This study assessed the mechanism of miR-125b-5p carried with albumin nanoparticles on injured nerve cells in ischemia-reperfusion cerebral injury. 50 rats were assigned into control set, model set, miR-125b-5p set, IL-6/STAT3 agonist set, and positive control set. The score of neurological impairment, cerebral infarction volume, cerebral water content, apoptosis index of brain cells, synaptic ultrastructure, miR-125b-5p expression, level of IL-6/STAT3 pathway factors, targeting correlation between miR-125b-5p and IL-6 were observed. There was a good dispersibility and uniform size in albumin nanoparticles with an average particle size of 15.5 nanometer. The neurological impairment, cerebral infarction volume, cerebral water content, apoptosis index of brain cells in model set and IL-6/STAT3 agonist set were the highest followed by miR-125b-5p set and positive control set. The level of inflammatory reaction in model set and IL-6/STAT3 agonist set were the highest and oxidative stress were the lowest. miR-125b-5p carried with albumin nanoparticles could directly target on IL-6. The phosphorylation level of IL-6 and STAT3 could be restrained. The activity of IL-6/STAT3 signal pathway could be inhibited, leading to restrained inflammation and oxidative stress in nervous system and reduced cerebral water content, therefore protecting nerve cells. The mechanism might be related with restrained IL-6/STAT3 pathway.