Plant Stress Physiology Research Articles

Transcriptome Profiling to Identify Genes Involved in Mesosulfuron-Methyl Resistance in Alopecurus aequalis.

Non-target-site resistance (NTSR) to herbicides is a worldwide concern for weed control. However, as the dominant NTSR mechanism in weeds, metabolic resistance is not yet well-characterized at the genetic level. For this study, we have identified a shortawn foxtail (Alopecurus aequalis Sobol.) population displaying both TSR and NTSR to mesosulfuron-methyl and fenoxaprop-P-ethyl, yet the molecular basis for this NTSR remains unclear. To investigate the mechanisms of metabolic resistance, an RNA-Seq transcriptome analysis was used to find candidate genes that may confer metabolic resistance to the herbicide mesosulfuron-methyl in this plant population. The RNA-Seq libraries generated 831,846,736 clean reads. The de novo transcriptome assembly yielded 95,479 unigenes (averaging 944 bp in length) that were assigned putative annotations. Among these, a total of 29,889 unigenes were assigned to 67 GO terms that contained three main categories, and 14,246 unigenes assigned to 32 predicted KEGG metabolic pathways. Global gene expression was measured using the reads generated from the untreated control (CK), water-only control (WCK), and mesosulfuron-methyl treatment (T) of R and susceptible (S). Contigs that showed expression differences between mesosulfuron-methyl-treated R and S biotypes, and between mesosulfuron-methyl-treated, water-treated and untreated R plants were selected for further quantitative real-time PCR (qRT-PCR) validation analyses. Seventeen contigs were consistently highly expressed in the resistant A. aequalis plants, including four cytochrome P450 monooxygenase (CytP450) genes, two glutathione S-transferase (GST) genes, two glucosyltransferase (GT) genes, two ATP-binding cassette (ABC) transporter genes, and seven additional contigs with functional annotations related to oxidation, hydrolysis, and plant stress physiology. These 17 contigs could serve as major candidate genes for contributing to metabolic mesosulfuron-methyl resistance; hence they deserve further functional study. This is the first large-scale transcriptome-sequencing study to identify NTSR genes in A. aequalis that uses the Illumina platform. This work demonstrates that NTSR is likely driven by the differences in the expression patterns of a set of genes. The assembled transcriptome data presented here provide a valuable resource for A. aequalis biology, and should facilitate the study of herbicide resistance at the molecular level in this and other weed species.

Landscaping in times of climate change: considerations for water conservation

This work presents an overview of landscaping in times of climate change, proposing some considerations for water conservation. Our main objective is to increase awareness of how good design practices and the use of drought tolerant plants can contribute to a more sustainable and enjoyable environment. First we discuss the water conservation aspect of LEED certification followed by the most popular options for xeriscaping in the United States. Then, we present some basic plant stress physiology concepts such as flowering, photoperiodism and stress, that can aid on designing and maintenance of a more durable and low water input landscape.

A Proteome Translocation Response to Complex Desert Stress Environments in Perennial Phragmites Sympatric Ecotypes with Contrasting Water Availability.

After a long-term adaptation to desert environment, the perennial aquatic plant Phragmites communis has evolved a desert-dune ecotype. The desert-dune ecotype (DR) of Phragmites communis showed significant differences in water activity and protein distribution compared to its sympatric swamp ecotype (SR). Many proteins that were located in the soluble fraction of SR translocated to the insoluble fraction of DR, suggesting that membrane-associated proteins were greatly reinforced in DR. The unknown phenomenon in plant stress physiology was defined as a proteome translocation response. Quantitative 2D-DIGE technology highlighted these ‘bound’ proteins in DR. Fifty-eight kinds of proteins were identified as candidates of the translocated proteome in Phragmites. The majority were chloroplast proteins. Unexpectedly, Rubisco was the most abundant protein sequestered by DR. Rubisco activase, various chaperons and 2-cysteine peroxiredoxin were major components in the translocation response. Conformational change was assumed to be the main reason for the Rubisco translocation due to no primary sequence difference between DR and SR. The addition of reductant in extraction process partially reversed the translocation response, implying that intracellular redox status plays a role in the translocation response of the proteome. The finding emphasizes the realistic significance of the membrane-association of biomolecule for plant long-term adaptation to complex stress conditions.

\u03b3-Aminobutyric Acid Imparts Partial Protection from Salt Stress Injury to Maize Seedlings by Improving Photosynthesis and Upregulating Osmoprotectants and Antioxidants

γ-Aminobutyric acid (GABA) has high physiological activity in plant stress physiology. This study showed that the application of exogenous GABA by root drenching to moderately (MS, 150 mM salt concentration) and severely salt-stressed (SS, 300 mM salt concentration) plants significantly increased endogenous GABA concentration and improved maize seedling growth but decreased glutamate decarboxylase (GAD) activity compared with non-treated ones. Exogenous GABA alleviated damage to membranes, increased in proline and soluble sugar content in leaves, and reduced water loss. After the application of GABA, maize seedling leaves suffered less oxidative damage in terms of superoxide anion (O2·−) and malondialdehyde (MDA) content. GABA-treated MS and SS maize seedlings showed increased enzymatic antioxidant activity compared with that of untreated controls, and GABA-treated MS maize seedlings had a greater increase in enzymatic antioxidant activity than SS maize seedlings. Salt stress severely damaged cell function and inhibited photosynthesis, especially in SS maize seedlings. Exogenous GABA application could reduce the accumulation of harmful substances, help maintain cell morphology, and improve the function of cells during salt stress. These effects could reduce the damage to the photosynthetic system from salt stress and improve photosynthesis and chlorophyll fluorescence parameters. GABA enhanced the salt tolerance of maize seedlings.

Chemical Priming of Plants Against Multiple Abiotic Stresses: Mission Possible?

Crop plants are subjected to multiple abiotic stresses during their lifespan that greatly reduce productivity and threaten global food security. Recent research suggests that plants can be primed by chemical compounds to better tolerate different abiotic stresses. Chemical priming is a promising field in plant stress physiology and crop stress management. We review here promising chemical agents such as sodium nitroprusside, hydrogen peroxide, sodium hydrosulfide, melatonin, and polyamines that can potentially confer enhanced tolerance when plants are exposed to multiple abiotic stresses. The challenges and opportunities of chemical priming are addressed, with the aim to boost future research towards effective application in crop stress management.

MONITORING WATER STRESS IN ORNAMENTALS: SIGNAL DETECTION AND INTERPRETATION

Understanding plant responses to water deficiency has become globally one of the most challenging tasks in crop management, plant stress physiology and breeding technologies. It has stimulated the demand of growers, breeders and researchers of ornamental plants for efficient and reliable methods to detect and quantify water stress before the plants will be damaged irreversibly. This paper summarizes our experience and investigations using gas exchange technology, ultrasonic acoustic emission (UAE) technique and thermal imaging, as applied in horticulture research. In projects testing drought tolerance of bedding plants or monitoring water status of cut flowers during the post harvest life it could be concluded: 1) gas exchange and UAE measurements under stress conditions provide especially robust data for cultivar screening, 2) thermal imaging proves best for application in irrigation scheduling regarding the easy handling and good reliability of interpretations and 3) UAE profiles in short-term stress tests appear as meaningful indicators for prediction of cut flowers’ longevity.

On the reconstruction of plant photosynthetic and stress physiology across the Triassic–Jurassic boundary

The Triassic-Jurassic boundary (TJB) coincides with major disruption to the carbon cycle and global warming as the Central Atlantic Magmatic Province developed. This resulted in both marine and terrestrial extinctions, with terrestrial plants thought to experience thermal stress as global temperatures and atmospheric CO2 levels rose. As plant compression fossils typically only preserve external morphological features, it has not been possible to reconstruct plant paleophysiology in order to elucidate the mechanisms underlying plant stress and extinction. Here we present a new approach allowing us to infer the photosynthetic performance and stress physiology of fossil plants, applied to fossil Ginkgoales across the TJB. We use correlations between the adaxial epidermal cell density of extant Ginkgo biloba and photosynthetic and protective stress physiology to infer the paleophysiological condition of Late Triassic-Early Jurassic-aged plants from Astartekloft, East Greenland. The density of fossil leaf adaxial epidermal cells indicates that photosynthetic performance of Ginkgoales became increasingly impaired towards the latter stages of the Triassic, before improving into the Early Jurassic. This is consistent with d13C isotope values, paleo-[CO2] levels, and global mean temperatures, suggesting that photosynthetic performance was influenced by the prevailing environmental conditions during the TJB event. Dissipation of absorbed energy as heat would also have risen towards the boundary as plant stress increased, in order to protect the photosynthetic physiology. The increase in dissipation of energy as heat, associated with a reduction in convective heat loss due to reduced transpiration rates, would have exacerbated plant thermal stress at the TJB, thus contributing to sudden biodiversity loss and ecological change.

Assessing the Applicability of Singlet Oxygen Photosensitizers in Leaf Studies

Singlet oxygen ((1) O2 ) is of special interest in plant stress physiology. Studies focused on internal, chlorophyll-mediated production are often complemented with the use of artificial (1) O2 photosensitizers. Here, we report a comparative study on the effects of Rose Bengal (RB), Methylene Violet (MVI), Neutral Red (NR) and Indigo Carmine (IC). These were infiltrated into tobacco leaves at concentrations generating the same fluxes of (1) O2 in solution. Following green light-induced (1) O2 production from these dyes, leaf photosynthesis was characterized by Photosystem (PS) II and PSI electron transport and oxidative damage was monitored as degradation of D1, a PSII core protein. Cellular localizations were identified on the basis of the dyes' fluorescence using confocal laser scanning microscopy. We found that RB and NR were both localized in chloroplasts but the latter had very little effect, probably due to its pH-dependent photosensitizing. Both RB and intracellular, nonplastid MVI decreased PSII electron transport, but the effect of RB was stronger than that of MVI and only RB was capable of damaging the D1 protein. Intercellularly localized IC had no significant effect. Our results also suggest caution when using RB as photosensitizer because it affects PSII electron transport.

The PYL4 A194T Mutant Uncovers a Key Role of PYR1-LIKE4/PROTEIN PHOSPHATASE 2CA Interaction for Abscisic Acid Signaling and Plant Drought Resistance

Because abscisic acid (ABA) is recognized as the critical hormonal regulator of plant stress physiology, elucidating its signaling pathway has raised promise for application in agriculture, for instance through genetic engineering of ABA receptors. PYRABACTIN RESISTANCE1/PYR1-LIKE (PYL)/REGULATORY COMPONENTS OF ABA RECEPTORS ABA receptors interact with high affinity and inhibit clade A phosphatases type-2C (PP2Cs) in an ABA-dependent manner. We generated an allele library composed of 10,000 mutant clones of Arabidopsis (Arabidopsis thaliana) PYL4 and selected mutations that promoted ABA-independent interaction with PP2CA/ABA-HYPERSENSITIVE3. In vitro protein-protein interaction assays and size exclusion chromatography confirmed that PYL4(A194T) was able to form stable complexes with PP2CA in the absence of ABA, in contrast to PYL4. This interaction did not lead to significant inhibition of PP2CA in the absence of ABA; however, it improved ABA-dependent inhibition of PP2CA. As a result, 35S:PYL4(A194T) plants showed enhanced sensitivity to ABA-mediated inhibition of germination and seedling establishment compared with 35S:PYL4 plants. Additionally, at basal endogenous ABA levels, whole-rosette gas exchange measurements revealed reduced stomatal conductance and enhanced water use efficiency compared with nontransformed or 35S:PYL4 plants and partial up-regulation of two ABA-responsive genes. Finally, 35S:PYL4(A194T) plants showed enhanced drought and dehydration resistance compared with nontransformed or 35S:PYL4 plants. Thus, we describe a novel approach to enhance plant drought resistance through allele library generation and engineering of a PYL4 mutation that enhances interaction with PP2CA.

Nitrosative responses in citrus plants exposed to six abiotic stress conditions

Nitrosative status has emerged as a key component in plant response to abiotic stress; however, knowledge on its regulation by different environmental conditions remains unclear. The current study focused on nitrosative responses in citrus plants exposed to various abiotic stresses, including continuous light, continuous dark, heat, cold, drought and salinity. Morphological observations and physiological analysis showed that abiotic stress treatments were sensed by citrus plants. Furthermore, it was revealed that nitrosative networks are activated by environmental stress factors in citrus leaves as evidenced by increased nitrite (NO) content along with the release of NO and superoxide anion (O₂⁻) in the vascular tissues. The expression of genes potentially involved in NO production, such as NR, AOX, NADHox, NADHde, PAO and DAO, was affected by the abiotic stress treatments demonstrating that NO-derived nitrosative responses could be regulated by various pathways. In addition, S-nitrosoglutathione reductase (GSNOR) and nitrate reductase (NR) gene expression and enzymatic activity displayed significant changes in response to adverse environmental conditions, particularly cold stress. Peroxynitrite (ONOO⁻) scavenging ability of citrus plants was elicited by continuous light, dark or drought but was suppressed by salinity. In contrast, nitration levels were elevated by salinity and suppressed by continuous light or dark. Finally, S-nitrosylation patterns were enhanced by heat, cold or drought but were suppressed by dark or salinity. These results suggest that the nitrosative response of citrus plants is differentially regulated depending on the stress type and underscore the importance of nitrosative status in plant stress physiology.

PASmiR: a literature-curated database for miRNA molecular regulation in plant response to abiotic stress

BackgroundOver 200 published studies of more than 30 plant species have reported a role for miRNAs in regulating responses to abiotic stresses. However, data from these individual reports has not been collected into a single database. The lack of a curated database of stress-related miRNAs limits research in this field, and thus a cohesive database system should necessarily be constructed for data deposit and further application.DescriptionPASmiR, a literature-curated and web-accessible database, was developed to provide detailed, searchable descriptions of miRNA molecular regulation in different plant abiotic stresses. PASmiR currently includes data from ~200 published studies, representing 1038 regulatory relationships between 682 miRNAs and 35 abiotic stresses in 33 plant species. PASmiR’s interface allows users to retrieve miRNA-stress regulatory entries by keyword search using plant species, abiotic stress, and miRNA identifier. Each entry upon keyword query contains detailed regulation information for a specific miRNA, including species name, miRNA identifier, stress name, miRNA expression pattern, detection method for miRNA expression, a reference literature, and target gene(s) of the miRNA extracted from the corresponding reference or miRBase. Users can also contribute novel regulatory entries by using a web-based submission page. The PASmiR database is freely accessible from the two URLs of http://hi.ustc.edu.cn:8080/PASmiR, and http://pcsb.ahau.edu.cn:8080/PASmiR.ConclusionThe PASmiR database provides a solid platform for collection, standardization, and searching of miRNA-abiotic stress regulation data in plants. As such this database will be a comprehensive repository for miRNA regulatory mechanisms involved in plant response to abiotic stresses for the plant stress physiology community.

Plant stress physiology

Plant stress physiology

Magnesium mobility in soils as a challenge for soil and plant analysis, magnesium fertilization and root uptake under adverse growth conditions

BackgroundDue to its unique chemistry magnesium (Mg) is subject to various cycling processes in agricultural ecosystems. This high mobility of Mg needs to be considered for crop nutrition in sustainable agricultural systems. The Mg mobility in soils and plants and its consequences for crop nutrition are understood, but recent findings in crop Mg uptake, translocation and physiology particularly under adverse growth conditions give new insights into the importance of Mg in crop production.ScopeThe aim of this review is to combine the knowledge on the origin and mobility of Mg in soils with the role of Mg in plant stress physiology and recent evidence on the principles of crop Mg uptake. The question is addressed whether the progress made in Mg research, particularly on the role of Mg in stress physiology, makes a revision of the development of Mg fertilization recommendations necessary.ConclusionsNew insights into Mg uptake and utilization but particularly into the role of Mg in increasing crop tolerance to various stresses indicate changes in the crop Mg demand under adverse growth conditions. Future work should incorporate these findings in optimization of site-specific balanced fertilization programs particularly under stress conditions.

Identification of Abiotic Stress Responsive Genes from Indian High Altitude Lepidium latifolium L.

The high altitude regions owing to their unique climatic and geographic differentiation have specific agro-technological requirements, different from the ones employed elsewhere for vegetable production. The major high altitude abiotic stresses includes cold, frost, drought, salinity, low oxygen, high wind velocity and intense UV radiations etc. that negatively influence the survival, biomass production and yields of vegetable crops 1 up to 70 per cent. Since tolerance to these stresses is multigenic and quantitative in nature, a massive challenge exists to understand the key molecular mechanisms for advanced selective breeding purposes. A lot of efforts made to identify the suitable varieties/hybrids and cultivation practices, the complexity of trait of tolerance to abiotic stresses remains the major limitation in overcoming these barriers for better agricultural productivity of high altitude regions. Also, the mechanisms by which plants perceive environmental signals and further their transmission to cellular machinery to activate adaptive responses is of critical importance for the development of rational breeding and transgenic strategies to impart abiotic stress tolerance in vegetable crops 2 . Conventional breeding methods have met with limited success in improving the abiotic stress tolerance of important vegetables while biotechnology offers new and highly precise strategies that can be used to develop transgenics crop plants with improved tolerance to abiotic stress that would certainly enhance the productivity of vegetable crops at high altitude regions 3 . Although, recent advancements in genomics, transcriptomics and regulomics have enriched our understanding on stress physiology of plants, and it is hoped that this will contribute to the development of tolerant genotypes for such regions. Timely modulation of specific sets of genes is critical for

Rôle des micro-organismes bénéfiques pour aider les plantes à acquérir une tolérance aux stresses environnementaux

Due to their sessile nature, plants have always been confronted to various abiotic and biotic stresses in their immediate environment. As a consequence, the survival of plants depended on their ability to adjust rapidly their physiology, development and growth to escape or mitigate the impacts of stress. All plants are known to perceive and respond to stress signals such as drought, heat, salinity, attacks by herbivores and pathogens. Some biochemical processes are common to all plant stress responses including the production of certain stress proteins and metabolites, as well as the modification of the reactive oxygen species (ROS) metabolism. Although there has been extensive research in the plant stress response field, it is not yet known which factors are responsible for conferring to some plant species the capacity to colonize extreme habitats. Although considerable progress has been made in our understanding of plant stress physiology, the contribution of the plant-associated microbial community in the soil, commonly called the rhizosphere, has only recently received enhanced attention. Recent studies showed that some plant species in natural habitats require microbial associations for stress tolerance and survival. Since plants have colonized land, they have evolved mechanisms to respond to changing environmental conditions and settle in extreme habitats. Although many plants lack the adaptive capability to adapt to stress conditions, the ability of a variety of plants to adapt to stress conditions appears to depend on the association with microbes, raising a number of questions: can all plants improve stress tolerance when associated with their appropriate microbial partners? Did we miss identifying the right partners for a given plant species or variety? What distinguishes the microbes and plants that are adapted to extreme environmental conditions from those living in temperate zones? Answers to these questions are likely to revolutionize plant biology and could lead to new methods for a sustainable agriculture.

Korean plant proteomics: pioneers in plant stress physiology

Abstract Plant proteomics is the large-scale studies of proteins, particularly on their structures and functions, governed by the physiological metabolism of plant cells. With the development of techniques and strategies in pro-teomics, proteomics approach is moving forward in systems biology handling sophisticated components of major signaling and biochemical pathways in plants responding to their environment. In Korea, pioneers in plant proteomics are trying to catch up with global trends in plant proteomics; these researchers are not only improving existing techniques in protein extraction but also developing new techniques in proteomics context. In the hot field of abiotic and biotic stress proteomics, 29 and 9 out of 74 papers have been published during the review period from 2005 to 2010, respectively. This present review article provides an overview on the output of Korean plant proteomers while paying special attention to both abiotic and biotic stress proteomics. Keywords South Korea, Plant, Proteomics, Abiotic, Biotic, Stress Physiology

Poplar under drought: Comparison of leaf and cambial proteomic responses

The forest ecosystem is of particular importance from an economic and ecological perspective. However, the stress physiology of trees, perennial and woody plants, is far from being fully understood. For that purpose, poplar plants were exposed to drought; the plants exhibited commonly reported drought stress traits in the different plant tissues. Leafy rooted cuttings of poplar were investigated through a proteomic approach in order to compare the water constraint response of two plant tissues, namely leaf and cambium. Sampling was realized during the drought period at 2 time points with increased drought intensity and 7 days after rewatering. Our data show that there is a difference in the moment of response to the water constraint between the two tissues, cambium being affected later than leaves. In leaves, drought induced a decrease in rubisco content, and an increase in the abundance of light harvesting complex proteins as well as changes in membrane-related proteins. In the cambial tissue, the salient proteome pattern change was the decrease of multiple proteins identified as bark storage proteins. After rewatering, almost all changes in cambial proteome disappeared whereas a significant number of leaf proteins appeared to be differentially regulated only during the recovery from drought.

Novel crop science to improve yield and resource use efficiency in water-limited agriculture

SUMMARYGlobally, agriculture accounts for 0·80–0·90 of all freshwater used by humans and, in many crop production systems, this water use is unsustainable. The current paper focuses on the potential exploitation of novel drought stress biology in both crop improvement programmes and via changed crop management practices. The aim is to deliver ‘more crop per drop’. In order to respond to the challenge of feeding a world population of seven billion and growing, it is concluded that an interdisciplinary approach is needed involving new genetic opportunities and plant breeding. It is also shown how crop management can exploit the drought stress physiology of plants to deliver improved water productivity without sacrificing crop yield.

Construction of ihpRNA Expression Vector of MsLEA3-1 from Medicago sativa L. and Genetic Transformation in Tobacco

Late embriogenesis abundant (LEA) protein is one of the hot topics in plant stress physiology. In this study, an RNAi expression vector harboring MsLEA3-1 gene fragment from alfalfa ( Medicago sativa L.) was constructed. Two pairs of specific primers with different enzyme sites were designed based on the sequence of MsLEA3-1 (GenBank accession number EU665182). With the template of PMD-LEA plasmid constructed, positive-sense strand and antisense strand were obtained, which were separately inserted into the expression vector pART27. A hairpin structure in the RNAi vector pART-F-R was confirmed by the digestion of restriction enzymes. pART-F-R was transformed into tobacco via Agrobacterium-mediated transformation system, and 16 transgenic plants were obtained after PCR validation.

Extracellular ATP and nitric oxide signaling pathways regulate redox-dependent responses associated to root hair growth in etiolated Arabidopsis seedlings

Extracellular ATP (eATP) and nitric oxide (NO) have emerged as crucial players in plant development, stress responses and cell viability. Glutathione (GSH) is an abundant reducing agent with proposed roles in plant growth, development and stress physiology. In a recent publication, we demonstrated that eATP and NO restore hypocotyl elongation of etiolated Arabidopsis seedlings treated with GSH. Here it is reported that exogenous ATP also restore root hair growth suggesting a role for ATP and NO in the regulation of redox balance associated to specific processes of plant morphogenesis. A tentative model integrating redox-, eATP- and NO- signaling pathways during root hair growth in Arabidopsis seedlings is presented.