In this series of papers we aim to provide a mathematically comprehensive framework to the Hamiltonian pictures of quantum field theory in curved spacetimes. Our final goal is to study the kinematics and the dynamics of the theory from the point of differential geometry in infinite dimensions. In this second part we use the tools of Gaussian analysis in infinite dimensional spaces introduced in the first part to describe rigorously the procedures of geometric quantization in the space of Cauchy data of a scalar theory. This leads us to discuss and establish relations between different pictures of QFT. We also apply these tools to describe the geometrization of the space of pure states of quantum field theory as a Kähler manifold. We use this to derive an evolution equation that preserves the geometric structure and avoid norm losses in the evolution. This leads us to a modification of the Schrödinger equation via a quantum connection that we discuss and exemplify in a simple case.
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