Development Of Storage Organs Research Articles

Cytokinin signaling promotes root secondary growth and bud formation in Panax ginseng

BackgroundPanax ginseng, one of the valuable perennial medicinal plants, stores numerous pharmacological substrates in its storage roots. Given its perennial growth habit, organ regeneration occurs each year, and cambium stem cell activity is necessary for secondary growth and storage root formation. Cytokinin (CK) is a phytohormone involved in the maintenance of meristematic cells for the development of storage organs; however, its physiological role in storage-root secondary growth remains unknown. MethodsExogenous CK was repeatedly applied to P. ginseng, and morphological and histological changes were observed. RNA-seq analysis was used to elucidate the transcriptional network of CK that regulates P. ginseng growth and development. The HISTIDINE KINASE 3 (PgHK3) and RESPONSE REGULATOR 2 (PgRR2) genes were cloned in P. ginseng and functionally analyzed in Arabidopsis as a two-component system involved in CK signaling. ResultsPhenotypic and histological analyses showed that CK increased cambium activity and dormant axillary bud formation in P. ginseng, thus promoting storage-root secondary growth and bud formation. The evolutionarily conserved two-component signaling pathways in P. ginseng were sufficient to restore CK signaling in the Arabidopsis ahk2/3 double mutant and rescue its growth defects. Finally, RNA-seq analysis of CK-treated P. ginseng roots revealed that plant-type cell wall biogenesis-related genes are tightly connected with mitotic cell division, cytokinesis, and auxin signaling to regulate CK-mediated P. ginseng development. ConclusionOverall, we identified the CK signaling-related two-component systems and their physiological role in P. ginseng. This scientific information has the potential to significantly improve the field-cultivation and biotechnology-based breeding of ginseng.

Transcriptomic analysis of Chinese yam (Dioscorea polystachya Turcz.) variants indicates brassinosteroid involvement in tuber development.

Dioscorea is an important but underutilized genus of flowering plants that grows predominantly in tropical and subtropical regions. Several species, known as yam, develop large underground tubers and aerial bulbils that are used as food. The Chinese yam (D. polystachya Turcz.) is one of the few Dioscorea species that grows well in temperate regions and has been proposed as a climate-resilient crop to enhance food security in Europe. However, the fragile, club-like tubers are unsuitable for mechanical harvesting, which is facilitated by shorter and thicker storage organs. Brassinosteroids (BRs) play a key role in plant cell division, cell elongation and proliferation, as well as in the gravitropic response. We collected RNA-Seq data from the head, middle and tip of two tuber shape variants: F60 (long, thin) and F2000 (short, thick). Comparative transcriptome analysis of F60 vs. F2000 revealed 30,229 differentially expressed genes (DEGs), 1,393 of which were differentially expressed in the growing tip. Several DEGs are involved in steroid/BR biosynthesis or signaling, or may be regulated by BRs. The quantification of endogenous BRs revealed higher levels of castasterone (CS), 28-norCS, 28-homoCS and brassinolide in F2000 compared to F60 tubers. The highest BR levels were detected in the growing tip, and CS was the most abundant (439.6 ± 196.41 pmol/g in F2000 and 365.6 ± 112.78 pmol/g in F60). Exogenous 24-epi-brassinolide (epi-BL) treatment (20 nM) in an aeroponic system significantly increased the width-to-length ratio (0.045 ± 0.002) compared to the mock-treated plants (0.03 ± 0.002) after 7 weeks, indicating that exogenous epi-BL produces shorter and thicker tubers. In this study we demonstrate the role of BRs in D. polystachya tuber shape, providing insight into the role of plant hormones in yam storage organ development. We found that BRs can influence tuber shape in Chinese yam by regulating the expression of genes involved cell expansion. Our data can help to improve the efficiency of Chinese yam cultivation, which could provide an alternative food source and thus contribute to future food security in Europe.

Evolutionary Conservation and Transcriptome Analyses Attribute Perenniality and Flowering to Day-Length Responsive Genes in Bulbous Barley (Hordeum bulbosum).

Rapid population growth and dramatic climatic turnovers are challenging global crop production. These challenges are spurring plant breeders to enhance adaptation and sustainability of major crops. One intriguing approach is to turn annual systems into perennial ones, yet long-term classical breeding efforts to induce perenniality have achieved limited success. Here, we report the results of our investigation of the genetic basis of bulb formation in the nonmodel organism Hordeum bulbosum, a perennial species closely related to barley. To identify candidate genes that regulate bulb formation in H. bulbosum, we applied two complementary approaches. First, we explored the evolutionary conservation of expressed genes among annual Poaceae species. Next, we assembled a reference transcriptome for H. bulbosum and conducted a differential expression (DE) analysis before and after stimulating bulb initiation. Low conservation was identified in genes related to perenniality in H. bulbosum compared with other species, including bulb development and sugar accumulation genes. We also inspected these genes using a DE analysis, which enabled identification of additional genes responsible for bulb initiation and flowering regulation. We propose a molecular model for the regulation of bulb formation involving storage organ development and starch biosynthesis genes. The high conservation observed along a major part of the pathway between H. bulbosum and barley suggests a potential for the application of biotechnological techniques to accelerate breeding toward perenniality in barley.

Integrative analysis based on transcriptome revealed the relation of auxin to turnip hypocotyl-tuber formation

Turnip (Brassica campestris L. ssp. rapifera Matag syn. B. rapa L.) is characterized by bulbous hypocotyl-tuber, which is an important agronomic trait of the Brassica plants, but the molecular mechanism underlying the development of turnip hypocotyl-tuber has rarely been explored. Contrary to turnip, pak-choi (B. campestris L. ssp. chinensis Makino syn. B. rapa ssp. chinensis) is characterized by small and long hypocotyl. Based on the difference in morphological and anatomical characteristics of hypocotyl between turnip and pak-choi at different developmental stages, integrative analysis was performed in this study. Comparative transcriptomic analysis demonstrated that the changes of expression patterns of genes related to plant hormones especially auxin in hypocotyl were closely related to turnip hypocotyl enlargement at the early stages (8 and 32 days after sowing). The immunolocalization of auxin during early hypocotyl development stages also showed auxin signal differences in secondary xylem of hypocotyl between the two subspecies, and further 1-Naphthaleneacetic acid (NAA) treatments confirmed the effect of auxin in turnip hypocotyl-tuber formation. Our study provided valuable information for further exploration of the role of auxin underlying turnip hypocotyl enlargement, enabling a more comprehensive understanding of plant storage organ development.

Tuber and Tuberous Root Development.

Root and tuber crops have been an important part of human nutrition since the early days of humanity, providing us with essential carbohydrates, proteins, and vitamins. Today, they are especially important in tropical and subtropical regions of the world, where they help to feed an ever-growing population. Early induction and storage organ size are important agricultural traits, as they determine yield over time. During potato tuberization, environmental and metabolic status are sensed, ensuring proper timing of tuberization mediated by phloem-mobile signals. Coordinated cellular restructuring and expansion growth, as well as controlled storage metabolism in the tuber, are executed. This review summarizes our current understanding of potato tuber development and highlights similarities and differences to important tuberous root crop species like sweetpotato and cassava. Finally, we point out knowledge gaps that need to be filled before a complete picture of storage organ development can emerge.

Conservation of polypyrimidine tract binding proteins and their putative target RNAs in several storage root crops

BackgroundPolypyrimidine-tract binding proteins (PTBs) are ubiquitous RNA-binding proteins in plants and animals that play diverse role in RNA metabolic processes. PTB proteins bind to target RNAs through motifs rich in cytosine/uracil residues to fine-tune transcript metabolism. Among tuber and root crops, potato has been widely studied to understand the mobile signals that activate tuber development. Potato PTBs, designated as StPTB1 and StPTB6, function in a long-distance transport system by binding to specific mRNAs (StBEL5 and POTH1) to stabilize them and facilitate their movement from leaf to stolon, the site of tuber induction, where they activate tuber and root growth. Storage tubers and root crops are important sustenance food crops grown throughout the world. Despite the availability of genome sequence for sweet potato, cassava, carrot and sugar beet, the molecular mechanism of root-derived storage organ development remains completely unexplored. Considering the pivotal role of PTBs and their target RNAs in potato storage organ development, we propose that a similar mechanism may be prevalent in storage root crops as well.ResultsThrough a bioinformatics survey utilizing available genome databases, we identify the orthologues of potato PTB proteins and two phloem-mobile RNAs, StBEL5 and POTH1, in five storage root crops - sweet potato, cassava, carrot, radish and sugar beet. Like potato, PTB1/6 type proteins from these storage root crops contain four conserved RNA Recognition Motifs (characteristic of RNA-binding PTBs) in their protein sequences. Further, 3´ UTR (untranslated region) analysis of BEL5 and POTH1 orthologues revealed the presence of several cytosine/uracil motifs, similar to those present in potato StBEL5 and POTH1 RNAs. Using RT-qPCR assays, we verified the presence of these related transcripts in leaf and root tissues of these five storage root crops. Similar to potato, BEL5-, PTB1/6- and POTH1-like orthologue RNAs from the aforementioned storage root crops exhibited differential accumulation patterns in leaf and storage root tissues.ConclusionsOur results suggest that the PTB1/6-like orthologues and their putative targets, BEL5- and POTH1-like mRNAs, from storage root crops could interact physically, similar to that in potato, and potentially, could function as key molecular signals controlling storage organ development in root crops.

QTL mapping for tuberous stem formation of kohlrabi (Brassica oleracea var. gongylodes L.)

The tuberous stem of kohlrabi is an important quantitative trait, which affects its yield and quality. Genetic control of this trait has not yet been unveiled. To identify the QTLs controlling stem swelling of kohlrabi, a BC1 population of 92 plants was developed from a cross of broccoli DH line GCP04 and kohlrabi var. Seine. A wide range of variation in tuberous stem diameter was observed among the mapping populations. We constructed a genetic map of nine linkage groups (LGs) with different types of markers, spanning a total length of 913.5 cM with an average marker distance of 7.55 cM. Four significant QTLs for radial enlargement of kohlrabi stem, namely, REnBo1, REnBo2, REnBo3, and REnBo4 were detected on C02, C03, C05, and C09, respectively, and accounted for the phenotypic variation of 59% for the stem diameter and 55% for the qualitative grading of tuberous stem in classes. Then, we confirmed the stability of identified QTLs using BC1S1 populations derived from the BC1 plants having heterozygous alleles at the target QTL and homozygous kohlrabi alleles at the remaining QTLs. REnBo1and REnBo2 using 128 plants of BC168S1 and 94 plants of BC143S1, respectively, and REnBo3 and REnBo4 using 152 plants of BC157S1 were detected at the same positions as the respective QTLs of the BC1 population. Confirmation of QTLs in two successive generations indicates that the QTLs are persistent. The QTLs obtained in this study could be useful in marker-assisted selection of kohlrabi breeding, and to understand the genetic mechanisms of stem swelling and storage organ development in kohlrabi and other Brassica species.

Timing of premature acorn abortion in Quercus serrata Thunb. is related to mating pattern, fruit size, and internal fruit development

Timing of acorn development and abortion is an important maternal strategy in oak sexual reproduction. To understand the significance of acorn abortion in Quercus serrata, artificial pollination of different mating patterns (outcross, self-, and nonpollination) was performed, and the timing of abortion and the size and internal development of acorns from each mating type were investigated. Acorns were aborted similarly in every pollination treatment until 80 days after pollination. Almost all self- and nonpollinated acorns were rapidly aborted during the period 80–120 days after pollination. During that period, differences in internal fruit development between outcross-pollinated and unsuitably pollinated (self- and nonpolinated) acorns were observed. In addition, cotyledon development and a rapid increase in fruit size were observed in the acorns gained by outcross pollination. The correspondence between the timing of abortion and the timing of rapid size growth and the development of storage organs suggests that this acorn-maintenance strategy may be the consequence of a maternal adaptation that allows better reproductive success under resource limitation.

Seasonal patterns of carbon assimilation and allocation of a summer-green forest herb, Parasenecio auriculata (Senecioneae; Asteraceae)

Summer-green herbs inhabiting deciduous forests often put out aerial shoots under bright conditions before tree-canopy closure and grow until late summer under the closed canopy. Some of them produce leaves continuously even after the initiation of canopy closure, indicating an exploitation of the low light period. The manner of carbon assimilation during bright and shade periods within a growth season should reflect the seasonal patterns of vegetative growth and reproductive allocation of individual species. We examined the seasonal patterns of assimilation, partitioning of photosynthate between reproduction and storage, and the budget of reproduction of a perennial understory herb, Parasenecio auriculata. Although photosynthetic rates per unit leaf area decreased with the seasonal reduction in light level, net assimilation at the whole-plant level was maintained at a high level even after canopy closure owing to the increase in the total leaf area. Stored resource in tubers contributed to the rapid development of aerial shoots in the early season, and annual tuber growth was completed before flowering. Instant photosynthetic products considerably contributed to the maintenance of flowers but not to fruit development because of low assimilation rate during fruiting. These findings indicated that carbon assimilation during flowering contributes to sexual reproduction without influencing the development of storage organs. Stable carbon assimilation over summer by shade-acclimatized leaves enabled the maintenance of high productivity associated with high sexual reproduction.

Thin Films of Liquid Media for Heterotrophic Growth and Storage Organ Development: Turmeric (Curcuma longa) as a Model Plant

Geophytes store carbohydrates in modified underground shoot systems protected by a broad array of biologically active chemistry. In vitro formation of storage organs requires months in the lab instead of years in the field, when water and nutrients are correctly supplied. Liquid and agar systems in large and small vessels were compared for sugar and water use with turmeric (Curcuma longa) as a model plant. Small jars on a shaker were compared with large, flat-bottomed vessels containing thin films of liquid media, intermittently tilted at slight inclines that allow the advantages of liquid phase transfer with gentle agitation. Liquid culture in small vessels on a shaker yielded the most plants and liquid culture on a thin-film rocker in a large vessel yielded the largest plants. Increased and improved biomass (fresh and dry) in liquid culture compared to agar was based on greater sugar use. When large vessels of liquid media were grown for 5 and 6 months on a rocker, 400 mL of media yielded 150 to 200 g (fresh weight) of plants. Similarly, 13 to 16 g (dry weight) of plant tissue was derived from 24 g of sugar. Plants were about one-third rhizome by fresh mass. Rhizomes had greater dry and fresh weight than leaves or roots, indicating solute actively accumulated in the rhizome. The rhizomes had normal morphology, characteristic pigments and fragrance, and rhizome extracts had strong antioxidant potential. The gentle rocking action of plantlets in sugar-containing liquid medium was demonstrated to produce functional storage organs.

Purine and pyrimidine nucleotide metabolism in higher plants

Purine and pyrimidine nucleotides participate in many biochemical processes in plants. They are building blocks for nucleic acid synthesis, an energy source, precursors for the synthesis of primary products, such as sucrose, polysaccharides, phospholipids, as well as secondary products. Therefore, biosynthesis and metabolism of nucleotides are of fundamental importance in the growth and development of plants. Nucleotides are synthesized both from amino acids and other small molecules via de novo pathways, and from preformed nucleobases and nucleosides by salvage pathways. In this article the biosynthesis, interconversion and degradation of purine and pyrimidine nucleotides in higher plants are reviewed. This description is followed by an examination of physiological aspects of nucleotide metabolism in various areas of growth and organized development in plants, including embryo maturation and germination, in vitro organogenesis, storage organ development and sprouting, leaf senescence, and cultured plant cells. The effects of environmental factors on nucleotide metabolism are also described. This review ends with a brief discussion of molecular studies on nucleotide synthesis and metabolism.

Effects of Light Spectral Quality on Morphogenesis and Source–Sink Relations in Radish Plants

The accumulation of dry matter and the content of major phytohormones in the aboveground and underground plant parts, as well as light curves and the diurnal course of photosynthesis in the leaves were studied in radish (Raphanus sativusL.) plants of different ages that were grown under red (RL) or blue (BL) light. As seen from the rapid increase in plant biomass, the development of storage organs (hypocotyl or tap root) started on the 14th day after the emergence of seedling of the BL plants and on the 21st day for the RL plants. Conversely, RL stimulated biomass accumulation in the aboveground parts (petioles and stems) already in the early stages of plant development. Light spectral quality only slightly affected the activity and the diurnal course of photosynthesis. The GA content was ten times higher in the aboveground parts of the RL plants than those of the BL plants. The hypocotyl of the BL plants contained much higher amounts of cytokinins and IAA than that of the RL plants. The specific responses of the source–sink relations to the light quality were related to the distribution of various phytohormones between the aboveground and underground parts of the plants: RL increased the content of gibberellins (GA) in the aboveground parts of plants, thus increasing their sink activity, whereas BL stimulated the synthesis of cytokinins and IAA in the hypocotyl and enhanced its development. Light quality-specific morphogenetic responses were reversed when plants were treated with exogenous GA or paclobutrazol, an inhibitor of GA synthesis. The treatment of the BL plants with exogenous GA stimulated petiole and hypocotyl elongation and induced stem formation. The treatment of the BL plants with paclobutrazol led to shortened petioles, the flattening of the storage organ, and the disappearance of the stem.

Storage Organ Development in Radish (Raphanus sativus L.). 1. A Comparision of Development in Seedlings and Rooted Cuttings of Two Contrasting Varieties

Storage Organ Development in Radish (Raphanus sativus L.). 1. A Comparision of Development in Seedlings and Rooted Cuttings of Two Contrasting Varieties

Storage Organ Development in Radish (Raphanus sativus L.). 2. Effects of Growth Promoters on Cambial Activity in Cultured Roots, Decapitated Seedlings and Intact Plants

Storage Organ Development in Radish (Raphanus sativus L.). 2. Effects of Growth Promoters on Cambial Activity in Cultured Roots, Decapitated Seedlings and Intact Plants

Speicherungsprozesse — die Rolle der Phytohormone

Storage processes — the role of plant hormonesThe role of plant hormones in the regulation of induction and development of fruits and vegetative storage organs and in the storage process is critically reviewed. Evidence is presented that growth and development of storage organs is regulated by a complex interaction of all known plant hormones. By changing the sink‐capacity the hormones influence the intensity and direction of the assimilate flow. Beyond this more indirect effect on the flow of assimilates few observations indicate a direct effect of hormones on the transport system.