Agricultural microgrid provides a promising solution for energy supply of rural areas in a cost-effective way. In this paper, the principle of wind-pumped storage integrated agricultural microgrid to fulfill both the electric and water load demand is explored. From the perspective of risk aversion, the indexes of expected power not served (EPNS) and expected power curtailment (EPC) are derived to evaluate the uncertain wind power. Then, a stochastic day-ahead scheduling model of wind-pumped storage power system and irrigation system is proposed to minimize the total operation cost whilst achieve the peak load shaving by taking the advantage of wind-pumped storage compensation. The proposed model is a complex optimization problem that takes into account distributed generations, electrical and water demand, turbine flow rate, and irrigation time and volume. We propose a intraspecific competition (IC) based evolutionary predator and prey strategy (EPPS) to solve the model. Finally, simulation results conducted on an agricultural microgrid have verified that, compared to previous works in the literature, the proposed model can effectively improve the utilization of wind power, reduce the operation cost of microgrid as well as smooth load curve. Additionally, the proposed algorithm can get a more competitive solution than other recently developed algorithms.