Strong Selective Pressure Research Articles

Fractional factorial experimental design for optimizing volatile fatty acids from anaerobic fermentation of municipal sludge: Microbial community and activity investigation

Volatile fatty acids (VFAs) production from municipal sludge is a promising venture for resource recovery while ensuring wastewater treatment plants' ecological and economic sustainability. This study used a fractional factorial design (FFD) and response surface methodology (RSM) to optimize VFAs production from municipal sludge in semi-continuous flow acid fermenters (AFs) based on four critical parameters (i.e., sludge retention time (SRT), sludge composition, pH, and temperature) interactively and individually. To ascribe the mechanisms to VFAs production dynamics, non-methanogenic microbial activity assays and microbial community composition linked to the VFAs yields were explored. FFD and RSM successfully optimized VFAs production in the AFs, and a second-order polynomial model with an R-squared of 0.83 was derived. Optimal model conditions for VFAs production were 3-days SRT, 45 °C, pH 8.1, and 0.92 sludge composition (VS/TS ratio). Under these conditions, the model predicted a 3.47-fold increase in VFAs production, close to the experimental value of 3.48. AFs at pH of 8.1 and varying temperatures harbored the highest proportion of fermentative bacteria, mainly Clostridia, and lowest community diversity, indicating strong selective pressure for VFAs-producing populations. Furthermore, the microbial activities assays provided quantitative functional information linked to the microbial communities in each AF configuration consistent with VFAs production.

Identification of a signature of evolutionarily conserved stress-induced mutagenesis in cancer.

The clustering of mutations observed in cancer cells is reminiscent of the stress-induced mutagenesis (SIM) response in bacteria. Bacteria deploy SIM when faced with DNA double-strand breaks in the presence of conditions that elicit an SOS response. SIM employs DinB, the evolutionary precursor to human trans-lesion synthesis (TLS) error-prone polymerases, and results in mutations concentrated around DNA double-strand breaks with an abundance that decays with distance. We performed a quantitative study on single nucleotide variant calls for whole-genome sequencing data from 1950 tumors, non-inherited mutations from 129 normal samples, and acquired mutations in 3 cell line models of stress-induced adaptive mutation. We introduce statistical methods to identify mutational clusters, quantify their shapes and tease out the potential mechanism that produced them. Our results show that mutations in both normal and cancer samples are indeed clustered and have shapes indicative of SIM. Clusters in normal samples occur more often in the same genomic location across samples than in cancer suggesting loss of regulation over the mutational process during carcinogenesis. Additionally, the signatures of TLS contribute the most to mutational cluster formation in both patient samples as well as experimental models of SIM. Furthermore, a measure of cluster shape heterogeneity was associated with cancer patient survival with a hazard ratio of 5.744 (Cox Proportional Hazard Regression, 95% CI: 1.824–18.09). Our results support the conclusion that the ancient and evolutionary-conserved adaptive mutation response found in bacteria is a source of genomic instability in cancer. Biological adaptation through SIM might explain the ability of tumors to evolve in the face of strong selective pressures such as treatment and suggests that the conventional ‘hit it hard’ approaches to therapy could prove themselves counterproductive.

Sexual size dimorphism and male reproductive traits vary across populations of a tropical rainforest dung beetle species (Onthophagus babirussa).

Sexual size dimorphism (SSD) arises when natural selection and sexual selection act differently on males and females. Male‐biased SSD is rarer in insects and usually indicates strong sexual selection pressure on male body size in a species. Patterns of SSD can also vary between populations of species that are exposed to different environmental conditions, such as differing resource availability and diversity. Here, we investigate intraspecific variation in SSD as well as relative investment in precopulatory (horn length) and postcopulatory traits (sperm length and testes weight) in a tropical rainforest dung beetle Onthophagus babirussa across Singapore and Peninsular Malaysia. Overall, three out of four populations displayed significant male‐biased SSD, and SSD was greater in populations with smaller overall body size. Average male body size was similar across all populations while female body size was significantly smaller in Singapore, suggesting that the pronounced SSD may also be due to stronger sexual selection on male body size in Singapore populations. All populations showed significant investment in horns as a weapon likely used in male‐male competition, while postcopulatory traits showed no clear scaling relationship with body size, suggesting a higher priority on precopulatory sexual traits in the mating system of this species.

The call of the wild: a challenge to reveal the natural history of birds on the Tibetan plateau

<p indent="0mm">Knowledge on the natural history of organisms is the bedrock upon which ecology and evolutionary biology stand, and contributes to natural conservation, public health and human culture. With an average elevation of more than <sc>4000 m</sc> and a territory of <sc>2500000 km²,</sc> the Tibetan plateau is the highest and largest highland on earth. The extreme environments in the plateau have imposed strong selective pressures on the evolution of organisms’ life histories, leading to the biodiversity hotpots with global conservation concern. Of more than 700 bird species inhabiting the plateau, 90% are unknown with respect to natural history. Without such data, many important scientific and conservative questions cannot be fully understood. Chinese ornithologists are encouraged to full up the knowledge gap.

Extensive diversity and rapid turnover of phage defense repertoires in cheese-associated bacterial communities

BackgroundPhages are key drivers of genomic diversity in bacterial populations as they impose strong selective pressure on the evolution of bacterial defense mechanisms across closely related strains. The pan-immunity model suggests that such diversity is maintained because the effective immune system of a bacterial species is the one distributed across all strains present in the community. However, only few studies have analyzed the distribution of bacterial defense systems at the community-level, mostly focusing on CRISPR and comparing samples from complex environments. Here, we studied 2778 bacterial genomes and 188 metagenomes from cheese-associated communities, which are dominated by a few bacterial taxa and occur in relatively stable environments.ResultsWe corroborate previous laboratory findings that in cheese-associated communities nearly identical strains contain diverse and highly variable arsenals of innate and adaptive (i.e., CRISPR-Cas) immunity systems suggesting rapid turnover. CRISPR spacer abundance correlated with the abundance of matching target sequences across the metagenomes providing evidence that the identified defense repertoires are functional and under selection. While these characteristics align with the pan-immunity model, the detected CRISPR spacers only covered a subset of the phages previously identified in cheese, providing evidence that CRISPR does not enable complete immunity against all phages, and that the innate immune mechanisms may have complementary roles.ConclusionsOur findings show that the evolution of bacterial defense mechanisms is a highly dynamic process and highlight that experimentally tractable, low complexity communities such as those found in cheese, can help to understand ecological and molecular processes underlying phage-defense system relationships. These findings can have implications for the design of robust synthetic communities used in biotechnology and the food industry.DbLYqYwr-FU-DxBRk3MVnLVideo

Quantifying the Selective, Stochastic, and Complementary Drivers of Institutional Evolution in Online Communities.

Institutions and cultures usually evolve in response to environmental incentives. However, sometimes institutional change occurs due to stochastic drivers beyond current fitness, including drift, path dependency, blind imitation, and complementary cooperation in fluctuating environments. Disentangling the selective and stochastic components of social system change enables us to identify the key features of long-term organizational development. Evolutionary approaches provide organizational science with abundant theories to demonstrate organizational evolution by tracking beneficial or harmful features. In this study, focusing on 20,000 Minecraft communities, we measure these drivers empirically using two of the most widely applied evolutionary models: the Price equation and the bet-hedging model. As a result, we find strong selection pressure on administrative and information rules, suggesting that their positive correlation with community fitness is the main reason for their frequency change. We also find that stochastic drivers decrease the average frequency of administrative rules. The result makes sense when viewed in the context of evolutionary bet-hedging. We show through the bet-hedging result that institutional diversity contributes to the growth and stability of rules related to information, communication, and economic behaviors.

Identification and expression analysis of the lipid phosphate phosphatases gene family reveal their involvement in abiotic stress response in kiwifruit.

Lipid phosphate phosphatases (LPPs) are a key enzyme in the production and degradation of phosphatidic acid (PA), which plays an important role in plant growth, development, stress resistance and plant hormone response. Thus far, little is known about the LPP family genes in kiwifruit (Actinidia spp.). According to this study, 7 members in the AcLPP family were identified from the whole genome of kiwifruit, the subcellular localization predictions were mainly on the plasma membrane. Chromosomal localization analysis showed that the AcLPP genes were unevenly distributed on 5 chromosomes, it was determined to have undergone strong purifying selection pressure. There were 5 duplicate gene pairs and all underwent segmental duplication events. The LPP genes of kiwifruit were conserved when compared with other plants, especially in terms of evolutionary relationships, conserved motifs, protein sequences, and gene structures. Cis-regulatory elements mainly included hormone response elements and abiotic response elements. Functional annotation of GO revealed that AcLPP genes were closely related to phosphatase/hydrolase activity, phosphorus metabolism and dephosphorylation. AcLPP genes family were predicted to be targets of miRNA. Transcript level analysis revealed that the AcLPP family played diverse functions in different tissues and during growth, development, and postharvest storage stages. qPCR analysis showed that the members of AcLPP gene family might be regulated by ETH, ABA, GA3, and IAA hormone signals. The family members were regulated by the stress of salt stress, osmotic stress, cold stress, and heat stress. These results would provide a basis and reference for studying the agricultural characteristics of kiwifruit and improving its stress resistance.

Genetic basis of growth reaction to drought stress differs in contrasting high-latitude treeline ecotones of a widespread conifer.

Climate change is increasing the frequency and intensity of drought events in many boreal forests. Trees are sessile organisms with a long generation time, which makes them vulnerable to fast climate change and hinders fast adaptations. Therefore, it is important to know how forests cope with drought stress and to explore the genetic basis of these reactions. We investigated three natural populations of white spruce (Picea glauca) in Alaska, located at one drought-limited and two cold-limited treelines with a paired plot design of one forest and one treeline plot. We obtained individual increment cores from 458 trees and climate data to assess dendrophenotypes, in particular the growth reaction to drought stress. To explore the genetic basis of these dendrophenotypes, we genotyped the individual trees at 3000 single nucleotide polymorphisms in candidate genes and performed genotype-phenotype association analysis using linear mixed models and Bayesian sparse linear mixed models. Growth reaction to drought stress differed in contrasting treeline populations. Therefore, the populations are likely to be unevenly affected by climate change. We identified 40 genes associated with dendrophenotypic traits that differed among the treeline populations. Most genes were identified in the drought-limited site, indicating comparatively strong selection pressure of drought-tolerant phenotypes. Contrasting patterns of drought-associated genes among sampled sites and in comparison to Canadian populations in a previous study suggest that drought adaptation acts on a local scale. Our results highlight genes that are associated with wood traits which in turn are critical for the establishment and persistence of future forests under climate change.

Gut cancer increases the risk of Drosophila being preyed upon by hunting spiders

Predators are thought to prey on individuals that are in poor physical condition, although the evidence supporting this is ambiguous. We tested whether sick individuals were more predated using Drosophila melanogaster flies as manipulable prey. We asked whether hunting spiders, trapped from the wild, would selectively prey upon flies with compromised health (i.e. chronically infected or cancerous) versus healthy flies, under laboratory conditions. Flies chronically infected with the bacterium Providencia rettgeri , a natural Drosophila pathogen, were not selectively preyed upon by jumping spiders. We strengthened and confirmed our finding with another hunting spider species, small wolf spiders. This result supports the hypothesis that chronic infection is associated with reduced symptoms notably to avoid the potentially deadly consequences for pathogens of host predation. We then induced colon cancer in some of the flies and asked whether the presence of cancer led to selective predation; there is little empirical evidence for this, even in vertebrates. As the cancer developed, the incidence of predation by jumping spiders on the afflicted flies increased. We conclude that disease can have different lethal consequences through predation, even in invertebrate species, and that cancer is a factor in selective predation. Our results may explain why early tumours, but not metastasized cancers, are commonly detected in organisms in the wild, as cancer-bearing individuals are rapidly eliminated due to the strong selective pressure against them. • Chronic infection of Drosophila did not significantly affect the risk of predation. • Predation may play a role in selection of symptoms of chronic infections. • Hyperplasia in Drosophila gut did not change predation risk by jumping spiders. • Advanced cancer in Drosophila gut increased predation risk by jumping spiders. • Selective predation may explain why cancer is rarely detected in wild populations.

Trait Analysis in Domestic Rabbits (Oryctolagus cuniculus f. domesticus) Using SNP Markers from Genotyping-by-Sequencing Data

Simple SummaryRabbit breeding is an important branch of agricultural animal breeding; their fur color and weight are desirable traits for artificial breeding. Polymorphism can provide potential molecular markers for studying rabbit traits and improve rabbit breeds with such markers in the future. In this study, single-nucleotide polymorphism markers in genotyping-by-sequencing data were used to analyze rabbit traits. In total, three genes were identified to be associated with fur color and four with weight. The results of this study provide a data base for the research and improvement of rabbit breeding program.The domestic rabbit (Oryctolagus cuniculus f. domesticus) is a very important variety in biomedical research and agricultural animal breeding. Due to the different geographical areas in which rabbit breeds originated, and the long history of domestication/artificial breeding, rabbits have experienced strong selection pressure, which has shaped many traits of most rabbit varieties, such as color and weight. An efficient genome-wide single-nucleotide polymorphism (SNP) detection strategy is genotyping-by-sequencing (GBS), which has been widely used in many organisms. This study attempted to explore bi-allelic SNPs associated with fur color and weight-related traits using GBS in five rabbit breeds. The data consisted of a total 831,035 SNPs in 150 individuals from Californian rabbits (CF), German Zika rabbits (ZK), Qixing rabbits (QX), Sichuan grey rabbits (SG), and Sichuan white rabbits (SW). In addition, these five breeds of rabbits were obviously independent populations, with high genetic differentiation among breeds and low genetic diversity within breeds. A total of 32,144 SNP sites were identified by selective sweep among the different varieties. The genes that carried SNP loci in these selected regions were related to important traits (fur color and weight) and signal pathways, such as the MAPK/ERK signaling pathway and the Hippo signaling pathway. In addition, genes related to fur color and weight were identified, such as ASIPs, MITFs and KITs, ADCY3s, YAPs, FASs, and ACSL5s, and they had more SNP sites. The research offers the foundation for further exploration of molecular genetic markers of SNPs that are related to traits.

Substantial somatic genomic variation and selection for BCOR mutations in human induced pluripotent stem cells

We explored human induced pluripotent stem cells (hiPSCs) derived from different tissues to gain insights into genomic integrity at single-nucleotide resolution. We used genome sequencing data from two large hiPSC repositories involving 696 hiPSCs and daughter subclones. We find ultraviolet light (UV)-related damage in ~72% of skin fibroblast-derived hiPSCs (F-hiPSCs), occasionally resulting in substantial mutagenesis (up to 15 mutations per megabase). We demonstrate remarkable genomic heterogeneity between independent F-hiPSC clones derived during the same round of reprogramming due to oligoclonal fibroblast populations. In contrast, blood-derived hiPSCs (B-hiPSCs) had fewer mutations and no UV damage but a high prevalence of acquired BCOR mutations (26.9% of lines). We reveal strong selection pressure for BCOR mutations in F-hiPSCs and B-hiPSCs and provide evidence that they arise in vitro. Directed differentiation of hiPSCs and RNA sequencing showed that BCOR mutations have functional consequences. Our work strongly suggests that detailed nucleotide-resolution characterization is essential before using hiPSCs.

Evolution of visual system specialization in predatory arthropods.

Under strong selective pressure for survival, image-forming vision set off an ongoing predatory arms race 500 million years ago. Since then, and particularly so in the arthropods, predatory behavior has driven a myriad of eye adaptations that increase visual performance. In this review, we provide examples of how different arthropod predators have achieved improvements in key visual features such as spatial and temporal resolution of their retina. We then describe morphological, neural and behavioral strategies used by animals in this group to gather crucial information about the prey, such as its distance, velocity and size. We also highlight the importance of head and body tracking movements to aid in categorizing the potential prey, and briefly mention the ongoing work on the sensorimotor transformations necessary for target interception.

Exceptional diversity and selection pressure on coronavirus host receptors in bats compared to other mammals.

Pandemics originating from non-human animals highlight the need to understand how natural hosts have evolved in response to emerging human pathogens and which groups may be susceptible to infection and/or potential reservoirs to mitigate public health and conservation concerns. Multiple zoonotic coronaviruses, such as severe acute respiratory syndrome-associated coronavirus (SARS-CoV), SARS-CoV-2 and Middle Eastern respiratory syndrome-associated coronavirus (MERS-CoV), are hypothesized to have evolved in bats. We investigate angiotensin-converting enzyme 2 (ACE2), the host protein bound by SARS-CoV and SARS-CoV-2, and dipeptidyl-peptidase 4 (DPP4 or CD26), the host protein bound by MERS-CoV, in the largest bat datasets to date. Both the ACE2 and DPP4 genes are under strong selection pressure in bats, more so than in other mammals, and in residues that contact viruses. Additionally, mammalian groups vary in their similarity to humans in residues that contact SARS-CoV, SARS-CoV-2 and MERS-CoV, and increased similarity to humans in binding residues is broadly predictive of susceptibility to SARS-CoV-2. This work augments our understanding of the relationship between coronaviruses and mammals, particularly bats, provides taxonomically diverse data for studies of how host proteins are bound by coronaviruses and can inform surveillance, conservation and public health efforts.

Historical and future climate change fosters expansion of Australian harvester termites, Drepanotermes.

Past evolutionary adaptations to Australia's aridification can help us to understand the potential responses of species in the face of global climate change. Here, we focus on the Australian-endemic genus Drepanotermes, also known as Australian harvester termites, which are mainly found in semiarid and arid regions of Australia. We used species delineation, phylogenetic inference, and ancestral state reconstruction to investigate the evolution of mound-building in Drepanotermes and in relation to reconstructed past climatic conditions. Our findings suggest that mound-building evolved several times independently in Drepanotermes, apparently facilitating expansions into tropical and mesic regions of Australia. The phylogenetic signal of bioclimatic variables, especially limiting environmental factors (e.g., precipitation of the warmest quarter), suggests that the climate exerts a strong selective pressure. Finally, we used environmental niche modeling to predict the present and future habitat suitability for eight Drepanotermes species. Abiotic factors such as annual temperature contributed disproportionately to calibrations, while the inclusion of biotic factors such as predators and vegetation cover improved ecological niche models in some species. A comparison between present and future habitat suitability under two different emission scenarios revealed continued suitability of current ranges as well as substantial habitat gains for most studied species. Human-mediated climate change occurs more quickly than these termites can disperse into newly suitable habitat; however, their role in stabilizing arid ecosystems may allow them to mitigate effects on some other organisms at a local level.

An expanding cityscape and its multi-scale effects on lizard distribution.

Urbanization results in complex and variable changes to environmental conditions, which translate to shifts in selection pressures for organisms. Size of a city as well as the intensity and extent of urbanization can synergistically influence how organisms are impacted. However, less is known about how landscape heterogeneity, rate of land-use change, and scale of urbanization affect species persistence. We evaluate the ways in which urbanization changes the environment and examine how some of these environmental factors influence the presence of the lizard Psammophilus dorsalis (Peninsular rock agama), in Bengaluru, India. Variability in environmental factors across the study area was characterised by measures of habitat composition and diversity, habitat connectivity, rate of habitat change, predation pressure, land surface temperature (LST) and artificial light at night (ALAN), that were derived from remotely sensed and citizen science data. Most of these factors showed high variance across two measures of urbanization: distance from city center and proportion of built-up area. Habitat diversity and ALAN were the only two factors that changed predictably and in a non-linear way, with distance from the city center and proportion of built-up area. We then used a multi-scale approach to examine the relative importance of some these environmental factors at the landscape scale, as well as additional factors at the microhabitat-scale, in predicting the presence and relative abundance of P. dorsalis respectively. At the landscape scale, LST, which is positively correlated with proportion of cropland, predicted lizard presence; whereas at the microhabitat scale, P. dorsalis was more likely to be found in sites with higher proportions of rocks. Overall, we demonstrate that urbanization can result in environmental predictors that do not vary linearly across the urbanization gradient. For the iconic rock agama, many of these environmental factors do not seem to be strong selection pressures that influence their distribution in the expanding cityscape. Whether this urban utilizer can continue to persist with increasing anthropogenic development is uncertain. To better understand drivers of species persistence, we emphasize the importance of quantifying urbanization across multiple axes, considering environmental factors that are relevant to species at different spatial and temporal scales.

Characterization of Histone H3 Gene Family Reveals That GmHH3-3 is Associated With Higher Seed Weight in Glycine max.

The main function of histone protein is to provide support to the structure of chromosomes. It helps in binding a long thread of DNA into a more condensed shape to fit into the nucleus. From histone variants, histone H3 (HH3) plays a crucial role in plant growth and development. Characterization of histones has not been reported in Glycine max till now. The objective of this study was to characterize the HH3 gene family for molecular breeding of G. max. In this study, 17 HH3 members in G. max were identified by performing local BLASTp using HH3 members from Arabidopsis as a query. Phylogenetic analysis classified HH3 genes in seven clades. Sequence logo analysis among Arabidopsis thaliana, Oryza sativa, and Glycine max showed a higher level of similarity in amino acids. Furthermore, conserveness of G. max HH3 genes was also confirmed by Gene Structure Display. Ten paralogous gene pairs were identified in GmHH3 genes in the Glycine max genome by conducting collinearity analysis. G. max HH3 genes have experienced strong purifying selection pressure, with limited functional divergence originating from the segmental and whole-genome duplication, as evidenced by the Ka/Ks ratio. The KASP marker was developed for GmHH3-3 gene. Genotyping was performed on 46 G. max genotypes. This differentiation was based upon the presence of either GmHH3-3-C or GmHH3-3-T allele in the CDS region. The results showed that G. max accessions containing the GmHH3-3-T allele at respective locus showed higher thousand seed weight than that of those accessions that contain the GmHH3-3-C allele. This research provides the basic information to further decipher the function of HH3 in soybean.

Knockdown of UDP-N-acetylglucosamine pyrophosphorylase and chitin synthase A increases the insecticidal efficiency of Lufenuron to Spodoptera exigua

Spodoptera exigua (Lepidoptera, Noctuidae) has been responsible for causing considerable and widespread agricultural losses worldwide. Owing to strong selective pressure, S. exigua showed increased resistance to Lufenuron (LUF). Consequently, RNA interference (RNAi)-based insecticides had more benefits than chemical insecticides. Therefore, to enhance the insecticidal activity of LUF to S. exigua, in the present study, we aimed to elucidate the impact of double-stranded RNAs (dsRNAs) on S. exigua larval susceptibility to LUF. First, the transcriptome of S. exigua was sequenced following the treatment with LUF. By comparing the upregulated and downregulated GO enrichment, chitin binding and chitin metabolic processes were the significantly enriched pathways. According to transcriptome sequencing, 8 genes associated with chitin biosynthesis, 8 chitin degradation genes, and 17 cuticle protein genes were obtained. UDP-N-acetylglucosamine pyrophosphorylase (UAP) and Chitin synthase A (CHSA) showed significantly downregulated expression after treatment with different sublethal doses of LUF. Downregulation of UAP increased mortality from 31.97% to 47.91% when the larvae were exposed to LUF. A significant increase in the mortality of S. exigua from 30.63% to 50.19% was observed following LUF administration after dsCHSA. In addition, the expression analysis of genes associated with chitin biosynthesis was significantly changed after LUF treatment, dsRNAs-RNAi, and their combination (LUF-dsRNAs). Significant differences were observed in the chitin content between the control group at 72 h after treatments. Results of the present study can help further elucidate the understanding of the combined effects of RNAi and LUF on S. exigua. Additionally, this research provides a suitable foundation for future studies with the aim to develop an efficient method of delivery for large-scale pest control in the fields.

Insights into the Eucyclops graeteri species complex (Copepoda, Cyclopidae) — the case of sulphidic groundwaters of Mangalia (Southern Dobrogea, Romania)

Members of the Eucyclops graeteri species complex are widely distributed in European groundwaters and share some morphocharacters such as: a long aesthetasc on the ninth segment of female antennula, short or very reduced spinule row ("serra") on furcal rami, lateral hairiness of 5th thoracic somite strongly reduced, and few or no hairs on the distal margin of the intercoxal sclerite of 4th legs pair. a long aesthetasc on the ninth segment of female antennula, short or very reduced spinule row ("serra") on furcal rami, lateral hairiness of 5th thoracic somite strongly reduced, and few or no hairs on the distal margin of the intercoxal sclerite of 4th legs pair. All these characters are subject to strong selective pressure in the underground environment; therefore, the study of molecular markers is needed to better define the taxonomy and phylogeny of this species group. The Southern Dobrogea region in Romania conceals dark, isolated, and sulfide-rich aquifers, accessible through artificial wells, springs, and the Movile Cave. The chemoautotrophically-based Movile Cave hosts a member of the E. graeteri complex, described several years ago as a subspecies (E. graeteri scythicus Plesa, 1989). The morphological and molecular analyses performed on specimens of this species complex collected from Southern Dobrogea revealed new records for E. graeteri scythicus both in sulfidic and non-sulfidic artificial wells dug near the cave as well as a species putatively new to science collected in three sulfidic wells from Mangalia. Mitochondrial markers allocated the Movile Cave population in a distinct clade within the genus Eucyclops, Eucyclops serrulatus s.l. being the closest taxon. The putative new species belongs to a different clade within the subfamily Eucyclopinae, raising doubts on the monophyly of this species complex. Furthermore, our investigations revealed the occurrence of ectosymbiont sulfur-oxidizing Thiothrix bacteria associated with E. graeteri scythicus suggesting that this putative symbiosis could allow this taxon to better cope with sulphidic-rich environments. These unique sulfidic groundwater environments therefore provide an interesting model system in which to study the taxonomy of copepods and their adaptation to very harsh environmental conditions.

Spatial-temporal Variations of Discarded Ichthyofauna from a Small-scale Shrimp Fishery: Influence of Ecological Patterns in a Yucatan Coastal Lagoon

Sauz-Sánchez, J.J.; López-Rocha, J.A.; Arceo-Carranza, D., and Poot-López, G.R., 2022. Spatial-temporal variations of discarded ichthyofauna from a small-scale shrimp fishery: Influence of ecological patterns in a Yucatan coastal lagoon. Journal of Coastal Research, 38(4), 860–869. Coconut Creek (Florida), ISSN 0749-0208. Spatial-temporal variations of discarded catches associated with a shrimp-small scale fishery from the Celestun lagoon, Yucatan, Mexico, were analyzed throughout seasonal and spatial (inner, middle, and external estuarine zones) physicochemical gradients to observe the influence of ecological patterns on discarded ichthyofauna. Differences in abundance, biomass, composition, and physicochemical variables between seasons and among zones were tested using a two-way ANOVA and an analysis of dissimilarity, respectively. The best subset of environmental variables (BIOENV) function was used to observe the influence of physicochemical gradients on the discarded fish community. A total of 1611 individuals belonging to 36 species of discarded fish were identified, with mostly an abundance of juveniles occurring for the following species: Achirus lineatus, Archosargus probatocephalus, Cynoscion nebulosus, Eucinostomus gula, Floridichthys polyommus, Lagodon rhomboides, Lucania parva, Mayaheros urophthalmus, and Sphoeroides testudineus. Hence, the data shows a strong selection pressure on juvenile fish. Significant differences in abundance, species composition, and physicochemical variables were observed between seasons and zones. Results from the BIOENV indicated that temperature, salinity, and pH gradients, generated by underground freshwater discharges, influenced the spatial-temporal variations of discarded ichthyofauna from the Celestun lagoon. Furthermore, reproductive seasons, and capabilities to tolerate salinity concentrations also spatially structures a discarded fish community. The results showed the ecological complexity in which fish discards occur, in addition, suggesting measures to reduce discards by including ecological and social aspects to maintain the sustainability of this artisanal shrimp fishery.

Male–male associations in spotted bowerbirds (Ptilonorhynchus maculatus) exhibit attributes of courtship coalitions

Despite strong selective pressures inherent in competition for mates, in species with non-resource-based mating systems males commonly engage in non-agonistic interactions with same-sex visitors at display arenas. Bowerbirds perform courtship dances on elaborate display structures — known as bowers — that are built and defended by one resident male. Several reports have suggested that bower owners tolerate the presence of specific male visitors at their display arenas, referred to here as ‘subordinates’. Subordinate males may learn the skills required for successful sexual signalling via prolonged social interactions at adults’ arenas, but little is known about whether courtship proficiency changes with experience and/or whether subordinates actively contribute to enhancing the resident male’s mating success. In this study, we investigated male-male associations in wild spotted bowerbirds (Ptilonorhynchus maculatus). We first sought to determine whether courtship behaviour differs based on bower ownership status. We then examined whether social interactions between bower owners and subordinate males may qualify as courtship coalitions. Our analysis of courtship postural components did not reveal differences in timing or relative occurrence of postural components between subordinate males and bower owners, whereas we found evidence that male-male associations in spotted bowerbirds may provide an example of rudimentary courtship coalitions. In particular, higher subordinate attendance is associated with lower destruction rates by neighbouring rivals and with overall higher mating success, and male pairs are stable in subsequent years. This study provides novel information about social dynamics among male bowerbirds, and further insights into the evolution of coalitionary behaviour in male displays.Significance statementSame-sex associations between established males and subordinate visitors on display arenas are common in birds, yet poorly understood. Using video recordings from a population of wild spotted bowerbirds, Ptilonorhynchus maculatus, we performed a quantitative analysis on motor courtship components across males, and on their social interactions on display arenas to investigate the nature of male–male partnerships. Our results showed that motor courtship performance in subordinate visitors is not suggestive of an early ontogenetic stage, as previously speculated. Moreover, though bower ‘owners’ and subordinate males do not coordinate their behaviour during courtship or bower building, male–male partnerships may qualify as a rudimentary or incipient form of courtship coalitions. Subordinate males are tolerated at bowers, the magnitude of subordinate attendance correlates with owner males’ mating success, and repeated interactions between individuals reveal consistent partner associations.