Stony Coral Tissue Loss Disease Research Articles

Metabolomics of Healthy and Stony Coral Tissue Loss Disease Affected Montastraea cavernosa Corals

Stony coral tissue loss disease, first observed in Florida in 2014, has now spread along the entire Florida Reef Tract and on reefs in many Caribbean countries. The disease affects a variety of coral species with differential outcomes, and in many instances results in whole-colony mortality. We employed untargeted metabolomic profiling ofMontastraea cavernosacorals affected by stony coral tissue loss disease to identify metabolic markers of disease. Herein, extracts from apparently healthy, diseased, and recoveredMontastraea cavernosacollected at a reef site near Ft. Lauderdale, Florida were subjected to liquid-chromatography mass spectrometry-based metabolomics. Unsupervised principal component analysis reveals wide variation in metabolomic profiles of healthy corals of the same species, which differ from diseased corals. Using a combination of supervised and unsupervised data analyses tools, we describe metabolite features that explain variation between the apparently healthy corals, between diseased corals, and between the healthy and the diseased corals. By employing a culture-based approach, we assign sources of a subset of these molecules to the endosymbiotic dinoflagellates, Symbiodiniaceae. Specifically, we identify various endosymbiont- specific lipid classes, such as betaine lipids, glycolipids, and tocopherols, which differentiate samples taken from apparently healthy corals and diseased corals. Given the variation observed in metabolite fingerprints of corals, our data suggests that metabolomics is a viable approach to link metabolite profiles of different coral species with their susceptibility and resilience to numerous coral diseases spreading through reefs worldwide.

Considering Commercial Vessels as Potential Vectors of Stony Coral Tissue Loss Disease.

Stony coral tissue loss disease (SCTLD) is a troubling new disease that is spreading rapidly across the greater Caribbean region, but the etiological agent(s) and the mechanisms(s) of spread are both unknown. First detected off the coast of Miami, Florida, major ocean currents alone do not explain the pattern of spread, with outbreaks occurring across geographically disjunct and distant locations. This has raised concerns by researchers and resource managers that commercial vessels may contribute as vectors to spread of the disease. Despite existing regulatory and management strategies intended to limit coastal marine invasion risks, the efficacy of these measures is still unresolved for ship-borne microorganisms, and disease transport via ballast water and hull biofouling are under examination given the high ship traffic in the region. Here, to help inform the discussion of ships as possible vectors of SCTLD, we provide an overview of the current state of knowledge about ships and their potential to transfer organisms in the greater Caribbean, focusing in particular on ballast water, and outline a set of recommendations for future research.

Microbial bioindicators of Stony Coral Tissue Loss Disease identified in corals and overlying waters using a rapid field-based sequencing approach.

Stony Coral Tissue Loss Disease (SCTLD) is a devastating disease. Since 2014, it has spread along the entire Florida Reef Tract and into the greater Caribbean. It was first detected in the United States Virgin Islands in January 2019. To more quickly identify microbial bioindicators of disease, we developed a rapid pipeline for microbiome sequencing. Over a span of 10 days we collected, processed and sequenced coral and near-coral seawater microbiomes from diseased and apparently healthy Colpophyllia natans, Montastraea cavernosa, Meandrina meandrites and Orbicella franksi. Analysis of bacterial and archaeal 16S ribosomal RNA gene sequences revealed 25 bioindicator amplicon sequence variants (ASVs) enriched in diseased corals. These bioindicator ASVs were additionally recovered in near-coral seawater (<5cm of coral surface), a potential reservoir for pathogens. Phylogenetic analysis of microbial bioindicators with sequences from the Coral Microbiome Database revealed that Vibrio, Arcobacter, Rhizobiaceae and Rhodobacteraceae sequences were related to disease-associated coral bacteria and lineages novel to corals. Additionally, four ASVs (Algicola, Cohaesibacter, Thalassobius and Vibrio) were matches to microbes previously associated with SCTLD that should be targets for future research. Overall, this work suggests that a rapid sequencing framework paired with specialized databases facilitates identification of microbial disease bioindicators.

Multi-Variate Analyses of Coral Mortality From the 2014–2015 Stony Coral Tissue Loss Disease Outbreak Off Miami-Dade County, Florida

Environmental compliance monitoring associated with the Port Miami dredging project (2013–2015), designed to assess the impact of project-generated sediments on the local coral community, fortuitously captured a thermal bleaching event and the first reports of an emergent, highly contagious, white-plague-like coral disease outbreak in the fall of 2014. The disease, now termed stony coral tissue loss disease (SCTLD), has decimated reefs throughout Florida and is now spreading across the Caribbean. The high prevalence of disease, the number of affected species, and the high mortality of corals affected suggests SCTLD may be the most lethal coral disease ever recorded. Previous analyses of the dredge monitoring data have reached mixed conclusions about the relative impact of dredging on coral mortality and has often parsed out disease susceptible individuals to isolate the impacts of dredging only. We use multi-variate analyses, including time-based survival analyses, to examine the timing and impacts of dredging, coral bleaching, and disease on local coral mortality. By examining the status of corals monthly from the October 2013 to July 2015 observational period, we found that coral mortality was not significantly affected by a coral’s proximity to the dredge site or sediment burial. Instead, coral mortality was most strongly impacted by disease and the emergence of SCTLD during the monitoring period. During the 2-year monitoring period, 26.3% of the monitored corals died, but the only conditions significantly affected by the dredge were partial burial and partial mortality. The strongest link to mortality was due to disease, which impacted coral species differently depending on their susceptibility to SCTLD. The focus on disturbances associated with dredging created a circumstance where the greater impacts of this emergent disease were downplayed, leading to a false narrative of the resulting mortality on the local coral communities. The results of this study reveal that while local events such as a dredging project do have quantifiable effects and can be harmful to corals, regional and global threats that result in mass coral mortality such as thermal stress and disease represent an existential threat to coral reefs and must be urgently addressed.

Changing Stony Coral Tissue Loss Disease Dynamics Through Time in Montastraea cavernosa

Stony coral tissue loss disease (SCTLD) is affecting corals across the Western Atlantic and displays species-specific and regional differences in prevalence, incidence, degree of mortality, and lesion morphology. We examined two Florida sites with different temporal histories of disease emergence; Fort Lauderdale where SCTLD is endemic and the Lower Florida Keys where SCTLD has recently emerged. Our objectives were to (1) assess the potential impact of SCTLD on overall reef condition by surveying reefs in each region, (2) in a single common species, Montastraea cavernosa, examine differences in SCTLD prevalence, colony mortality, and lesion morphology in each region, and (3) look for differences in contagion by conducting transmission experiments using lesions from each region. Reef surveys found sites in both regions had low coral cover, high algae cover, and similar coral species composition. SCTLD prevalence was higher in the Lower Keys than at Fort Lauderdale and two of the common species, M. cavernosa and S. siderea at Fort Lauderdale were dominated by smaller colonies (&amp;lt;5 cm) whereas larger colonies occurred in the Lower Keys. Tagged M. cavernosa SCTLD-affected colonies were followed for 2 years at one site in each region. In both years, Fort Lauderdale colonies showed declining disease prevalence, low colony mortality, and disease lesions were mainly bleached spots lacking tissue loss. In contrast, Lower Keys colonies tagged in the first year maintained 100% disease prevalence with high mortality, and disease lesions were predominantly tissue loss with no bleached edges. However, SCTLD dynamics changed, with year two tagged colonies showing declining disease prevalence, low mortality, and lesion morphology switched to a mixture of bleached polyps and tissue loss with or without bleached edges. Lesion morphology on colonies was a significant predictor of amount of tissue loss. Aquaria studies found the rate of SCTLD transmission using lesions from the different zones (emergent and endemic) were similar. Our study highlights that differences in coral mortality from SCTLD are not necessarily linked to host species, lesion morphology is reflective of subsequent rate of mortality, and disease dynamics change through time on reefs where the disease has newly emerged.

Measuring Stony Coral Tissue Loss Disease Induction and Lesion Progression Within Two Intermediately Susceptible Species, Montastraea cavernosa and Orbicella faveolata

During the last several decades, Florida’s Coral Reef (FCR) has been impacted by both global and local stressors that have devastated much of its living coral cover. Additionally, since 2014 FCR has experienced a lethal disease outbreak termed stony coral tissue loss disease (SCTLD). Here, we examined SCTLD spreading dynamics within and among fragmented coral colonies and quantified lesion progression rate of two intermediately susceptible species—Montastraea cavernosaandOrbicella faveolata—through induction experiments conducted in laboratory aquaria.M. cavernosacolonies showing subacute tissue loss were sequentially fragmented parallel to the lesion edge to determine whether isolated tissue that showed no tissue-loss signs, referred to as isolated apparently healthy (AH) donor fragments, would subsequently exhibit tissue loss. Additionally, AHM. cavernosaandO. faveolatafragments, referred to as recipient fragments, were placed in direct contact with theM. cavernosadonor fragments to assess incidence of new tissue-loss lesions. Finally, AHM. cavernosadonor fragments were placed in direct contact with recipientM. cavernosaandO. faveolatafragments to account for aggression from direct contact. Samples were collected for histopathology of the corals through time. Many isolated AH donor fragments developed tissue-loss lesions during the 60-day study, suggesting SCTLD may be systemic within small-sized colonies. Our results confirmed that physical contact between recipient fragments and subacute SCTLD-lesioned tissue often led to tissue loss in recipient fragments. None of the control recipient or donor fragments experienced tissue loss. Grossly, multifocal lesions started on or adjacent to the septal and costal basal body walls with tissue loss progressing across the polyp septa and coenenchyme, respectively, in both species. Histologically, initial tissue-loss lesions in both species exhibited characteristic lytic necrosis (LN) at the basal body wall of the gastrodermis.O. faveolataexhibited higher rates of lesion appearance and subsequent mortality compared toM. cavernosa, but once a lesion appeared,M. cavernosalost tissue faster thanO. faveolata.This work contributes to the growing knowledge of SCTLD dynamics and highlights the differences in lesion progression within susceptible species.

Prevalence of Stony Coral Tissue Loss Disease at El Seco, a Mesophotic Reef System off Vieques Island, Puerto Rico

Mesophotic coral ecosystems (MCEs) are ecologically and functionally vital, as they are Essential Fish Habitats that function as refugia for corals and sponges of shallow-water reefs. Stony Coral Tissue Loss Disease (SCTLD) is a relatively new lethal coral disease, first affecting coral reefs in Florida and has now spread through most of the Caribbean. SCTLD was observed in Puerto Rico in December 2019 in Culebra Island. Since then, SCTLD has appeared along the east coast of Puerto Rico, affecting primarily shallow reefs in San Juan, Culebra and Vieques Island, and Fajardo. During late June and July 2020, four mesophotic reef habitats were surveyed at El Seco (off Vieques Island), on the southeast coast of Puerto Rico. SCTLD was observed at colonized pavement (CPRT – 23–30 m), bank coral reef (BCR – 35–40 m), patch coral reef (PCR – 36–42 m), and rhodolith (Rhodo – 40–50 m) habitats. The mean percent substrate cover by sessile-benthic categories varied significantly between habitats (PERMANOVA, p &amp;lt; 0.001), with a higher mean (± SE) coral cover at BCR (26.95 ± 5.60%), followed by PCR (12.88 ± 3.88%). SCTLD was detected in all habitats, but the disease prevalence was significantly higher at BCR, ranging from 9.70 to 21.13% of colonies infected (Kruskal-Wallis ANOVA, p &amp;lt; 0.007). Even though PCR habitats exhibited less coral cover, SCTLD prevalence was still elevated ranging from 6.66 to 15.07%. The deepest record of SCTLD at El Seco was 40.9 m. The majority (∼98%) of the corals infected with the disease were from the Orbicella complex spp. (faveolata/franksi). However, there were other infected species, such as Agaricia grahamae, A. lamarcki, Montastraea cavernosa, and Porites astreoides. As seen in the surveys conducted in 2011 and 2020, the loss of coral cover allows for the emergence of other benthic “detractors,” such as peyssonnelids, specifically Ramicrusta spp. Ramicrusta spp., an aggressive encrusting red alga known to take over available space and overgrow corals, significantly increased its substrate cover at the impacted reefs. Therefore, the severity and virulence of SCTLD will most likely have severe and long-lasting negative impacts on the coral communities at El Seco mesophotic reef system.

The Emergence and Initial Impact of Stony Coral Tissue Loss Disease (SCTLD) in the United States Virgin Islands

Coral communities in the Caribbean face a new and deadly threat in the form of the highly virulent multi-host stony coral tissue loss disease (SCTLD). In late January of 2019, a disease with signs and characteristics matching that of SCTLD was found affecting a reef off the coast of St. Thomas in the U.S. Virgin Islands (USVI). Identification of its emergence in the USVI provided the opportunity to document the initial evolution of its spatial distribution, coral species susceptibility characteristics, and its comparative impact on coral cover at affected and unaffected coral reef locations. Re-assessments at sentinel sites and long-term monitoring locations were used to track the spread of the disease, assess species affected, and quantify its impact. The disease was initially limited to the southwest of St. Thomas for several months, then spread around the island and to the neighboring island of St. John to the east. Differences in disease prevalence among species were similar to reports of SCTLD from other regions. Highly affected species included Colpophyllia natans, Eusmilia fastigiata, Montastraea cavernosa, Orbicella spp., and Pseudodiploria strigosa. Dendrogyra cylindrus and Meandrina meandrites were also highly affected but showed more variability in disease prevalence, likely due to initial low abundances and the rapid loss of colonies due to disease. Siderastrea spp. were less affected and showed lower prevalence. Species previously reported as unaffected or data deficient that were found to be affected by SCTLD included Agaricia spp., Madracis spp., and Mycetophyllia spp. We also observed multi-focal lesions at SCTLD-affected sites on colonies of Porites astreoides, despite that poritids have previously been considered low or not susceptible to SCTLD. Loss of coral cover due to acute tissue loss diseases, which were predominantly SCTLD, was significant at several monitoring locations and was more impactful than previous mass bleaching events at some sites. There are no signs that the USVI SCTLD outbreak is abating, therefore it is likely that this disease will become widespread across the U.S. Caribbean and British Virgin Islands in the near future.

Impacts of Stony Coral Tissue Loss Disease (SCTLD) on Coral Community Structure at an Inshore Patch Reef of the Upper Florida Keys Using Photomosaics

Since the appearance of stony coral tissue loss disease (SCTLD) on reefs off Miami in 2014, this unprecedented outbreak has spread across the entirety of Florida’s coral reef tract, as well as to many territories throughout the Caribbean. The endemic zone reached the upper Florida Keys by 2016, resulting in partial or complete mortality of coral colonies across numerous species. Disease was first observed at Cheeca Rocks (Islamorada, Florida) in the beginning of 2018, with reports of coral mortality peaking mid-year. The disease was still present at Cheeca Rocks as of March 2020, however, to a lesser degree compared to the initial outbreak. Annual monitoring efforts have been ongoing at Cheeca Rocks since 2012, including repeated benthic photomosaics of a 330 m2 survey zone, spanning six replicate sites. As such, a repository of coral community composition data exists for before and after the disease outbreak that was analyzed to assess the impacts of SCTLD on reef communities at an upper Florida Keys inshore reef. Cheeca Rocks is hypothesized to be a resilient reef due to its persistent high coral cover despite its inshore location, which subjects corals to fluctuating water quality and marginal environmental conditions. Coral populations here have been shown to recover from bleaching events and heat stress with minimal coral mortality. Though colonies of coral species characterized as highly and moderately susceptible to SCTLD (e.g., Colpophyllia natans, Diploria labyrinthiformis, Pseudodiploria strigosa, Orbicella annularis, and O. faveolata) suffered mortality as a result of the outbreak with an average loss of 16.42% relative cover by species, the overall impacts on coral cover and community structure were relatively low, contributing to a loss of total coral cover of only 1.65%. Comparison of photomosaic data to other studies indicate Cheeca Rocks may not have been affected as severely as other sites on Florida’s coral reef tract, underlying this site’s potential role in coral resilience to stressors including bleaching events, land-based pollution, and disease epizootics.

Short- and Long-Term Effectiveness of Coral Disease Treatments

Since 2014, stony coral tissue loss disease (SCTLD) has led to large-scale mortality of over 20 coral species throughout the Florida Reef Tract. In 2019, in-water disease intervention strategies were implemented to treat affected corals. Two treatment strategies were employed: (1) topical application of an amoxicillin paste directly to disease margins, and (2) application of a chlorinated epoxy to disease margins as well as an adjacent “disease break” trench. Effectiveness of treatments on 2,379 lesions from 725 corals representing five species was evaluated using mixed effects logistic regression models which demonstrated substantially greater effectiveness of amoxicillin compared to chlorine-treated lesions across all species up to 3 months post-treatment. As a result of the failed chlorinated epoxy treatments, any new lesions that appeared during subsequent monitoring events were treated with amoxicillin paste, and all corals were monitored and treated as needed approximately every 2 months for up to 24 months. The health status of 1664 amoxicillin-treated corals during each monitoring event was used to model the probability of a coral being uninfected over time. Models included species and geographic regions as variables. The appearance of new lesions (reinfection rates) varied by species, and offshore sites showed greater reinfection rates than inshore sites; however, all sites and species exhibited a decreased probability of reinfection with time since initial treatment. We conclude that topical amoxicillin treatments are highly effective at halting SCTLD lesions and that through initial and follow-up treatments as needed, colonies and reef sites will progress toward a lower prevalence of SCTLD.

Saving the Last Unicorns: The Genetic Rescue of Florida’s Pillar Corals

As stony coral tissue loss disease (SCTLD) swept through the Florida Reef Tract, one of the most severely impacted species was the iconic pillar coral, Dendrogyra cylindrus. As the species’ population experienced a precipitous decline, a collaborative rescue project collected colony fragments for safekeeping at onshore and offshore nursery facilities. Between 2015 and 2019, a total of 574 fragments representing 128 genotypes were collected. These are currently dispersed among five facilities where they continue to provide opportunities to (1) refine best husbandry practices for D. cylindrus, (2) develop treatment options for SCTLD that have been adapted for use on other species, (3) maximize growth and fragmentation to provide the live tissue needed for eventual restoration, and (4) provide a source of parent colonies for assisted sexual reproduction and new genetic diversity. With the wild pillar coral population in Florida at the end of 2020 at less than 6% of its known 2014 population and continuing to decline, the rescued ex situ colonies represent the entirety of the restoration potential for this species in Florida.

Spatial and Temporal Patterns of Stony Coral Tissue Loss Disease Outbreaks in The Bahamas

Coral reefs of Grand Bahama and New Providence islands in The Bahamas have been surveyed several times over the past decade, and long-term monitoring indicates declines in coral cover associated with hurricanes, bleaching events, and local threats. However, the greatest declines in coral populations in The Bahamas over the past decade may be attributed to the recent introduction of stony coral tissue loss disease (SCTLD). In 2019, a comprehensive assessment of both islands was conducted using Atlantic and Gulf Rapid Reef Assessment (AGRRA) methods to characterize reefs before SCTLD was reported in The Bahamas. Following reports of SCTLD in late 2019, timed roving diver assessments of corals were conducted for Grand Bahama in March 2020 and New Providence in June 2020 to determine which species were affected by the disease and the proportion of corals that were healthy, infected with SCTLD, and those that appeared to have experienced recent mortality for the most abundant intermediate or highly susceptible species. Additional surveys were conducted for both islands in January 2021 to further assess the extent of the outbreak, and repeated assessments of several sites for each island were used to determine the impact of the disease on corals over the previous 6.5 to 10.5 months. Infection rates varied among species following patterns described for Florida and elsewhere, with higher infection rates occurring in vulnerable species for both Grand Bahama and New Providence. Pseudodiploria strigosa appears to be the most affected species with 45.6% of colonies on Grand Bahama infected and 23.1% infected on New Providence and recent mortality rates of 31.5 and 42.7%, respectively, at the time of surveys. Spatial patterns of mortality and infection rates for the most vulnerable species were greatest close to international commercial shipping ports on both islands, suggesting SCTLD has been present in those locations for a longer time, and the proportion of healthy colonies increased with distance from the port. For Grand Bahama, there was also a significant effect of depth, with shallow reefs having a higher proportion of colonies that was infected or experienced recent mortality. For New Providence, sites to the east of the port saw a sharp decline in infection and mortality rates with distance compared to sites west of the port, where nearly the entire coastline was affected by SCTLD. Temporal analyses showed an increase in recent mortality and a decrease in active infection for most species on both islands, but little change in the proportion of healthy corals, suggesting some degree of resistance to the disease. Because Freeport and Nassau are the two largest container ports in The Bahamas and are over 200 km apart with multiple islands between them where SCTLD has not yet been reported, it is probable that SCTLD arrived in The Bahamas via commercial shipping, followed by rapid spread within islands via local currents and other vectors. Results from this study stress the need for early detection and suggest that preventing the spread of the disease between islands via vessel traffic is of utmost importance.

Optimizing Stony Coral Tissue Loss Disease (SCTLD) Intervention Treatments on Montastraea cavernosa in an Endemic Zone

Stony coral tissue loss disease (SCTLD) has persisted since 2014 in the Southeast Florida Coral Reef Ecosystem Conservation Area (Coral ECA) where it was first discovered. Most of the highly susceptible corals have perished, leaving Montastraea cavernosa as the most abundant reef-building species with high SCTLD prevalence. Disease interventions (DI) have been conducted throughout Florida’s Coral Reef to save the remaining corals and reduce the disease prevalence with varying degrees of success. The two main treatments were chlorinated (Chl) epoxy and an antibiotic paste. The antibiotic paste was highly effective in the Florida Keys, but its effectiveness in the Coral ECA was questionable. Therefore, we compared the effectiveness of the antibiotic paste and Chl epoxy treatments on M. cavernosa to optimize DI efforts on this species in the Coral ECA. Significant differences were found between the treatment materials and applications related to the proportion of quiesced lesions and corals where antibiotic paste (91.2% success) outperformed Chl epoxy (20% success). By day 351, 50.6% of the antibiotic paste disease-break tissue was fully healed compared to 2.2% of the total Chl epoxy-filled disease-break area. During the study, new lesions occurred on previously treated colonies, as well as colonies not previously treated and new lesion rates varied through time, indicating revisitation is necessary to eliminate disease. Most margin treatments failed within the first 9 days, however, most disease-breaks failed before 44 days. Considering the high treatment success of the antibiotic paste and the conditional variation of new lesion rates, about 1 month is a good practical re-visitation time for retreating failures and any new lesions. DI using antibiotic paste is currently the most effective way to intervene the SCTLD epidemic, but this is only effective as a stopgap measure while the larger causative agents are identified and remediated. Conducting DI at a reef-scape scale is time consuming and requires extensive person-power and resources, making it very expensive. But this expense pales in comparison to the current cost to restore the diversity and live tissue saved with DI. This method also comes with the risk of introducing antibiotics into coral reef environments, which may have unintended outcomes.

Gene Expression Response to Stony Coral Tissue Loss Disease Transmission in M. cavernosa and O. faveolata From Florida

Since 2014, corals within Florida’s Coral Reef have been dying at an unprecedented rate due to stony coral tissue loss disease (SCTLD). Here we describe the transcriptomic outcomes of three different SCTLD transmission experiments performed at the Smithsonian Marine Station and Mote Marine Laboratory between 2019 and 2020 on the corals Orbicella faveolata and Montastraea cavernosa. Overall, diseased O. faveolata had 2194 differentially expressed genes (DEGs) compared with healthy colonies, whereas diseased M. cavernosa had 582 DEGs compared with healthy colonies. Many significant DEGs were implicated in immunity, extracellular matrix rearrangement, and apoptosis. These included, but not limited to, peroxidases, collagens, Bax-like, fibrinogen-like, protein tyrosine kinase, and transforming growth factor beta. A gene module was identified that was significantly correlated to disease transmission. This module possessed many apoptosis and immune genes with high module membership indicating that a complex apoptosis and immune response is occurring in corals during SCTLD transmission. Overall, we found that O. faveolata and M. cavernosa exhibit an immune, apoptosis, and tissue rearrangement response to SCTLD. We propose that future studies should focus on examining early time points of infection, before the presence of lesions, to understand the activating mechanisms involved in SCTLD.

Diversity and Disease: The Effects of Coral Diversity on Prevalence and Impacts of Stony Coral Tissue Loss Disease in Saint Thomas, U.S. Virgin Islands

Stony coral tissue loss disease (SCTLD) was first observed in St. Thomas, U.S. Virgin Islands (USVI) in January 2019. This disease affects at least 20 scleractinian coral species; however, it is not well understood how reef diversity affects its spread or its impacts on reef ecosystems. With a large number of susceptible species, SCTLD may not follow the diversity-disease hypothesis, which proposes that high species diversity is negatively correlated with disease prevalence. Instead, SCTLD may have a higher prevalence and a greater impact on reefs with higher coral diversity. To test this, in 2020 we resampled 54 sites around St. Thomas previously surveyed in 2017 or 2019 by the National Oceanic and Atmospheric Administration National Coral Reef Monitoring Program. These sites represented a variety of species diversity values [categorized into poor (&amp;lt;12 spp. rich.) and rich (≥12 spp. rich.)] in multiple disease zones (Endemic: disease present ≥ 9 months; Epidemic: disease present 2–6 months; Control and Emergent: disease present no disease/&amp;lt;2 months). We hypothesized that, contrary to the diversity-disease hypothesis, sites with high species diversity (as measured by species richness or Simpson’s index) would have higher disease prevalence within the epidemic zone, and that high species diversity sites would have a greater impact from disease within the endemic zone. Results indicated a significant positive relationship between disease prevalence and diversity in the epidemic zone, and a similar trend in the endemic zones. Additionally, a negative relationship was seen between pre-outbreak diversity and loss of diversity and coral cover within the endemic zone. This supports the hypothesis that higher diversity predicts greater disease impact and suggests that SCTLD does not follow the diversity-disease hypothesis. Within the epidemic zone, the species with the highest SCTLD prevalence were Dendrogyra cylindrus, Colpophyllia natans, and Meandrina meandrites, while in the endemic zone, Diploria labyrinthiformis, Pseudodiploria strigosa, Montastraea cavernosa, and Siderastrea siderea had the highest SCTLD prevalence. Understanding the relationship between species diversity and SCTLD will help managers predict the most vulnerable reefs, which should be prioritized within the USVI and greater Caribbean region.

Quantifying impacts of stony coral tissue loss disease on corals in Southeast Florida through surveys and 3D photogrammetry.

Since 2014, stony coral tissue loss disease (SCTLD) has contributed to substantial declines of reef-building corals in Florida. The emergence of this disease, which impacts over 20 scleractinian coral species, has generated a need for widespread reef monitoring and the implementation of novel survey and disease mitigation strategies. This study paired SCTLD prevalence assessments with colony-level monitoring to help improve understanding of disease dynamics on both individual coral colonies and at reef-wide scales. Benthic surveys were conducted throughout the northern Florida Reef Tract to monitor the presence/absence of disease, disease prevalence, and coral species affected by SCTLD. Observed SCTLD prevalence was lower in Jupiter and Palm Beach than in Lauderdale-by-the-Sea or St. Lucie Reef, but there were no significant changes in prevalence over time. To assess colony-level impacts of the disease, we optimized a low-cost, rapid 3D photogrammetry technique to fate-track infected Montastraea cavernosa coral colonies over four time points spanning nearly four months. Total colony area and healthy tissue area on fate-tracked colonies decreased significantly over time. However disease lesion area did not decrease over time and was not correlated with total colony area. Taken together these results suggest that targeted intervention efforts on larger colonies may maximize preservation of coral cover. Traditional coral surveys combined with 3D photogrammetry can provide greater insights into the spatiotemporal dynamics and impacts of coral diseases on individual colonies and coral communities than surveys or visual estimates of disease progression alone.

Education and Research: A Symbiosis to Better Understand a Novel Coral Disease

Ongoing ecological events, such as new and emerging diseases, provide an important platform for education and research. Field courses and undergraduate research projects can be critical to assisting students with learning scientific skills and career discernment as these experiences provide more one-on-one instruction and an immersive learning environment. A novel coral disease called “Stony Coral Tissue Loss Disease” (SCTLD) provided one such opportunity. SCTLD is characterized by rapid progression with entire coral heads dying within 2–3 weeks after initial observation of the onset of symptoms. At a wider geographic scale, the disease has migrated with extreme velocity and has now been documented across the Caribbean from as far North as the Southeast Florida Reef Tract, as far South as St. Lucia, and as far West as Honduras and Belize. Here, I summarize what is currently known about SCTLD and document an educational field course that involved eight undergraduate students with visits to multiple locations along the Florida Keys Reef Tract during the disease progression in March 2019. Students were able to observe sites where SCTLD had been present for over 2 years and sites where the disease was only just emerging for observational comparison. Student educational outcomes from field trips and activities will be discussed. Current research and educational activities can interact to enhance each other, creating a positive feedback loop. Future directions for research, educational opportunities, and their interaction to accelerate understanding of this novel disease are discussed.

Repeated ex situ Spawning in Two Highly Disease Susceptible Corals in the Family Meandrinidae

Members of the family Meandrinidae are highly susceptible to stony coral tissue loss disease, resulting in population reductions up to 88% in both Dendrogyra cylindrus and Meandrina meandrites along the Florida Reef Tract. Reductions in abundance on this scale leave these species susceptible to limitations in sexual reproduction and natural recovery without intervention. In response to the ongoing outbreak of the disease across the Caribbean, a variety of genetic rescue projects have been implemented to bring disease susceptible species into ex situ culture and preserve living genetic diversity. In this study, corals being held in a long-term ex situ genetic bank were maintained using artificial lighting and temperature cues programmed to mimic natural cycles in Key Largo, FL, United States. Synchronized broadcast spawning events in both species were documented in aquaria over two annual spawning cycles in 2019 and 2020. Timing of gamete release relative to the perceived date and sunset was highly synchronized with wild observations. Up to 21 unique D. cylindrus genotypes collected from reef locations spanning over 230 km contributed gametes to the larval pool. The majority of these parental colonies are no longer alive in the wild. Repeatable and predictable ex situ spawning events such as these will become an essential tool for managed breeding and assisted fertilization in species suffering from severe population declines. These annual events have the potential to produce thousands of genetically diverse offspring for restoration efforts and offer future hope for the long-term survival of these threatened species.

Cryopreservation of sperm from the brain coral Diploria labyrinthiformis as a strategy to face the loss of corals in the Caribbean

In this study, we evaluated the efficacy of sperm cryopreservation for use in larval-based propagation of Diploria labyrinthiformis and produced offspring that were maintained under controlled conditions. Gametes were collected from colonies in situ in July and August 2017 and 2018. The four largest colonies out of a total of nine appear to be senescent or produce low-quality sperm or eggs. Sperm was cryopreserved for comparison of the effects of storage time on sperm viability. We determined that cryopreserved sperm from D. labyrinthiformis is viable for at least 13 months for use in in vitro crosses, though their motility is reduced on average by 24% in comparison with fresh sperm. Using frozen sperm to fertilize freshly collected eggs led to successful fertilization, larval yields, settlement and post-settlement survival. In general, these were lower by 23%, 23%, 14% and 8%, respectively, when compared to controls fertilized with fresh sperm. Our results suggest that motility of fresh sperm is not a good indicator of the future fate of larvae because in some cases low motility led to successful settlement. We also found that not all crosses were successful, and that the direction of the cross significantly affects larval yields and settlement. Once symbionts were noticeable within the primary polyps the cryo-recruits were maintained in an ex situ nursery for observation and showed similar survival with respect to recruits produced with fresh sperm. Prior to the 2018 spawning event, Stony Coral Tissue Loss Disease (SCTLD) was detected in the studied colonies and by February 2020 seven of the nine colonies (78%) had succumbed to the disease. The sperm from these colonies was banked in a repository and since then has been used in genetic rescue projects for this species. Thus, we show that cryopreservation is a useful tool in actions designed to recover D. labyrinthiformis and can potentially be applied to other species of corals severely affected by SCTLD or in need of genetic rescue.

Environmental and biological drivers of white plague disease on shallow and mesophotic coral reefs

Outbreaks of coral white plague (WP) disease have caused significant regional declines of reef‐building Caribbean corals. Due to a greater availability of epidemiological data, studies have primarily focused on shallow coral reefs (&lt; 30 m). In the U.S. Virgin Islands, however, WP disease prevalence appears to be higher on upper mesophotic (30–40 m) coral reefs when compared with shallow reefs and may be inhibiting coral recovery after environmental disturbances. The aim of this study was to investigate the relationship of environmental drivers with spatio‐temporal patterns of WP prevalence across shallow and mesophotic coral reefs in the U.S. Virgin Islands. We recorded WP prevalence at 13 reef sites (five shallow, three mid‐depth and five upper‐mesophotic reefs) across the south shelf of St. Thomas approximately monthly between 2012 and 2015 using a drop camera method. The influence of environmental factors on disease prevalence was investigated using Bayesian inference with generalized linear mixed‐effect models. We found that WP tended to increase during the beginning of the rainy season (June), and when levels of water turbidity and temperature were higher, and levels of oxygen and salinity lower. The disease prevalence was higher on mesophotic than on shallow or mid‐depth reefs, probably due to higher availability of corals (host), and a possible temperature threshold for WP occurrence that allows long‐term persistence (year‐round) of the disease on upper‐mesophotic reefs. This is the first study to implement the drop camera method to survey a coral disease over several reef sites and depths. This method can be applied on surveys of other rapid tissue loss diseases, such as the newly emergent stony‐coral‐tissue‐loss‐disease (SCTLD).