Stem Lodging Research Articles

Optimized Phosphorus Application Enhances Wheat Stem Lodging Resistance Under Spring Low-Temperature Stress

Spring low-temperature stress (LTS) has become a major limiting factor for the development of high yield, quality and efficiency in wheat production. It not only affects the function of wheat leaves and the development of spikes but also impacts stem lodging resistance, and may experience elevated risk of stem lodging. This study conducted a field pot experiment to assess the effect of phosphorus fertilizer application mode on wheat stem lodging resistance under spring LTS. Two wheat varieties, Yannong19 (YN19, cold-tolerant variety) and Xinmai26 (XM26, cold-sensitive variety) used as the experiment material. Two phosphorus fertilizer application models including traditional phosphorus application (TPA) and optimized phosphorus application (OPA) were employed. Temperature treatment was conducted at 15 °C (CK) and −4 °C (LT) in a controlled phytotron. Our results showed that spring LTS decreased the stem wall thickness and internode fullness, and altered stem anatomical structure and chemical composition, resulting in a decrease in wheat stem mechanical strength and lodging resistant index. Compared with TPA, the OPA increased the stem wall thickness and internode fullness. The thickness of the stem mechanic tissue layer and parenchymatous tissue, and the area of the large vascular bundle and small vascular bundle were increased by the OPA, which alleviated the damage to stem cell walls caused by spring LTS. At the same time, the OPA also increased the contents of lignin, cellulose, and soluble sugar, improving the C/N ratio in wheat stem. Due to the improved stem morphological characteristics, anatomical structure, and chemical compositions, the wheat stem exhibited enhanced lodging resistance, which increased the lodging resistant index of the 2nd and 3rd internodes of YN19 and XM26 by 27.27%, 11.63% and 14.15%, 15.73% at the dough stage compared with TPA under spring LTS. Meanwhile, OPA could not only alleviate the yield loss caused by spring LTS, but also increase the grain yield without spring LTS. This study indicated that OPA enhances wheat stem lodging resistance under spring LTS, and would be meaningful and practical for improving wheat resistance to low-temperature stress.

Early Flowering and Maturity Promote the Successful Adaptation and High Yield of Quinoa (Chenopodium quinoa Willd.) in Temperate Regions

Quinoa (Chenopodium quinoa Willd.) can offer an alternative for staple food considering its tolerance to abiotic stresses and high seed quality. However, its cultivation in temperate regions has not been successful due to its photoperiod sensitivity and low seed yield. This study investigated the agronomical performance and quality traits of 48 accessions for cultivation in northern Europe. We conducted two-year field trials and phenotyped traits related to phenological development, plant architecture, yield components, seed quality, and disease resistance. The major determinants of seed yield in this study were days to flowering, days to maturity, thousand-kernel weight, and panicle density, while downy mildew susceptibility and stem lodging showed a negative correlation with seed yield. We developed a selection index to enable simultaneous selection based on different important agronomical traits. We evaluated the stability of different accessions over the two years of the experiment. Finally, we provided a list of 10 selected accessions that can be directly integrated and serve as new crossing parents in quinoa breeding programs for temperate regions.

Trait-customized sampling of core collections from a winter wheat genebank collection supports association studies.

Subsampling a reduced number of accessions from ex situ genebank collections, known as core collections, is a widely applied method for the investigation of stored genetic diversity and for an exploitation by breeding and research. Optimizing core collections for genome-wide association studies could potentially maximize opportunities to discover relevant and rare variation. In the present study, eight strategies to sample core collections were implemented separately for two traits, namely susceptibility to yellow rust and stem lodging, on about 6,300 accessions of winter wheat (Triticum aestivum L.). Each strategy maximized different parameters or emphasized another aspect of the collection; the strategies relied on genomic data, phenotypic data or a combination thereof. The resulting trait-customized core collections of eight different sizes, covering the range between 100 and 800 accession samples, were analyzed based on characteristics such as population stratification, number of duplicate genotypes and genetic diversity. Furthermore, the statistical power for an association study was investigated as a key criterion for comparisons. While sampling extreme phenotypes boosts the power especially for smaller core collections of up to 500 accession samples, maximization of genetic diversity within the core collection minimizes population stratification and avoids the accumulation of less informative duplicate genotypes when increasing the size of a core collection. Advantages and limitations of different strategies to create trait-customized core collections are discussed for different scenarios of the availability of resources and data.

Optimized nitrogen and potassium fertilizers application increases stem lodging resistance and grain yield of oil flax by enhancing lignin biosynthesis

The lodging issue is a significant factor that hinders the enhancement of oil flax production efficiency in northern China. Crop lodging or not, and lignin content in the stems are closely related, and how nitrogen fertilizer and potassium fertilization interaction regulate lignin biosynthesis in the stems of oil flax requires further in-depth study. Therefore, the research aims to enhance the lodging resistance and facilitate an increased yield of oil flax. We are examined the interaction of different nitrogen fertilizers (75, 150, and 225 kg N ha-1) and potassium fertilizers (60 and 90 kg K2O ha-1) on oil flax lignin metabolism, lodging resistance, and grain yield in 2022 and 2023 growing seasons. The results indicated that nitrogen and potassium fertilizer levels and their interaction treatments are facilitated lignin accumulation, achievement of lodging resistance and high yield. Compared to CK, the 75-150 kg N ha-1 in combination with 60 kg K2O ha-1 treatments significantly enhanced the enzyme activities (TAL, PAL, POD, and CAD) and the gene expressions (4CL1 and F5H3) for lignin syntheses, lignin content dramatically increased 29.63-43.30%, improved stem bending strength and lodging resistance index, and grain yield increased 23.27-32.34%. Correlation analysis indicated that nitrogen and potassium fertilizer positively regulated the relative enzyme activities and genes expression for lignin to facilitated lignin biosynthesis and accumulation, and enhanced stem bending strength and lodging resistance index. Positive correlations were found among the relative enzyme activities and gene expressions for lignin, lodging resistance and grain yield. To summarize, 75-150 kg N ha-1 in conjunction with 60 kg K2O ha-1 treatment was promoted to lignin biosynthesis and accumulation, enhanced the lodging resistance and grain yield of oil flax in the dryland farming region of central Gansu. Furthermore, it served as a technical guide for cultivating stress tolerance and high-yield oil flax in the dryland farming region.

Paclobutrazol Enhanced Stem Lodging Resistance of Direct-Seeded Rice by Affecting Basal Internode Development.

The objectives of this study were to explore the mechanism of stem mechanical strength in direct-seeded rice (DSR) as affected by paclobutrazol, especially its related endogenous hormone and cell wall component changes in culm tissue and response to the application of paclobutrazol. Field experiments were conducted in Changchun County, Jilin Province, China, by using two japonica rice varieties, Jiyujing and Jijing305, with soaking seeds in paclobutrazol at concentrations of (0 mg L-1, S0; 50 mg L-1; S1; 100 mg L-1; S2; 150 mg L-1, S3; 200 mg L-1, S4) in 2021 and 2022. The results suggest that the application of paclobutrazol increased the grain yield and reduced the lodging rate of DSR. Compared with the S0 treatments, soaking the seeds in paclobutrazol treatments rapidly shortened the length of the basal internode by decreasing the endogenous indole acetic acid (IAA) and gibberellin A3 (GA3) contents in culm tissue. The larger breaking strength (M) was attributed to a higher section modulus (SM) and bending stress (BS). The higher mechanical tissue thickness in culm tissue under paclobutrazol treatments, which was raised by higher endogenous zeatin and zeatin riboside (Z+ZR) content in culm tissue, increased the culm diameter, culm wall thickness, and section modulus (SM) of the internode. Compared with the S0 treatments, soaking the seeds in paclobutrazol treatments increased the cellulose content, lignin content, activities of lignin-related enzymes, and expression of key genes in lignin biosynthesis, as well as resulted in a higher bending stress (BS) to enhance the culm breaking strength (M).

Modelling the impact of cabbage stem flea beetle larval feeding on oilseed rape lodging risk.

Cabbage stem flea beetle (CSFB, Psylliodes chrysocephala L.) is a major pest of oilseed rape (OSR, Brassica napus L.) in the UK and low availability of effective chemical control has increased the need for integrated pest management approaches. The risk of OSR to lodging is strongly related to stem strength, however, the impact of CSFB larval tunnelling on stem strength and subsequent risk to stem lodging is unknown. The study investigated this by applying the Generalised Crop Lodging Model to conventionally grown OSR crops scored for varying levels of CSFB larval tunnelling. Lodging risk mitigation strategies including plant growth regulators (PGR) and varying nitrogen regimes were tested under high CSFB larval pressure. Stems of OSR plants were categorised by the proportion of visual damage (< 5%; 5-25%; 26-50%; 51-75%; 75-100%). Stems of 26-50% damage had significantly lower breaking strengths and diameters compared to plants that scored < 5%, with the associated reduction in stem failure windspeed equivalent to an order of magnitude increase in the risk of a lodging event occurring in the UK. PGR use reduced plant height and subsequently lodging risk variably across the sites. Estimating the proportion of stem tunnelling alongside larval pressure may be a useful tool in considering the contribution of CSFB pressure to lodging risk. The research demonstrates that the use of canopy management principles to optimise canopy size through nitrogen management and PGR use may help offset increased lodging risk caused by CSFB tunnelling. © 2024 Society of Chemical Industry.

Isolation and functional analysis of R2R3-MYB transcription factor PlMYB42 associated with stem strength in herbaceous peony

Lodging resistance is a vital agronomic trait of plants, which affects plant architecture, yield and quality. Herbaceous peony (Paeonia lactiflora Pall.) is considered a high-end cut flowers due to its unique color, pattern, and aroma of flowers, but the traditional cultivated varieties of P. lactiflora have stem lodging. Although several regulatory factors participated in stem development have been identified in other plants, few involved in P. lactiflora have been reported. Here, PlMYB42, a transcription factor isolated from P. lactiflora, was found associated with stem strength and belonged to R2R3-MYB subfamily. PlMYB42 was highly expressed in stems, and showed a rise trend along with stem development. PlMYB42 protein was located in the nucleus and exhibited transcriptional activation activity. Silence of PlMYB42 in P. lactiflora suppressed lignin accumulation and weakened stem strength, while overexpression of PlMYB42 in tobacco promoted stem lignification and increased stem strength. Expression levels of lignin biosynthesis related genes were significantly decreased in PlMYB42 silence lines. These results indicated that PlMYB42 might promote stem strength through lignin accumulation. This work would reveal the genetic basis of lignin accumulation and stem development in P. lactiflora, and provide new insights into plant stem development.

Stem lodging Resistance-1 controls stem strength by positively regulating the biosynthesis of cell wall components in Capsicum annuum L.

Lodging presents a significant challenge in cultivating high-yield crops with extensive above-ground biomass, yet the molecular mechanisms underlying this phenomenon in the Solanaceae family remain largely unexplored. In this study, we identified a gene, CaSLR1 (Capsicum annuum Stem Lodging Resistance 1), which encodes a MYELOBLASTOSIS (MYB) family transcription factor, from a lodging-affected C. annuum EMS mutant. The suppression of CaSLR1 expression in pepper led to notable stem lodging, reduced thickness of the secondary cell wall, and decreased stem strength. A similar phenotype was observed in tomato with the knockdown of SlMYB61, the orthologous gene to CaSLR1. Further investigations demonstrated that CaNAC6, a gene involved in secondary cell wall (SCW) formation, is co-expressed with CaSLR1 and acts as a positive regulator of its expression, as confirmed through yeast one-hybrid, dual-luciferase reporter assays, and electrophoretic mobility shift assays. These findings elucidate the CaNAC6-CaSLR1 module that contributes to lodging resistance, emphasizing the critical role of CaSLR1 in the lodging resistance regulatory network.

Genome-Wide Identification and Characterization of Lignin Synthesis Genes in Maize.

Lignin is a crucial substance in the formation of the secondary cell wall in plants. It is widely distributed in various plant tissues and plays a significant role in various biological processes. However, the number of copies, characteristics, and expression patterns of genes involved in lignin biosynthesis in maize are not fully understood. In this study, bioinformatic analysis and gene expression analysis were used to discover the lignin synthetic genes, and two representative maize inbred lines were used for stem strength phenotypic analysis and gene identification. Finally, 10 gene families harboring 117 related genes involved in the lignin synthesis pathway were retrieved in the maize genome. These genes have a high number of copies and are typically clustered on chromosomes. By examining the lignin content of stems and the expression patterns of stem-specific genes in two representative maize inbred lines, we identified three potential stem lodging resistance genes and their interactions with transcription factors. This study provides a foundation for further research on the regulation of lignin biosynthesis and maize lodging resistance genes.

The DEP1 Mutation Improves Stem Lodging Resistance and Biomass Saccharification by Affecting Cell Wall Biosynthesis in Rice

BackgroundPlant cell walls have evolved precise plasticity in response to environmental stimuli. The plant heterotrimeric G protein complexes could sense and transmit extracellular signals to intracellular signaling systems, and activate a series of downstream responses. dep1 (Dense and Erect Panicles 1), the gain-of-function mutation of DEP1 encoding a G protein γ subunit, confers rice multiple improved agronomic traits. However, the effects of DEP1 on cell wall biosynthesis and wall-related agronomic traits remain largely unknown.ResultsIn this study, we showed that the DEP1 mutation affects cell wall biosynthesis, leading to improved lodging resistance and biomass saccharification. The DEP1 is ubiquitously expressed with a relatively higher expression level in tissues rich in cell walls. The CRISPR/Cas9 editing mutants of DEP1 (dep1-cs) displayed a significant enhancement in stem mechanical properties relative to the wild-type, leading to a substantial improvement in lodging resistance. Cell wall analyses showed that the DEP1 mutation increased the contents of cellulose, hemicelluloses, and pectin, and reduced lignin content and cellulose crystallinity (CrI). Additionally, the dep1-cs seedlings exhibited higher sensitivity to cellulose biosynthesis inhibitors, 2,6-Dichlorobenzonitrile (DCB) and isoxaben, compared with the wild-type, confirming the role of DEP1 in cellulose deposition. Moreover, the DEP1 mutation-mediated alterations of cell walls lead to increased enzymatic saccharification of biomass after the alkali pretreatment. Furthermore, the comparative transcriptome analysis revealed that the DEP1 mutation substantially altered expression of genes involved in carbohydrate metabolism, and cell wall biosynthesis.ConclusionsOur findings revealed the roles of DEP1 in cell wall biosynthesis, lodging resistance, and biomass saccharification in rice and suggested genetic modification of DEP1 as a potential strategy to develop energy rice varieties with high lodging resistance.

QTL Mapping and Candidate Gene Mining for Stem Diameter Using Genetic Basis of Cultivated Soybean and Wild Soybean

Soybean (Glycine max) is a vital food crop, serving as a major source of high-quality protein for human and animal consumption. Stem diameter is one of the primary determinants of the stem lodging resistance of a given plant, but there has been relatively little research to date focused on genes associated with this trait. To address this gap in the literature, 207 chromosome segment substitution lines (CSSLs) were generated in the present study through the crossing and backcrossing of the improved Suinong14 and the wild ZYD00006 soybean varieties. These CSSLs were then used for the mapping of quantitative trait loci (QTLs) associated with stem diameter in two-year field planting materials, leading to the identification of nine QTLs. Whole genome resequencing, RNA-seq, and qPCR were then used to evaluate candidate genes associated with stem diameter within these QTL intervals, ultimately leading to the selection of Glyma.04G004100 as a stem diameter-related gene. Subsequent qPCR analyses revealed that Glyma.04g004100 was upregulated in soybean plants with larger stem diameters, and haplotype analyses yielded results consistent with these stem diameter data in the population used to conduct this study. In summary, a series of QTLs associated with stem diameter were identified in the present study, resulting in the establishment of Glyma.04g004100 as a stem diameter-related gene. Together, these results offer a theoretical foundation for the future molecular-assisted breeding of lodging-resistant soybean varieties, and future functional research focused on Glyma.04g004100 may elucidate the molecular mechanisms and key signaling networks involved in soybean stem development.

Unmanned aerial vehicles (UAVs)-based crop lodging susceptibility and seed yield assessment during different growth stages of rapeseed (Brassica napus)

Lodging is a great challenge in rapeseed production that significantly affects seed yield and quality. Prediction of lodging susceptibility and seed yield through unmanned aerial vehicles (UAVs)-based framework offers remarkable prospects for higher applicability in agriculture. This study aims to explore the possibility of using a UAV-based framework for predicting the stem and root lodging susceptibility (represented by safety factor, SFs and SFr respectively) and seed yield at different growth stages of rapeseed. The Red-Green-Blue (RGB) and multispectral (MS) images were captured during various growth stages by UAV platforms to calculate 16 vegetation indices (VIs). Furthermore, the relationships of these VIs with lodging susceptibility and seed yield were also established using multiple linear regression (MLR) and four machine learning methods (including random forest machine (RFR), support vector machine, artificial neural network, and K-nearest neighbors). The results revealed that MS-VIs provided a good estimation of seed yield, and stem and root lodging susceptibilities. Among the 16 VIs analyzed, MS-VI SR85 emerged as the best predictor for both seed yield and lodging susceptibility, as is evident by its highest importance scores. Furthermore, when RGB-VIs were coupled with MS-VIs, the R2 values for estimating seed yield, stem lodging and root lodging resistance were enhanced by 150%, 69.6% and 106%, respectively, in comparison with RGB-VIs. Similarly, the RFR provided a more accurate machine learning method for predicting seed yield and lodging susceptibility compared to the other three models. Stem elongation stage was the optimum growth stage for the estimation of seed yield, and stem and root lodging susceptibilities due to its maximum prediction accuracy, as is suggested by the highest R2 values. It can be inferred that a UAV-based framework in combination with RFR could serve as a high-throughput technique for large-scale prediction of lodging susceptibility and seed yield, as early as at stem elongation stage and thus provides an opportunity for timely agronomic intervention.

Variation and interrelationships in the growth, yield, and lodging of oat under different planting densities.

Oat is a dual-purpose cereal used for grain and forage. The demand of oat has been increasing as the understanding of the nutritional, ecological, and economic values of oat increased. However, the frequent lodging during the growing period severely affect the high yielding potential and the quality of the grain and forage of oat. Therefore, we used the lodging-resistant variety LENA and the lodging-sensitive variety QY2 as materials, implementing four different planting densities: 2.25×106 plants/ha (D1), 4.5×106 plants/ha (D2), 6.75×106 plants/ha (D3), and 9×106 plants/ha (D4). At the appropriate growth and development stages, we assessed agronomic traits, mechanical characteristics, biochemical compositions, yield and its components. The study investigated the impact of planting density on the growth, lodging, and yield of oat, as well as their interrelationships. Additionally, we identified the optimal planting density to establish a robust crop structure. The research aims to contribute to the high-yield and high-quality cultivation of oat. We observed that with increasing planting density, plant height, grass and grain yields of both varieties first increased and then decreased; root fresh weight, stem diameter, stem wall thickness, stem puncture strength, breaking strength, compressive strength, lignin and crude fiber contents, and yield components decreased; whereas the lodging rate and lodging coefficient increased. Planting density affects lodging by regulating plant height, height of center of gravity, stem wall thickness, internode length, and root fresh weight of oat. Additionally, it can impact stem mechanical strength by modulating the synthesis of lignin and crude fiber, which in turn affecting lodging resistance. Plant height, height of center of gravity, stem wall thickness, internode length, root fresh weight, breaking strength, compressive strength, lignin and crude fiber content, single-plant weight, grain yield and 1,000-grain weight can serve as important indicators for evaluating oat stem lodging resistance. We also noted that planting density affected grain yield both directly and indirectly (by affecting lodging); high density increased lodging rate and decreased grain yield, mainly by reducing 1,000-grain weight. Nonetheless, there was no significant relationship between lodging and grass yield. As appropriate planting density can increase the yield while maintaining good lodging resistance, in this study, 4.5×106 plants/ha (D2) was found to be the best planting density for oat in terms of lodging resistance and grass and grain yield. These findings can be used as a reference for oat planting.

Reducing nitrogen application at high planting density enhances secondary cell wall formation and decreases stem lodging in rapeseed

Reducing the rate of nitrogen fertilizer (N rate) and achieving high plant density is an effective and economically beneficial approach to enhance rapeseed productivity. However, it is unclear how N rate affects stem lodging in rapeseed directly-sown at high densities. In this study, the effect of different N rates on stem lodging at high plant density was examined in field trial and pot experiments using two modern hybrid rapeseed varieties, Fengyou520 (FY520) and Huayouza62 (HYZ62). Increasing N fertilizer from low level to adequate level significantly increased yield by 39% in FY520 and 43% in HYZ62. However, with elevated N yield increases were limited by an increase in stem lodging. At T1 (the first inflorescence branch below the apex has the first flowers open) phloroglucinol-HCl staining for lignin was weaker under high N (N4: 4 g N pot−1) compared with adequate N (N2: 2 g N pot−1), and was correlated with weaker stem strength. Differences in stem lignin were also associated with variations in gene expression as revealed by transcriptomic profiling of middle stems at T1. Differentially expressed genes indicated significant enrichment for cell wall. Several genes encoding known transcriptional regulators of secondary cell walls (SCWs) biosynthesis and deposition were down-regulated with high N compared with adequate N. Many genes putatively involved in lignin biosynthesis, cellulose biosynthesis and assembly and xylan biosynthesis are down-regulated with high N, corresponding to lower accumulation of lignin, cellulose and hemicellulose in these plants. These findings not only provide us with gene candidates potentially affecting stem lodging in direct sown rapeseed, but also reveal that reducing N at high plant density enhances biosynthesis of stem cell walls to alleviate stem lodging.

Optimal N fertilizer management method for improving maize lodging resistance and yields by combining controlled-release urea and normal urea

Despite being an efficient nitrogen (N) management method, the effects of controlled-release urea combined with normal urea (CRUNU) on stem and root lodging and yield in maize have been rarely reported. Therefore, we conducted a field trial for three years between 2020 and 2022 using two N fertilizer types (CRUNU and normal urea (NU)) and three N application levels (low: 135 kg N ha–1; medium: 180 kg N ha–1; and high: 225 kg N ha–1) to evaluate their effects on stem and root lodging and the yield in maize, and the factors involved. The results showed that, compared with NU, CRUNU reduced the stem and root lodging rate under the three N application rates, and all were lowest under the medium N application rate. The decreased stem and root lodging rate was mainly attributed to the improved the synchronization of nitrogen supply and demand, reduced population traits (plant height, ear height, and center of gravity height), improved morphological traits (length and mass density) for the basal second, third, and fourth internodes (I2, I3, and I4), increased mechanical properties (stem breaking strength and rind penetration strength), greater stem lodging resistance index (SLRI), enhanced chemical compositions (lignin and its related synthetase activities, cellulose, and hemicellulose) in I2, I3, and I4, and increases in the stem bending strength, root average diameter, and vertical root-pulling resistance under CRUNU. In addition, the SLRI values for different internodes followed the order of: I2 > I3 > I4, thereby indicating that I2 and I3 played important roles in stem lodging resistance. Furthermore, compared with NU, the maize grain yield increased by 1.27–44.83% under CRUNU with the three N application rates. In particular, there was no significant difference in the grain yield between the high and medium N application rates under CRUNU. In conclusion, CRUNU combined with N application at a rate of 180 kg ha–1 may be a superior N fertilizer management method.

Optimizing nitrogen management can improve stem lodging resistance and stabilize grain yield of japonica rice in rice-crayfish coculture systems

Nitrogen (N) is a major factor affecting rice yield and lodging resistance. Previous studies have primarily investigated the impact of N management on rice lodging in conventional rice monoculture (RM); however, few studies have performed such investigations in rice-crayfish coculture (RC). We hypothesized that RC would increase rice lodging risk and that optimizing N application practices would improve rice lodging resistance without affecting food security. We conducted a two-factor (rice farming mode and N management practice) field experiment from 2021 to 2022 to test our hypothesis. The rice farming modes included RM and RC, and the N management practices included no nitrogen fertilizer, conventional N application, and optimized N treatment. The rice yield and lodging resistance characteristics, such as the morphology, mechanical and chemical characteristics, anatomic structure, and gene expression levels, were analysed and compared among the different treatments. Under the same N application practice, RC decreased the rice yield by 11.1–24.4% and increased the lodging index by 19.6–45.6% compared with the values yielded in RM. In RC, optimized N application decreased the plant height, panicle neck node height, centre of gravity height, bending stress, and lodging index by 4.0–4.8%, 5.2–7.8%, 0.5–4.5%, 5.5–10.5%, and 1.8–19.5% compared with those in the conventional N application practice, respectively. Furthermore, it increased the culm diameter, culm wall thickness, breaking strength, and non-structural and structural carbohydrate content by 0.8–4.9%, 2.2–53.1%, 13.5–19.2%, 2.2–24.7%, and 31.3–87.2%, respectively. Optimized N application increased sclerenchymal and parenchymal tissue areas of the vascular bundle at the culm wall of the base second internode. Furthermore, optimized N application upregulated genes involved in lignin and cellulose synthesis, thereby promoting lower internodes on the rice stem and enhancing lodging resistance. Optimized N application in RC significantly reduced the lodging index by 1.8–19.5% and stabilized the rice yield (>8,570 kg ha–1 on average). This study systematically analysed and compared the differences in lodging characteristics between RM and RC, and these findings will aid in the development of more efficient practices for RC that will reduce N fertilizer application.

Raman developmental markers in root cell walls are associated with lodging tendency in tef

Main conclusionUsing Raman micro-spectroscopy on tef roots, we could monitor cell wall maturation in lines with varied genetic lodging tendency. We describe the developing cell wall composition in root endodermis and cylinder tissue.Tef [Eragrostis tef (Zucc.) Trotter] is an important staple crop in Ethiopia and Eritrea, producing gluten-free and protein-rich grains. However, this crop is not adapted to modern farming practices due to high lodging susceptibility, which prevents the application of mechanical harvest. Lodging describes the displacement of roots (root lodging) or fracture of culms (stem lodging), forcing plants to bend or fall from their vertical position, causing significant yield losses. In this study, we aimed to understand the microstructural properties of crown roots, underlining tef tolerance/susceptibility to lodging. We analyzed plants at 5 and 10 weeks after emergence and compared trellised to lodged plants. Root cross sections from different tef genotypes were characterized by scanning electron microscopy, micro-computed tomography, and Raman micro-spectroscopy. Lodging susceptible genotypes exhibited early tissue maturation, including developed aerenchyma, intensive lignification, and lignin with high levels of crosslinks. A comparison between trellised and lodged plants suggested that lodging itself does not affect the histology of root tissue. Furthermore, cell wall composition along plant maturation was typical to each of the tested genotypes independently of trellising. Our results suggest that it is possible to select lines that exhibit slow maturation of crown roots. Such lines are predicted to show reduction in lodging and facilitate mechanical harvest.

An integrated QTL mapping and transcriptome sequencing provides further molecular insights and candidate genes for stem strength in rapeseed (Brassica napus L.).

We detected the major QTL- qSR.A07, which regulated stem strength and was fine-mapped to 490 kb. BnaA07G0302800ZS and BnaA07G0305700ZS as the candidate functional genes were identified at qSR.A07 locus. The stem's mechanical properties reflect its ability to resist lodging. In rapeseed (Brassica napus L.), although stem lodging negatively affects yield and generates harvesting difficulties, the molecular regulation of stem strength remains elusive. Hence, this study aimed to unravel the main loci and molecular mechanisms governing rapeseed stem strength. A mapping population consisting of 267 RILs (recombinant inbred lines) was developed from the crossed between ZS11 (high stem strength) and 4D122 (low stem strength), and two mechanical properties of stems including stem breaking strength and stem rind penetrometer resistance were phenotyped in four different environments. Four pleiotropic QTLs that were stable in at least two environments were detected. qSR.A07, the major one, was fine-mapped to a 490kb interval between markers SA7-2711 and SA7-2760 on chromosome 7. It displayed epistatic interaction with qRPR.A09-2. Comparative transcriptome sequencing and analysis unveiled methionine/S-adenosylmethionine cycle (Met/SAM cycle), cytoskeleton organization, sulfur metabolism and phenylpropanoid biosynthesis as the main pathways associated with high stem strength. Further, we identified two candidate genes, BnaA07G0302800ZS and BnaA07G0305700ZS, at qSR.A07 locus. Gene sequence alignment identified a number of InDels, SNPs and amino acid variants in sequences of these genes between ZS11 and 4D122. Finally, based on these genetic variants, we developed three SNP markers of these genes to facilitate future genetic selection and functional studies. These findings offer important genetic resources for the molecular-assisted breeding of novel rapeseed stem lodging-resistant varieties.

Genome-Wide Association Analysis Unravels New Quantitative Trait Loci (QTLs) for Eight Lodging Resistance Constituent Traits in Rice (Oryza sativa L.).

Lodging poses a significant challenge to rice yield, prompting the need to identify elite alleles for lodging resistance traits to improve cultivated rice varieties. In this study, a natural population of 518 rice accessions was examined to identify elite alleles associated with plant height (PH), stem diameter (SD), stem anti-thrust (AT/S), and various internode lengths (first (FirINL), second (SecINL), third (ThirINL), fourth (ForINL), and fifth (FifINL) internode lengths). A total of 262 SSR markers linked to these traits were uncovered through association mapping in two environmental conditions. Phenotypic evaluations revealed striking differences among cultivars, and genetic diversity assessments showed polymorphisms across the accessions. Favorable alleles were identified for PH, SD, AT/S, and one to five internode lengths, with specific alleles displaying considerable effects. Noteworthy alleles include RM6811-160 bp on chromosome 6 (which reduces PH) and RM161-145 bp on chromosome 5 (which increases SD). The study identified a total of 42 novel QTLs. Specifically, seven QTLs were identified for PH, four for SD, five for AT/S, five for FirINL, six for SecINL, five for ThirINL, six for ForINL, and four for FifINL. QTLs qAT/S-2, qPH2.1, qForINL2.1, and qFifINL exhibited the most significant phenotypic variance (PVE) of 3.99% for the stem lodging trait. AT/S, PH, ForINL, and FifINL had additive effects of 5.31 kPa, 5.42 cm, 4.27 cm, and 4.27 cm, respectively, offering insights into eight distinct cross-combinations for enhancing each trait. This research suggests the potential for crossbreeding superior parents based on stacked alleles, promising improved rice cultivars with enhanced lodging resistance to meet market demands.

Genetic analyses and prediction for lodging‑related traits in a diverse Iranian hexaploid wheat collection

Lodging is one of the most important limiting environmental factors for achieving the maximum yield and quality of grains in cereals, including wheat. However, little is known about the genetic foundation underlying lodging resistance (LR) in wheat. In this study, 208 landraces and 90 cultivars were phenotyped in two cropping seasons (2018–2019 and 2019–2020) for 19 LR-related traits. A genome-wide association study (GWAS) and genomics prediction were carried out to dissect the genomic regions of LR. The number of significant marker pairs (MPs) was highest for genome B in both landraces (427,017) and cultivars (37,359). The strongest linkage disequilibrium (LD) between marker pairs was found on chromosome 4A (0.318). For stem lodging-related traits, 465, 497, and 478 marker-trait associations (MTAs) and 45 candidate genes were identified in year 1, year 2, and pooled. Gene ontology exhibited genomic region on Chr. 2B, 6B, and 7B control lodging. Most of these genes have key roles in defense response, calcium ion transmembrane transport, carbohydrate metabolic process, nitrogen compound metabolic process, and some genes harbor unknown functions that, all together may respond to lodging as a complex network. The module associated with starch and sucrose biosynthesis was highlighted. Regarding genomic prediction, the GBLUP model performed better than BRR and RRBLUP. This suggests that GBLUP would be a good tool for wheat genome selection. As a result of these findings, it has been possible to identify pivotal QTLs and genes that could be used to improve stem lodging resistance in Triticum aestivum L.