Stress Conditions In Plants Research Articles

Genome-Wide Identification of Wheat USP Gene Family and Functional Dissection of TaUSP85 Involved in Heat Tolerance

A collection of conserved proteins known as universal stress protein (USP) is present in a wide range of species, including plants, fungi, bacteria, and animals. USPs are named for their ability to respond to a variety of stress conditions, such as heat stroke, osmotic stress, nutrient limitation, and exposure to toxins or antibiotics. While the USP response to different stress conditions in plants has been reported, little is known about the USP family in wheat (Triticum aestivum L.). In wheat, we identified 88 USP genes distributed across 21 chromosomes classified into four subfamilies. Phylogenetic tree and synteny analysis across multiple species revealed a highly conserved evolution of the USP family between monocots and dicots. Based on comparative analysis of protein domains, gene structure and conserved motifs, TaUSPs showed significant differences among the four subfamilies. Furthermore, expression pattern analysis of TaUSPs showed significant differences among various tissues and under different abiotic stress conditions. We further conducted transformation experiments with the TaUSP85 gene, which significantly enhanced yeast thermotolerance. Silencing of TaUSP85 through VIGS experiments in wheat resulted in significant wilting, decreased chlorophyll content, and increased MDA accumulation compared to control plants. The silenced plant lines had much more ROS accumulation than the control group, as determined by the findings of DAB and NBT staining. The interaction proteins TaUSP1 and TaUSP11 of TaUSP85 were screened by yeast two-hybrid and their interaction relationship was further verified by LCI. Overall, our findings enhance the comprehension of the USP gene family in wheat and provide a valuable resource for further investigation of these genes in wheat and related cereal crops.

Short-term reoxygenation is not enough for the recovery of soybean plants exposed to saline waterlogging

The ability of plants to recover after stressful events is crucial for resuming growth and development and is a key trait when studying stress tolerance. However, there is a lack of information on the physiological responses and the time required to restore homeostasis after the stress experience. This study aimed to (i) enhance understanding of soybean photosynthesis performance during saline waterlogging and (ii) investigate the effects of this combined stress during the reoxygenation and recovery period. Soybean plants (cultivar PELBR10-6049 RR) were subjected to waterlogging, NaCl, or hypoxia + NaCl for 3 and 6 days. Afterward, plants were drained and allowed to recover for an additional two (short-term) and seven days (long-term). Compared to plants exposed to single stress, the combined hypoxia + NaCl treatment resulted in a lower net CO2 assimilation rate, ФPSII, and levels of photosynthetic pigments during the waterlogging period. Furthermore, hypoxia + NaCl increased foliar electrolyte leakage during waterlogging. In response to short-term reoxygenation, these negative effects were amplified, while prolonged reoxygenation resulted in a slight increase in biomass accumulation. In conclusion, full recovery was not achieved under any condition during the reoxygenation periods tested. Notably, the brief reoxygenation phase imposed greater stress than the initial stress conditions for plants facing combined stress. Although extended recovery increased biomass accumulation, it remained lower in plants previously subjected to saline waterlogging.

Elevated proline and melatonin alter the methylation pattern in the promoter of their biosynthesis genes in rice

Salt stress upregulates osmoprotectants proline and melatonin in plants, and their exogenous application under salt stress can protect them from stress. While melatonin-induced plant epigenetic reprogramming is known in plants, such a mechanism is yet to be identified in the case of proline. The studies conducted so far used proline and melatonin along with one or more stress factors to look into their stress-alleviating effects. We investigated the impact of externally applied proline and melatonin on the methylation of promoter sequences of proline and melatonin biosynthesis genes in 14-day-old rice plants using a combination of biochemical, bioinformatics, and molecular techniques. Our findings demonstrate that exogenously applied proline and melatonin elevate endogenous levels of these compounds in rice, mimicking stress conditions in plants, as the biochemical assays corroborated the activation of antioxidant systems, particularly ascorbate peroxidase (APX) and catalase (CAT). Bioinformatics analysis unveiled multiple stress-responsive transcription factor binding sites on gene promoters associated with proline and melatonin biosynthesis pathways. Restriction analysis using the isoschizomer pair MspI/HpaII revealed distinct cytosine methylations at the restriction sites on the promoters analyzed in plants treated with proline and melatonin compared to the control. Differential methylation identified in the promoter sequences were matching with the biosynthesis of proline and melatonin and also the antioxidant enzyme levels. These observations are consistent with previous transcriptome data of proline and melatonin biosynthesis genes, providing insights into underlying regulatory mechanisms of proline and melatonin biosynthesis, their role in epigenome control during abiotic stress, and the evolution of various stress-tolerant varieties.

Diversity and Composition of Posidonia oceanica-Associated Bacterial and Fungal Communities: Effect of Boat-Induced Mechanical Stress in the Villefranche-sur-Mer Bay (France)

The anchoring and mooring of boats mechanically damage Posidonia oceanica plants; however, no information is available on the effect of this kind of damage on the plant holobiont, i.e., on the associated bacterial and fungal communities. Indeed, bacterial communities are known to change under different plant stress conditions but the dynamics of seagrass-associated fungi remain largely unexplored. We used DNA metabarcoding to profile the bacterial and fungal colonizers of two nearby P. oceanica patches in the Villefranche-sur-Mer bay (France) differing by the amount of exposure to mechanical stress due to boat transit and anchoring. Bacterial communities showed a significant reduction in diversity with an increase in Vibrio sp. in the rhizome and root samples from the impacted site, where the accumulation of dead organic material favors opportunistic heterotrophs. Conversely, fungal communities showed increased diversity in the leaf samples from the impacted site, where a reduction in the dominant P. oceanica host-specific mutualistic endosymbiont, Posidoniomyces atricolor, was found. This change was probably due to the opening up of new colonizable niches for several fungal species. Although this study represents a preliminary assessment of the effect of mechanical stresses on P. oceanica-associated microbial communities, it further supports their putative use as a seagrass descriptor.

Enhancing salinity stress tolerance in corn salad (Valerianella locusta L.) through melatonin or salicylic acid-functionalized chitosan seed priming: A smart delivery approach

Soil salinity represents a significant environmental stressor that impairs crop production and yield. A wide range of treatments have been used to reduce the effects of salinity in plants. Among the treatments used, functionalized nanoparticles (NPs) have shown great results. In light of recently demonstrated beneficial effects of chitosan-melatonin nanoparticles (CTS-Mel NPs) and chitosan-salicylic acid nanoparticles (CTS-SA NPs) in mitigating the deleterious consequences of major stress factors and boosting secondary metabolite biosynthesis, the current study aimed to investigate their potential as seed priming coatings to enhance plant performance under both control and salinity stress conditions. For this purpose, CTS (0.1% w/v), Mel (50 µM), SA (0.5 mM), CTS-Mel NPs and CTS-SA NPs were applied as seed priming agents on corn salad (Valerianella locusta) seeds, and subsequently key morphophysiological and biochemical properties were assayed under salinity conditions (0, 30 and 60 mM NaCl). Accordingly, salinity stress caused significant reduction in fresh and dry weights (FW and DW) of leaves, chl a, total chl, SPAD and enhancement in content of proline, phenolics, MDA, as well as protein content, and activities of SOD and CAT antioxidant enzymes. Concerning the phenolic compounds analyzed, salinity stress did not affect the dominant phenolic constituents with the exception of naringine. Regarding the protective effects of the various priming treatments, the adverse effects of salinity stress were ameliorated with the application of most of the applied treatments, and with CTS-Mel NPs in particular, by enhancing biomass, pigments, total phenols, protein, SOD and CAT antioxidant enzymatic activities, as well as the content of some dominant constituents of phenolic profile. CTS-Mel NPs enhanced chlorogenic acid, naringine, o-coumaric acid and catechin hydrate under both control and salinity conditions. Overall, CTS-Mel NPs outperformed CTS-SA NPs as a seed priming coating and could potentially be widely introduced as an innovative, sustainable approach to mitigate the effects of salinity and other abiotic stress conditions in crop plants.

Long Non-Coding RNAs Responsive to Temperature Stress Conditions in Tea Plants

Long Non-Coding RNAs Responsive to Temperature Stress Conditions in Tea Plants

IRE1 is implicated in protein synthesis regulation under ER stress conditions in plants

The unfolded protein response (UPR) is a crucial cellular mechanism for maintaining protein folding homeostasis during endoplasmic reticulum (ER) stress. In this study, the role of IRE1, a key component of the UPR, was investigated in protein translation regulation under ER stress conditions in Arabidopsis. We discovered that the loss of IRE1A and IRE1B leads to diminished protein translation, indicating a significant role for IRE1 in this process. However, this regulation was not solely dependent on the interaction with bZIP60, a key transcription factor in the UPR. Interestingly, while chemical chaperones TUDCA and PBA effectively alleviated the translation inhibition observed in ire1a ire1b mutants, this effect was more pronounced than the mitigation observed from suppressing GCN2 expression or introducing a non-phosphorylatable eIF2α variant. Additionally, the kinase and ribonuclease activities of IRE1B were demonstrated to be crucial for plant adaptation and protein synthesis regulation under ER stress conditions. Overall, this study not only highlights the complex regulatory mechanisms of IRE1 in plant ER stress responses but also provides insights into its multifaceted roles in protein translation regulation.

Expression of the alfalfa gene MsMDHAR in Arabidopsis thaliana increases water stress tolerance.

The ascorbate-glutathione pathway plays an essential role in the physiology of vascular plants, particularly in their response to environmental stresses. This pathway is responsible for regulating the cellular redox state, which is critical for maintaining cell function and survival under adverse conditions. To study the involvement of the alfalfa monodehydroascorbate reductase (MsMDHAR) in water stress processes, Arabidopsis thaliana plants constitutively expressing the sequence encoding MsMDHAR were developed. Transgenic events with low and high MsMDHAR expression and ascorbate levels were selected for further analysis of drought and waterlogging tolerance. Under water stress, Arabidopsis transgenic plants generated higher biomass, produced more seeds, and had larger roots than wild type ones. This higher tolerance was associated with increased production of waxes and chlorophyll a at the basal level, greater stomatal opening and stability in regulating the relative water content and reduced H2O2 accumulation under stress conditions in transgenic plants. Overall, these results show that MsMDHAR is involved in plant tolerance to abiotic stresses. The data presented here also emphasises the potential of the MsMDHAR enzyme as a plant breeding tool to improve water stress tolerance.

Changes in growth, essential oil composition and biochemical traits of peppermint in response to coapplication of zinc and methyl jasmonate in soilless culture

Zinc (Zn), a micronutrient, is a source of energy for essential oil (EO) biosynthesis. Methyl jasmonate (MeJA) is a plant growth regulator that has favorable effects on EO quality and quantity. The main objective of this study was to evaluate the interaction effect of Zn and MeJA on the phytochemical traits and EO compositions of peppermint cultivated under soilless conditions. Zn omission and the highest Zn concentration (0.1 mgL−1), which are stress conditions for plants, increased phytochemical traits as well as EO content, and 1 mM MeJA was more suitable for increasing these parameters. The major classes of peppermint EO components were oxygenated monoterpenes, sesquiterpene hydrocarbons, and monoterpene hydrocarbons. The major constituents included menthol, menthone, menthofuran, and 1,8-cineole. Elicitation of peppermint with MeJA at different Zn levels modified the EO composition. The highest menthol content (50.1%) was observed in the 1 mM MeJA and 0.025 mgL−1 Zn treatment groups. In conclusion, this study indicated that Zn and MeJA could be appropriate compounds for changing phytochemical compounds, antioxidant activity, and EO composition.

Crosstalk between long non-coding RNAs and miRNAs regulates transferase activities in response to salt stress in Pistachio (Pistacia vera L.)

Long non-coding RNA (lncRNA) molecules are important regulators of a broad spectrum of biological processes, including adaptation to diverse stresses in plants. However, how plant lncRNAs function during salt stress conditions is largely unknown. In our study, we identified 48 conserved mature Pistacia vera L. (P. vera) miRNAs among pistachio miRNA precursors and used RNA sequencing data to predict and validate the interaction relationship between lncRNAs and miRNAs. We indicated that the regulatory networks of pve-miRNA-lncRNA-mRNAs were more complex in the salt-tolerant (Ghazvini) compared to the salt-sensitive (Sarakhs) pistachio cultivar under NaCl treatment. We also found that 7 and 8 salt-responsive lncRNAs play a role as competing endogenous target mimics (eTMs) for 7 pve-miRNA families in Ghazvini (mir164, mir169, mir397, and mir827) and Sarakhs (mir156, mir159, mir169, and mir482), respectively. The GO-term enrichment analysis showed that protein-coding target genes of pve-miRNAs that regulated with target mimic relationship mainly enriched in transferase activity include: 7-deoxyloganetin glucosyltransferase, Arginine N-methyltransferase, Glutathione transferase, Flavonol sulfotransferase, and Beta-glucuronosyltransferase. Their activity regulates alkaloids and polysulfated flavonols biosynthesis, sequesters sodium, improves antioxidant capacity and controls epigenetic elements in Ghazvini under salt treatment. In Sarakhs, the analysis of GO-term enrichment in pve-miRNAs protein-coding target genes of lncRNA-related mimic relationship enriched in response to wounding, cell death, and jasmonic acid biosynthetic process. Compared to Sarakhs, Ghazvini had a more effective ceRNA network for regulating transferase enzymes and specific transcription factors including MYB, WRKY, and ABR1 in response to salt stress, which led to more salt tolerance in the Ghazvini cultivar. The present study provides new information about the complex lncRNA-miRNA-mRNA regulatory networks in response to plant stress conditions in pistachio. Furthermore, our findings can be used for different breeding programs and the introduction of salt-tolerant pistachio rootstocks.

Effects of nitrogen deficiency and drought stresses on miRNA expressions in Arabidopsis thaliana

MicroRNAs are now known to have an important role in regulating gene expression of eukaryotic organisms. miRNA research in plants gained importance after the discovery that several stress factors alter certain miRNA expressions, which subsequently regulate their target gene expressions and affect development and growth of plants. In this study, two of the widely studied abiotic stress conditions for plants, nitrogen deficiency and drought were used individually and as a combined stress treatment on Arabidopsis thaliana callus tissues to observe the change of expressions in certain miRNAs, when multiple stressors are encountered. Combined stress strongly inhibited callus growth compared to other conditions, while strongly altering certain miRNA expressions. Compared to control, in 7-day stress treated callus, miR165a-3p,b, miR319a,b, miR396b-5p, miR399d and miR827 showed significant downregulation for all stress treatments, while 7-day N deficiency caused miR167 upregulation. Stress treatments for 7 days mostly downregulated miR167c-5p, miR319c, miR399a, miR399e expressions except for the N deficient samples. After 14 days of stress, miR165a-3p,b, miR396a-5p, miR399b, miR399d were downregulated. During 14-day drought and combined stress, miR399a and miR396b-5p expressions were upregulated, respectively. The differences observed in this study between stress responses of 7 and 14-day-long treatments are believed to be valuable to further elucidate the associated molecular mechanisms of miRNAs, determination and validation of miRNA targets, and how plants respond to stress conditions via various genetic regulations.

An overview on Azelaic Acid: Biosynthesis, signalling and the action under stress conditions in plants

Plants are exposed to various biotic and abiotic stress factors throughout their lives. For this reason, they have developed some defense mechanisms. They can induce systemic acquired resistance (SAR), which provides long-lasting protection against diverse pathogen attacks. In recent years, several chemical inducers (salicylic acid, glyceraldehyde-3-phosphate, azelaic acid, pipecolic acid, and dehydroabietic acid) have been determined to play roles in this mechanism. The transfer of these signal molecules from infected tissue to non-infected tissues through phloem provides potent defence communication. Azelaic acid is a well-known molecule that triggers salicylic acid accumulation under biotic stress as a priming factor to induce SAR, although little is known about its role under abiotic stress. Here, this review aims to call attention to the effects of AzA under abiotic stress conditions as well as biosynthesis, transport and signalling.

Exogenous glycine betaine alleviates water-deficit stress in Indian pennywort (Centella asiatica) under greenhouse conditions.

Centella asiatica (Indian pennywort) is a green leafy vegetable containing centelloside' (triterpenoid), a key phytochemical component in traditional medicine. Being a glycophytic species, they exhibit decline in growth performance and yield traits when subjected to water-deficit (WD) conditions. Glycine betaine (GB) is a low molecular-weight organic metabolite that plays a crucial role in abiotic stress conditions in higher plants. The objective of this study was to investigate the potential of GB in alleviating water-deficit stress (in terms of morphological and physiological responses) in two different genotypes of Indian pennywort, "Nakhon Pathom" (NP; high centelloside-yielding genotype) and "Pathum Thani" (PT; low centelloside-yielding genotype). The genotypes of Indian pennywort were propagated by stolon cutting and transplanted into plastic bags containing 2kg of garden soil. At the flower-initiation stage (30days after transplantation), uniform plant material was treated exogenously with 0 (control), 25, and 50mMGB at 100mL per plant (one-time foliar spray) and then divided into two groups, 1) well watered (WW; irrigated daily with 400mL fresh water; 98% field capacity) and 2) water deficit (WD; withheld water for 14days; 72% field capacity). Foliar application of GB (25mM) significantly improved leaf osmotic potential in NP under WD conditions via osmotic adjustment by free proline and fructose. Differences in leaf temperature (Tleaf) between WD and WW in NP were maximized (+ 1.93°C) and the gap of Tleaf was reduced in the case of 25-50mMGB application. Similarly, crop water stress index (CWSI) in NP and PT plants under WD condition was significantly increased by 1.95- and 1.86-fold over the control, respectively; however, it was significantly decreased by exogenous GB application. Increasing Tleaf and CWSI in drought-stressed plants was closely related to stomatal closure, leading to reduced gas exchange parameters, i.e., stomatal conductance (gs), transpiration rate (E), net photosynthetic rate (Pn), and intercellular CO2 concentration (Ci), and consequently decreased plant biomass and total centelloside yield. Overall physiological, morphological, and secondary metabolite traits were enhanced in NP under WD conditions using 25mMGB exogenous application compared with the control. The study highlights the significance of GB in Indian pennywort production under limited water irrigation (water deficit) with higher vegetable yield and phytochemical stabilization.

γ-aminobutyric acid (GABA) strengthened nutrient accumulation, defense metabolism, growth and yield traits against salt and endoplasmic reticulum stress conditions in wheat plants

γ-aminobutyric acid (GABA) strengthened nutrient accumulation, defense metabolism, growth and yield traits against salt and endoplasmic reticulum stress conditions in wheat plants

Genetic variability, correlation and path analysis of yield and yield contributing characters in wheat (Triticum aestivum L.) under normal and terminal heat stress condition

Genetic variability and characters association studies play a pivotal role in enhancing selection efficiency under stress condition in plants. Therefore, the study was aimed at assessing the impact of terminal heat stress on various morpho-physiological traits and their association in wheat under control and terminal heat stress condition. The experiment was conducted using thirty-five wheat genotypes in a Randomized Complete Block design (RCBD) plots on three different sowing dates to induce terminal heat stress. A range of 11 morpho-physiological parameters were assessed. All of the traits showed significant variations under studied conditions. Estimates of the genotypic and phenotypic coefficients of variation (GCV and PCV) showed that PCV was higher than GCV indicating large environmental influence on the expression of the traits under study. High GCV and PCV were observed in grain per plant and yield per plant in both normal and heat stress conditions. Chlorophyll content, grain per plant and yield per plant showed highest heritability with high genetic advance (GA) under both normal and terminal heat stress condition. According to the results of the path co-efficient analysis, grain per plant had a strong positive connection with grain yield and plant height and days to 50% flowering had a negative correlation with grain yield per plant under both normal and stress condition. Canopy temperature has direct negative effect on yield in stress condition. The identified traits can be used as effective selection criteria under terminal heat stress condition to develop high yielding heat tolerant wheat variety.

Predictive analysis of effects of water stress on strawberry seedlings using fluorescent image channel components.

To investigate the effect of water stress on strawberry seedlings, a chlorophyll-fluorescence-image-acquisition system was developed. Strawberry seedlings of uniform growth were selected for grouped water-stress incubation experiments; the collected chlorophyll-fluorescence images of leaves were converted to red-green-blue (RGB), hue-saturation-value (HSV), and hue-saturation-intensity (HSI) color spaces and analyzed for water and chlorophyll contents measured at the same time for 14 consecutive days. The results indicate that the analysis and prediction of plant stress conditions can be effectively conducted using the channel components of the color-space model and the channel component ratios, which provide a reference for promoting agricultural development.

Diurnal greenhouse gas emissions and substrate temperatures from blue-green roofs in north-eastern Italy during a dry-hot summer season

Covering building rooftops with vegetation [Green roofs (GRs)] holds promise for lowering building temperatures, reducing stormwater runoff, and providing other ecosystem services, but it is unclear how this will impact greenhouse gas (GHG) emissions. The latter may also be influenced by vegetation type, substrate depth, and irrigation regime and we sought to test this by comparing daytime GHG emissions (i.e., CH4, CO2, and N2O) and daily substrate temperatures in 48 GR microcosms in North-eastern Italy during a dry-hot summer season (June to September). Four vegetation types (Sedum mixture, cold season grasses, warm season grasses, or wildflowers), two substrate depths (8 cm or 14 cm), and two irrigation levels (1 or 2 mm d−1) were evaluated, for a total of 16 treatments with 3 replicates. We found that vegetation type had a significant effect on temperature [average temp. of 24.8 °C (Sedum) vs 25.5 °C (warm season grasses)] and CH4, CO2, and N2O emissions. While all vegetation types had net CO2 emissions (median values from 147 to 671 mg m−2 h−1) and net N2O uptake (median values from -0.06 to -0.28 mg m−2 h−1), CH4 flux had net negative values (capture) only in microcosms with wildflowers (-0.07 mg m−2 h−1), whereas other treatments had a median CH4 emissions of 0.09 mg m−2 h−1. Substrate depth significantly affected CO2 and N2O fluxes with deeper substrate leading to higher CO2 emission (+ 60.7%) and greater N2O uptake (+ 30.8%). Irrigation level only significantly influenced N2O fluxes with 2 mm irrigation resulting in higher fluxes (-0.20 mg m−2 h−1) than 1 mm irrigation (-0.09 mg m−2 h−1). Our study suggests that under heat induced plant-stress conditions, GRs can improve N2O and CH4 capture but might increase the emissions of CO2 fixed by plants in the previous years in the substrate and that vegetation type and substrate depth can significantly alter emissions and are thus important design parameters.

Colchicine-Induced Polyploidy in Leguminous Crops Enhances Morpho-Physiological Characteristics for Drought Stress Tolerance.

Legumes play a significant role in the alleviation of food insecurity, maintaining soil fertility, and achieving sustainable crop production under adverse environmental conditions. The increased demand in legume production contemplates that attention on the genetic improvement of these crops through various means such as genetic engineering and mutation breeding should take a centre stage in global agriculture. Therefore, this paper provides a succinct analysis of the currently available literature on morphological and physiological traits in polyploidised leguminous plants to counter the adverse effects of drought stress. The effects of colchicine on various morphological and physiological traits of polyploidised legumes compared to their diploid counterparts were examined. Numerous reports revealed variations in these traits, such as improved root and shoot growth, plant biomass, chloroplastidic content, protein, RNA, and DNA. The differences observed were also associated with the strong relationship between plant ploidy induction and colchicine application. Furthermore, the analysis indicated that polyploidisation remains dose-dependent and may be achievable within a shorter space of time as this antimitotic chemical interferes with chromosome separations in somatic plant cells. The efficiency of this process also depends on the advancement of treatment conditions (in vitro, in vivo, or ex vitro) and the successful regeneration of polyploidised plants for adaptation under drought stress conditions. As such, the improvement in metabolite profile and other essential growth characteristics serves as a clear indication that induced polyploidy needs to be further explored to confer resilience to environmental stress and improve crop yield under drought stress conditions in leguminous plants.

The emerging role of epitranscriptome in shaping stress responses in plants.

RNA modifications and editing changes constitute 'epitranscriptome' and are crucial in regulating the development and stress response in plants. Exploration of the epitranscriptome and associated machinery would facilitate the engineering of stress tolerance in crops. RNA editing and modifications post-transcriptionally decorate almost all classes of cellular RNAs, including tRNAs, rRNAs, snRNAs, lncRNAs and mRNAs, with more than 170 known modifications, among which m6A, Ψ, m5C, 8-OHG and C-to-U editing are the most abundant. Together, these modifications constitute the "epitranscriptome", and contribute to changes in several RNA attributes, thus providing an additional structural and functional diversification to the "cellular messages" and adding another layer of gene regulation in organisms, including plants. Numerous evidences suggest that RNA modifications have a widespread impact on plant development as well as in regulating the response of plants to abiotic and biotic stresses. High-throughput sequencing studies demonstrate that the landscapes of m6A, m5C, Am, Cm, C-to-U, U-to-G, and A-to-I editing are remarkably dynamic during stress conditions in plants. GO analysis of transcripts enriched in Ψ, m6A and m5C modifications have identified bonafide components of stress regulatory pathways. Furthermore, significant alterations in the expression pattern of genes encoding writers, readers, and erasers of certain modifications have been documented when plants are grown in challenging environments. Notably, manipulating the expression levels of a few components of RNA editing machinery markedly influenced the stress tolerance in plants. We provide updated information on the current understanding on the contribution of RNA modifications in shaping the stress responses in plants. Unraveling of the epitranscriptome has opened new avenues for designing crops with enhanced productivity and stress resilience in view of global climate change.

Genome-Wide Identification, Characterization and Expression Analysis of Plant Nuclear Factor (NF-Y) Gene Family Transcription Factors in Saccharum spp.

Plant nuclear factor (NF-Y) is a transcriptional activating factor composed of three subfamilies: NF-YA, NF-YB, and NF-YC. These transcriptional factors are reported to function as activators, suppressors, and regulators under different developmental and stress conditions in plants. However, there is a lack of systematic research on the NF-Y gene subfamily in sugarcane. In this study, 51 NF-Y genes (ShNF-Y), composed of 9 NF-YA, 18 NF-YB, and 24 NF-YC genes, were identified in sugarcane (Saccharum spp.). Chromosomal distribution analysis of ShNF-Ys in a Saccharum hybrid located the NF-Y genes on all 10 chromosomes. Multiple sequence alignment (MSA) of ShNF-Y proteins revealed conservation of core functional domains. Sixteen orthologous gene pairs were identified between sugarcane and sorghum. Phylogenetic analysis of NF-Y subunits of sugarcane, sorghum, and Arabidopsis showed that ShNF-YA subunits were equidistant while ShNF-YB and ShNF-YC subunits clustered distinctly, forming closely related and divergent groups. Expression profiling under drought treatment showed that NF-Y gene members were involved in drought tolerance in a Saccharum hybrid and its drought-tolerant wild relative, Erianthus arundinaceus. ShNF-YA5 and ShNF-YB2 genes had significantly higher expression in the root and leaf tissues of both plant species. Similarly, ShNF-YC9 had elevated expression in the leaf and root of E. arundinaceus and in the leaf of a Saccharum hybrid. These results provide valuable genetic resources for further sugarcane crop improvement programs.