expectations for how fish assemblages in large rivers might respond to anthropogenic stressors. Regional species pools in the Upper Mississippi and Upper Yangtze Rivers were characterized by a similar composition of functional traits; the majority of species were omnivorous, had affinities for gravel or sand substrates, and produced sinking eggs. Few species were pelagic, planktivorous, or herbivorous. Functional groups in both rivers were primarily distinguished according to species' trophic habits and substrate preferences, with secondary contributions from species’ water column positions and life history characteristics. Pelagic planktivores and small-bodied guarders with an affinity for structural habitat complexity tended to increase downriver in both systems, in direct association with total phosphorus concentrations, agricultural land use, and temperature. In contrast, proportions of lithophilic species with affinities for gravel or cobble substrates were highest in segments located furthest upriver. By highlighting the sensitivity of different groups of fishes to anthropogenic stressors, we provide insights into the functional ecology of fishes inhabiting the Mississippi and Yangtze Rivers.

Suspended particulate matter in the Gulf of Oman: Spatial variations in concentration, bulk composition, and particulate metals controlled by physical and biogeochemical processes

The present work aims to assess the biogeochemical and physical sources of variation in the spatial distribution of suspended particulate matter (SPM), its major biotic and abiotic components, particulate metals, and the Redfield (N:P) stoichiometry of particles in a poorly understood basin of the Gulf of Oman. Particulate samples were collected in February 2022 from the Gulf of Oman aboard the R/V Persian Gulf Explorer, revealing surface SPM concentrations ranging from 140 to 1145 μg/l. The elemental composition of crustal-type elements in the surface offshore region confirmed the input of lithogenic components by aeolian dust from the surrounding deserts. The highest mid-depth SPM levels, with remarkable contribution from CaCO3, were observed at the western shelf edge at 100–300 m depth, supported by the Persian Gulf outflow. Conversely, mid-depth maxima with elevated concentrations of terrigenous elements were observed in the eastern edge, emanating from sediment resuspension and lateral transport under eddy-topography interaction. Organic matter is the most important phase, followed by biogenic silica from the basin-wide winter bloom of diatoms. While signs of CaCO3 dissolution are evident at depths >500 m, the oxidative precipitation of Mn (II) in the upper boundary of the oxygen minimum zone leads to the appearance of perceptible maxima in the vertical profile of particulate MnO2. Seasonal variations in the organic N:P ratio, from summer to winter, at the western station were linked to shifts in phytoplankton assemblage structure, transitioning from cyanobacteria dominance in summer to chain-forming diatoms in winter. The particulate pool of biologically important trace metals was dominated by a non-crustal fraction with enrichment factor followed a descending order: Cd > Mo > Pb > Zn > Ni in surface offshore samples. Metal/P ratios comparison with some previous data from the open ocean SPM and lab cultures of phytoplankton reveals that the Zn/P ratio is significantly exceeded in cultured communities, whereas the Cd/P ratio reflected the consistent demand in the Gulf of Oman compared to reported lab culture requirements.

Context‐dependent effects of geographic, climate and land cover factors on hemipteran assemblages in different ecoregions of China

Abstract Understanding variation in assemblage composition (i.e., beta diversity) along geographic and environmental gradients is a central topic in biogeography and ecology. We compared relationships between hemipteran beta diversity (overall dissimilarity: βtotal, Sorensen dissimilarity; turnover component: βsim, the replacement of species between assemblages; nestedness‐resultant component: βsne, the nested difference in richness between assemblages) and geographic, climatic and land cover distances among four ecoregions (Northeast Ecoregion; Northern Ecoregion; Tibet Ecoregion; Southern Ecoregion) across China. The hemipteran assemblage composition differed markedly among ecoregions. In general, βtotal and βsim both significantly increased with increasing geographic, climatic and land cover distances. Intercepts and slopes of dissimilarity‐distance relationships all varied significantly among different ecoregions, suggesting different levels of within‐ecoregion assemblage heterogeneity and change rate in assemblage composition. Moreover, the slopes of βtotal and βsim were highest in Northeast Ecoregion but lowest in Northern Ecoregion, exhibiting latitudinal and longitudinal dissimilarity pattern. According to variation partitioning analysis, although the overall explained variance was relatively low, spatial variables explained a much greater proportion of variance compared to climate and land cover variables. To conclude, our results showed significant regional differences in assemblage composition and biodiversity among ecoregions. Both dispersal‐related and niche‐related processes affect hemipteran assemblage structure, while the low overall explained variance indicates that high dissimilarity in hemipteran composition is affected by multiple factors and processes that remained undetected in this study. Our results may be relevant for wider insect groups because hemipterans constitute a highly diverse group in terms of phylogenetic origins and functional significance.

Indirect Effects of Cattle Trampling on the Structure of Fruit-Feeding Butterfly Assemblages Inhabiting Restinga Forests in Southern Brazil

The impacts of anthropogenic activities are increasing at alarming rates, leading to biodiversity loss and the displacement of native habitats. One of the main contributors to human disturbances is livestock farming, which degrades native habitats through cattle grazing and trampling. To understand these impacts, we investigated the effects of cattle trampling on the structure and diversity of fruit-feeding butterflies in Restinga forests of southern Brazil. We addressed questions regarding the effects of cattle raising on butterfly diversity and composition, identified indicator species, and examined the influence of environmental variables on butterfly richness, dominance, abundance, and species composition. Our dataset comprises the long-term monitoring of fruit-feeding butterflies in Restinga forests from 2014 to 2019, across sites with low, medium, and high levels of disturbance due to cattle trampling. We found that medium and high levels of disturbance increased butterfly richness and abundance, whereas low-level disturbance was associated with lower abundance. Additionally, the species composition of butterflies in medium to highly disturbed sites differed from that in preserved Restinga forests, indicating that any perturbation can markedly alter alpha and beta diversity parameters. These changes simplify the native forest structure, open the canopy, disrupt the understory, and favor butterfly species commonly associated with disturbed forests.

Diversity in Irish and British avifauna assemblages: What can variation in diversity profiles reveal about the forces that drive assemblage composition and structure?

Ireland and Britain are two islands located at Europe's westernmost edge, both of which act as the final breeding outposts for many bird species within their European ranges. Despite their similar geographic locations and geological histories, Ireland and Britain host different breeding avifauna assemblages. Diversity profiles, which can serve as more robust alternatives to classic diversity indices, were employed in this study to explore disparities in the two islands' breeding avifauna assemblages. Variations in assemblages were explored, along with their potential drivers, through analyses at three levels: island-scale breeding bird assemblage compositions, island-scale diversity profiles considering 49 common breeding species, and habitat-specific diversity profiles considering assemblages in east/central Irish farmland and East Anglian farmland. Analysis of the two islands' breeding avifauna assemblages revealed that the Irish assemblage is a complete subset of the British assemblage. Analyses of Irish and British assemblages at both an island scale and a habitat scale revealed patterns linking land use to trends within the two islands' avifauna assemblages. Irish assemblages contained greater proportions of insectivorous farmland species by abundance, while British assemblages contained greater proportions of seed-eating farmland species; both trends appeared to be related to structural differences in agricultural land use on the two islands. The British and East Anglian assemblages exhibited higher diversity across all analyses, which appeared to be driven by the assemblages' higher relative abundances of species that were most genetically distinct. This study highlights the ability of diversity profiles to impart more information than classic diversity indices by incorporating species similarity data.

Ecological perspectives on water quality and zooplankton diversity in the Ravi River

AbstractFreshwater ecosystems are intricately linked to the diversity and abundance of zooplankton assemblages, which serve as vital indicators of environmental conditions. The aim of the present study was to investigate the habitat ecology in relation to zooplankton abundance of the Ravi River. Sampling was conducted at selected sampling sites along the Ravi River basin, encompassing various habitat types and environmental gradients. A total of 13 species of zooplankton were observed during the study in which Copepoda was most dominant followed by Cladocera. Cyclops sp. (152 ind/L) and Bosmina sp. (145 ind/L) were the dominant genera throughout the study. Asplanchana sp. (44 ind/L) was observed as a rare species during the study. Some habitat ecological parameters like water temperature, dissolved oxygen, and total dissolved solids show a declining trend in Zone 3. Turbidity was highest in Zone 3 and lowest in Zone 1, and almost all zooplankton genera showed a declining trend in Zone 3. Dissolved oxygen shows a significant positive correlation and directly influences the distribution of zooplankton assemblage structure. This study concludes that certain anthropogenic activities like municipal dumping, sand mining, and altered water flow have negatively impacted water quality and zooplankton diversity in the Ravi River. So, these types of activities should be monitored regularly and controlled immediately.

At the base of deep-sea food webs: Assemblage and trophic structure of suprabenthos and zooplankton in submarine canyons

Submarine canyons act as hotspots of biodiversity, hosting vulnerable marine ecosystems, and playing a fundamental role in bridging coastal zones with deeper areas. Here, we investigated the suprabenthic and Deep Scattering Layer (DSL) zooplankton fauna, that play a key role in deep-sea food webs, as main resources for both mobile and sessile megafauna, in two submarine canyons (Squillace and Amendolara) of the Ionian Sea (Central Mediterranean Sea). Our results highlighted different taxonomic and functional diversity between the two adjacent canyons: (i) biomass and abundance of suprabenthos followed an opposite trend in the two canyons, increasing both with depth in Amendolara (higher abundance and biomass in the lower part of the canyon), and decreasing with depth in Squillace (greater in the head of the canyon); (ii) DSL zooplankton abundance and biomass followed a spatial distribution, decreasing with increasing distance from the coast for both canyons (i.e. lower offshore than at the head of the canyon). Food-web structure investigated by means of stable isotope analysis of δ13C and δ15N showed a more diverse trophic niche for suprabenthos than for zooplankton. Furthermore, possible feeding modes of species with unknown feeding behaviour have been proposed. The results of the current article highlight the different ecological processes occurring within each canyon. Understanding the spatial variations of communities inhabiting submarine canyons, especially those at the base of deep-sea food webs which can act as driver of megafaunal communities (both sessile and mobile-commercial species), is essential to focalise future conservation efforts.

Seabird inputs drive changes in Cladocera assemblages in freshwater ponds

Seabirds are biovectors that transport large concentrations of nutrients from their marine feeding areas to terrestrial breeding grounds. Here, we used subfossil cladoceran assemblages to assess if, and how, changes in the world’s largest colony of Leach’s Storm Petrels affected the structure of Cladocera assemblages over the past ~1700 years. Using sediment cores from four ponds impacted by Leach’s Storm-Petrel colonies on Baccalieu Island (NL, Canada), we observed a consistent transition in cladoceran assemblages from benthic/littoral to pelagic taxa in association with high seabird presence. This shift aligns with previously published limnological changes that tracked the growth of the colony. Compared to trends in sedimentary chlorophyll-a, pelagic cladoceran taxa lagged behind algal shifts driven by seabird activity. The main drivers of cladoceran assemblage shifts were likely alterations to the physical habitat structure and food availability driven by seabird inputs. Furthermore, deposition of calcium from seabirds may have also contributed to changing the composition of cladoceran communities. Our study provides information on food web shifts associated with seabird-driven eutrophication, which can be compared to future paleoecological studies.

The effects of flow extremes on native and non‐native stream fishes in Puerto Rico

Abstract Globally, freshwater fishes are among the taxa most vulnerable to climate change but are generally understudied in tropical island ecosystems where climate change is predicted to alter the intensity, frequency and duration of extreme flow events. These changes may impact stream ecosystems and native and non‐native biota in complex ways. We compiled an extensive dataset of fish assemblages collected at 119 sites across the Caribbean island of Puerto Rico from 2005 to 2015. We coupled these data with stream flow indices and dam height to understand associations between flow and fish assemblage structure. Sixteen percent of sites contained exclusively non‐native species, 34% contained exclusively native species, and 50% contained native and non‐native species. We built generalised linear models and conducted all subsets model selection to identify extreme flow variables explaining variation in native and non‐native species richness and biomass. We also built models to determine the combined effects of extreme flows and the presence of non‐native species on native species richness and biomass. Extreme flows and dam height were important in explaining variations in native and non‐native species richness and biomass. Model averages showed native biomass decreased by 0.42 kg/ha with a 1‐m increase in dam height, by 0.05 kg/ha with 1 cm/s increase in maximum mean daily high flow and by 3.45 kg/ha with each additional day increase in maximum high flow duration, and increased by 2.06 kg/ha with each additional day increase in mean high flow duration. Model averages predicted that non‐native biomass increased by 1.32 kg/ha with a 1‐m increase in dam height and by 0.01 kg/ha with each additional day increase in mean high flow duration, and decreased by 0.36 kg/ha with each additional day increase in maximum high flow duration. Model averages also predicted an increase in native and non‐native biomass of 0.71 gage and 0.06 kg/ha, respectively, with each additional day increase in maximum low flow duration. The combined effects of non‐native species presence and extreme flows changed the relationship between maximum high and low flow durations and native biomass. Model averages showed that native biomass increased by 1.83 kg/ha with each additional day increase in maximum high flow duration and decreased by 2.52 kg/ha with each additional day increase in maximum low flow duration when non‐native species were present. Native fishes may be able to better cope with longer maximum durations of low flows than expected when non‐native fishes are absent. In mixed fish assemblages, extended maximum durations of high flows may act as a control of non‐native species and dampen their negative effect on native species, but longer maximum durations of low flows may heighten the negative effects of non‐native fishes. Our results are informative for tropical island ecosystems globally and can guide the management and conservation of native fishes, particularly when faced with the dual threats of climate change and non‐native species. Managers may consider increasing efforts to conserve native fishes in Caribbean rivers by maintaining connectivity and habitat complexity while preventing non‐native species introductions.

Cross-boundary effects of human impacts on animal assemblages in the coastal zone

Human impacts on ecosystems often transcend ecosystem boundaries and environmental realms, complicating ecosystem assessment, conservation, and management. Whether and how different impacts affect ecosystems in distinct but adjacent domains remains untested in many settings, and is rarely tested concurrently at the same spatial scales. In this study, we quantified the effects of coastal urbanisation on the structure of terrestrial coastal vertebrate assemblages (including birds, reptiles and mammals using baited trail cameras) and marine surf zone fish assemblages (using baited underwater videography) at 100 sites along 50 km of beach in eastern Australia. Sites occurred along a gradient of intensities of urban land conversion in the hind dunes. While the effects of urbanisation on the species sampled were pervasive across both ecosystems, the area of urbanised land mattered more for the coastal vertebrates observed, while proximity to urbanised land was more important for the surf zone fish observed. Here, fewer individuals and species of coastal vertebrates were found at sites with a greater extent of urbanised land within 5 km. Conversely, fish assemblages were more diverse in the surf zones abutting urban areas and more abundant at sites approximately 150 m from urbanised land. The spatial properties of these landscapes, including proximity to headlands for coastal vertebrates and reefs for fish, modified the effects of urbanisation. Our findings suggest that urbanisation can have ecologically nuanced effects that are detectable across the land-sea boundary, and stress the importance of landscape context when assessing and conserving animal assemblages in and around coastal cities.

Alpha and beta‐diversity and community structure of dung beetle assemblages in an East African protected savannah

AbstractFew studies have examined how dung beetle species composition changes across several mammalian dung types. Species composition and abundance of dung beetles were studied in dung samples of seven African mammals along animal trails and using 14 baited‐pitfall traps in both the park and the buffer zone resulting in a combined data set of 113 samples. Both the number of species (18) and the number of individual dung beetles (600) encountered were low for an area close to the Equator. Few species (2) and herbivores (13) tunnellers (9) dominated the dung beetles community, feeding and guild structure respectively. Alpha diversity was moderate 2.06 (1 < H′ ≤ 3). Beta diversity ranged from low 0.8 (high similarity) to high (zero, no similarity). Dung beetle species composition varied with dung type with the degree of pairwise similarity between two dung types in 19 of the total (21) dung beetle communities comparisons showing low similarity (0.4) to no similarity (zero). The observed discrepancies may be attributed to dung size, composition and consistency as well as to the low number of dung of the different animal species sampled. Furthermore, further research is needed as rarefaction curves suggest that sampling was incomplete.

Common ant species dominate morphospace: unraveling the morphological diversity in the Brazilian Amazon Basin

Rare plant and vertebrate species have been documented to contribute disproportionately to the total morphological structure of species assemblages. These species often possess morphologically extreme traits and occupy the boundaries of morphological space. As rare species are at greater risk of extinction than more widely distributed species, human‐induced disturbances can strongly affect ecosystem functions related to assemblage morphology. Here, we assess to what extent the distributions of ant morphological traits are supported by morphologically extreme species and how they are distributed among habitats in a global biodiversity hotspot, the Brazilian Amazon. We used a morphological database comprising 15 continuous morphological traits and 977 expert‐validated ant species distributed across the Brazilian Amazon. We produced species range estimates using species distribution models or alpha hulls (when few records were available). Next, we conducted a principal components analysis to combine traits into a space with reduced dimensionality (morphospace). Then, we identified morphologically extreme species in this space and quantified their contributions to morphological diversity across different habitat types in the Brazilian Amazon Basin. We identified 114 morphologically extreme ant species across the Amazon ant morphospace. These species also accounted for a large percentage of morphospace filling, exceeding 99% representation in the most disturbed habitats in the Amazon. Our results suggest that a few morphologically extreme species capture most of the variation in ant morphology and, therefore, the spectrum of ecosystem functions performed by ants in the Brazilian Amazon Basin. Further, unlike in many other groups, these extreme morphologies were represented by the set of most common species. These results suggest greater functional redundancy and resilience in Brazilian Amazon ants, but more broadly, they contribute to our understanding of ecological processes that sustain ecosystem functions.

Fish and macroinvertebrates respond differently to seasonal drying in tropical non‐perennial streams

AbstractSurface water drying challenges the persistence of lotic biological assemblages in non‐perennial streams and rivers. However, the effects of natural hydrological disturbances on an assemblage depend on individual species characteristics. In this study, we investigated the structure and association of fish and macroinvertebrate assemblages during two phases in non‐perennial streams (flowing vs. disconnected pools). We sampled fish and macroinvertebrate assemblages in five non‐perennial stream reaches located in the Caatinga (Brazilian semi‐arid region). Fish species were resistant to hydrological dynamics in the streams. On the other hand, some macroinvertebrate taxa from the flowing phase disappeared, and new taxa colonized the disconnected pools. The absence of lotic insects following flow cessation and the colonization of disconnected pools by lentic taxa facilitated macroinvertebrate assemblages persistence in these dynamic streams. Our study showed that fish and macroinvertebrate assemblages respond differently to the same natural flow cessation, which leads us to predict that flow changes will yield different assemblages, depending on the taxa. Thus, it is crucial to consider multi‐assemblage responses to effectively manage and conserve non‐perennial stream ecosystems in a tropical semi‐arid region.

Disentangling the drivers of urban bird diversity in the non-breeding season: A general synthesis.

Current knowledge about the impacts of urbanisation on bird assemblages is based on evidence from studies partly or wholly undertaken in the breeding season. In comparison, the non-breeding season remains little studied, despite the fact that winter conditions at higher latitudes are changing more rapidly than other seasons. During the non-breeding season, cities may attract or retain bird species because they offer milder conditions or better feeding opportunities than surrounding habitats. However, the range of climatic, ecological and anthropogenic mechanisms shaping different facets of urban bird diversity in the non-breeding season are poorly understood. We explored these mechanisms using structural equation modelling to assess how urbanisation affects the taxonomic, phylogenetic and functional diversity of avian assemblages sampled worldwide in the non-breeding season. We found that minimum temperature, elevation, urban area and city age played a critical role in determining taxonomic diversity while a range of factors-including productivity, precipitation, elevation, distance to coasts and rivers, socio-economic (as a proxy of human facilitation) and road density-each contributed to patterns of phylogenetic and functional diversity. The structure and function of urban bird assemblages appear to be predominantly shaped by temperature, productivity and city age, with effects of these factors differing across seasons. Our results underline the importance of considering multiple hypotheses, including seasonal effects, when evaluating the impacts of urbanisation on biodiversity.

Estructura comunitaria de peces, asteroideos y equinoideos en el Farallón de San Ignacio, arrecife situado en la “brecha faunística de Sinaloa”, México

Even though there is extensive research on the rocky reefs in the Gulf of California, some areas still have scarce information, such as the Farallón de San Ignacio, which is well known for its high biodiversity and its location in the biogeographic transition zone known as the "Sinaloa gap." Due to the limited information available for this site, the present study aimed to describe the composition and structure of asteroid and echinoid fish assemblages at the Farallón de San Ignacio. For this purpose, visual surveys were conducted in November 2016 using belt transects of 25 m long by 4 m wide for fish and 25 m long by 2 m wide for invertebrates, to estimate species abundance, richness, diversity, and evenness indices, and to compare them with other rocky reefs located at the same latitude on the western coast of the Gulf of California that were visited the same year. A total of 34 species were recorded, including two asteroids and four echinoids. The most abundant species were the fish Azurina atrilobata, the starfish Phataria unifacialis, and the sea urchin Diadema mexicanum. Despite the Farallón’s isolation, the complexity of its community structure is similar to that of other islands in the Gulf of California, although there were differences in species composition due to the high abundance of herbivorous species at this site.

Variability in zoobenthic blue carbon storage across a southern polar gradient

The seabed of the Antarctic continental shelf hosts most of Antarctica's known species, including taxa considered indicative of vulnerable marine ecosystems (VMEs). Nonetheless, the potential impact of climatic and environmental change, including marine icescape transition, on Antarctic shelf zoobenthos, and their blue carbon-associated function, is still poorly characterised. To help narrow knowledge gaps, four continental shelf study areas, spanning a southern polar gradient, were investigated for zoobenthic (principally epi-faunal) carbon storage (a component of blue carbon), and potential environmental influences, employing a functional group approach. Zoobenthic carbon storage was highest at the two southernmost study areas (with a mean estimate of 41.6 versus 7.2 g C m−2) and, at each study area, increased with morphotaxa richness, overall faunal density, and VME indicator density. Functional group mean carbon content varied with study area, as did each group's percentage contribution to carbon storage and faunal density. Of the environmental variables explored, sea-ice cover and primary production, both likely to be strongly impacted by climate change, featured in variable subsets most highly correlating with assemblage and carbon storage (by functional groups) structures. The study findings can underpin biodiversity- and climate-considerate marine spatial planning and conservation measures in the Southern Ocean.

Spatial structure and potential processes linking fish and benthic communities in a protected reef ecosystem in SE Brazil

Top-down and bottom-up processes can mediate the structuring of biological communities. Several studies have provided separate support for those processes in pelagic and benthic compartments of reef systems but studies focusing on whole-reef processes are less common. Here, we sampled 3 ‘reef compartments’ in the Alcatrazes Archipelago in Southeastern Brazil: benthic cover of colonial organisms, solitary organisms, and reef fish (i.e. pelagic) to identify the groups responsible for spatial community structure among reefs. A dynamic mosaic structure best defines the assemblages of each compartment, with substantial changes observed among sites over 2 consecutive years and at 2 depth strata, separated by a sharp thermocline. Changes in benthic cover of colonial organisms are largely due to the extent of the blooming of Sargassum canopies, algal turfs, and the zoanthid Palythoa caribaeorum. Solitary organisms show a consistent monotonic change in the abundance of sea urchins, ascidians, and snails. Fish assemblage structure differed among reefs; however, we observed that large invertivore fish tended to concentrate in warmer water above the thermocline and small fish of different feeding habits were found in deeper and colder water in all reefs. We observed a potential strong link between the reefscape and solitary organisms, with a negative relationship between the abundance of urchins and the cover of Sargassum spp. suggesting top-down control. A second link is indicated by a positive relationship between low-lying cover composed of articulated turf and P. caribaeorum and larger invertivorous fish, suggesting bottom-up control through the provision of favorable foraging grounds.

Seasonal dynamics and habitat preferences of juvenile fish assemblages in the Wanquan Estuary, South China: Implications for conservation and management

Tropical estuaries encompass diverse habitats, which are crucial for supporting juvenile fish by providing nurseries, refuges, and migration routes. In the present study, we investigated the seasonal and spatial dynamics of juvenile fish assemblages in the Wanquan Estuary, Hainan Island, China, examining variations during the wet and dry seasons across four types of habitats. Our research aimed to test the hypotheses: (1) the wet season supports a greater abundance and species richness of juvenile fish compared to the dry season, and (2) juvenile fish showed varying habitat preferences across seasons. We recorded a total of 3617 individuals belonging to 33 families, 50 genera, and 78 taxa. Our findings revealed significant seasonal fluctuations in the assemblage structure, with peak abundance during the wet season in August, primarily consisting of diadromous species. A notable shift towards marine species was observed in March. Spatially, juvenile fish exhibited significant habitat preferences, with a strong preference for sand substrates for most species. Contrary to common expectations, mangrove fringe habitats were not identified as the primary nursery grounds for juvenile fish. Instead, our study highlights the importance of habitat diversity and connectivity in enhancing nursery functions. Water temperature and salinity were the key drivers influencing the seasonal and temporal patterns of juvenile fish assemblages in the Wanquan River estuary The pronounced temporal dynamics of these assemblages, driven by seasonal environmental alterations affecting water variations and habitat connectivity, were more significant than spatial differences. The findings emphasize the need for focused connectivity of various habitats to support the conservation of diverse fish communities in tropical estuarine ecosystems.