Stages Of Seedling Establishment Research Articles

Evaluation of barley genotypes for drought adaptability: based on stress indices and comprehensive evaluation as criteria.

The prevalence of drought events worldwide emphasizes the importance of screening and cultivating drought-adapted crops. In this study, 206 germplasm resources were used as materials, dry weight as target trait, and two genotyping methods as criteria to evaluate drought adaptability at the seedling establishment stage. The results showed a significant decrease in average dry weight of the tested germplasm resources (from 746.90 mg to 285.40 mg) and rich variation in the responses of dry weight among each genotype to drought (CV=61.14%). In traditional evaluation method, drought resistance coefficient (DC), geometric mean productivity index (GMP), mean productivity index (MP), stress susceptibility index (SSI), stress tolerance index (STI), and tolerance index (TOL) also exhibited diversity in tested genotypes (CV>30%). However, these indices showed varying degrees of explanation for dry weight under stress and non-stress environments and failed to differentiate drought adaptability among genotypes clearly. In new evaluation method, four stress indices were developed to quantify barley seedling production and stability capacities. Compared to traditional stress indices, the stress production index (SI) explained dry weight more comprehensively under stress conditions (R2 = 0.98), while the ideal production index (II) explained dry weight better under non-stress conditions (R2 = 0.89). Furthermore, the potential index (PI) and elasticity index (EI) eliminated disparities in traditional stress indices and comprehensively clarified the contribution of elasticity and potential to production capacity under drought stress. Ultimately, through grading evaluation and cluster analysis, the tested germplasm resources were effectively categorized, and 11 genotypes were identified as suitable for cultivation in arid areas. Overall, the comprehensive evaluation method based on the newly developed stress indices surpasses the traditional method in screening drought adaptability of crops and serves as a vital tool for identifying high-stability and high-production capacities genotypes in various environments, which is expected to provide practical guidance for barley planting and breeding in arid areas.

Flooding Tolerance of Rice: Regulatory Pathways and Adaptive Mechanisms.

Rice is a major food crop for more than half of the world's population, while its production is seriously threatened by flooding, a common environmental stress worldwide. Flooding leads to oxygen deficiency, which is a major problem for submerged plants. Over the past three decades, significant progress has been made in understanding rice adaptation and molecular regulatory mechanisms in response to flooding. At the seed germination and seedling establishment stages, the CIPK15-SnRK1A-MYBS1 signaling cascade plays a central role in determining rice submergence tolerance. However, from seedlings to mature plants for harvesting, SUB1A- and SK1/SK2-regulated pathways represent two principal and opposite regulatory mechanisms in rice. In addition, phytohormones, especially gibberellins, induce adaptive responses to flooding throughout the rice growth period. This review summarizes the significant adaptive traits observed in flooded rice varieties and updates the molecular genetics and mechanisms of submergence tolerance in rice.

Combined Analysis of Untargeted Metabolomics and Transcriptomics Revealed Seed Germination and Seedling Establishment in Zelkova schneideriana.

Zelkova schneideriana Hand.-Mazz is a valuable ornamental tree and timber source, whose seedling breeding and large-scale cultivation are restricted by low seed germination and seedling rates. The regulatory mechanisms underlying seed germination and seedling establishment in Z. schneideriana remain unknown. This study conducted metabolomic and transcriptomic analyses of seed germination and seedling establishment in Z. schneideriana. Regular expression of genes and metabolite levels has been observed in plant hormone signal transduction, starch and sucrose metabolism, linoleic acid metabolism, and phenylpropanoid biosynthesis. The reduction in abscisic acid during seed germination may lead to seed release from dormancy. After the seed is released from dormancy, the metabolic levels of auxin, cytokinins, brassinolide, and various sugars are elevated, and they are consumed in large quantities during the seedling establishment stage. Linoleic acid metabolism is gradually activated during seedling establishment. Transcriptome analysis showed that a large number of genes in different metabolic pathways are upregulated during plant establishment, and material metabolism may be accelerated during seedling establishment. Genes regulating carbohydrate metabolism are altered during seed germination and seedling establishment, which may have altered the efficiency of carbohydrate utilization. In addition, the syntheses of lignin monomers and cellulose have different characteristics at different stages. These results provide new insights into the complex mechanisms underlying seed germination and seedling establishment in Z. schneideriana and other woody plants.

Herbicide-tolerant sesame (Sesamum indicum L.) genotypes: Identification andprospects for molecular characterization

Weed is a major menace in the early seedling establishment stage and hand-weeding is an uneconomical practice in sesame crop production. Herbicide-tolerance in sesame empowers chemical method of weed control in sesame. In the present study, three genotypes each of the tolerant and susceptible lines, identified under field condition, were screened under controlled condition, using a completely randomized design (CRD), for their differential responses to pendimethalin application at field dosage (750 g/ha). Nucleotide sequences of both target and non-target sites for the herbicide reported in other plant species were used for fetching sesame orthologues and molecular analyses were performed using in silico approaches. Herbicide-tolerant sesame genotypes viz., IC132558, IC131953, and IC1500445, identified in this study help not only understand the underlying molecular mechanism(s) but also serve as germplasm resources useful in breeding herbicide-tolerance in sesame.

Differences in the Physiological Indicators of Seed Germination and Seedling Establishment of Durum Wheat (Triticum durum Desf.) Cultivars Subjected to Salinity Stress

To investigate the effects of salinity stress on durum wheat cultivars at the critical stages of germination and seedling establishment under salinity stress, a study was conducted on eight durum wheat cultivars (Karim, Khiar, Inrat100, Maali, Monastir, Portodur, Razeg, and Salim) subjected to an increasing salinity concentration by using sodium chloride (NaC) (0, 2, 4, 6, and 10 g L−1). Germination and seedling physiological parameters were measured and thoroughly analyzed. Salinity stress significantly decreased germination capacity (GC), germination rate (GR), final germination capacity (FGC), germination index (GI), mean daily germination (MDG), and velocity coefficient (Vc), whereas mean germination time (MGT) and the stress index (SI) increased. Plantlet growth and initial vigor (IV) were also significantly hampered. Regarding all these traits, the cultivars’ differences were revealed: Karim and Salim were the least affected, whereas Razeg and Maali were the most affected, and the other cultivars occupied an intermediate position. Depending on cultivar, salinity stress decreased the germination capacity and delayed its initiation. At low salinity stress (2–4 g L−1 NaCl), the osmotic effect (OE) was the main cause of germination inhibition, whereas at high salinity stress (6–10 g L−1 NaCl), the toxic effect (TE) dominated and irreversibly inhibited the germination process. The initial vigor and the stress index that clearly discriminate among the studied cultivars are useful traits for screening tolerant genotypes. Otherwise, durum wheat showed a higher plasticity with salinity at the germination stage, allowing it to develop better tolerance at this stage, as compared to early stage plantlet growth.

Microgeographic variation in early fitness traits of Pinus sylvestris from contrasting soils.

The possibility of fine-scale intraspecific adaptive divergence under gene flow is established by theoretical models and has been confirmed empirically in tree populations distributed along steep altitudinal clines or across extreme edaphic discontinuities. However, the possibility of microgeographic adaptive divergence due to less severe but more frequent kinds of soil variation is unclear. In this study, we looked for evidence of local adaptation to calcareous versus siliceous soil types in two nearby Mediterranean Pinus sylvestris populations connected via pollen flow. Using a greenhouse experiment, we tested for variation in early (up to three years of age) seedling performance among open-pollinated maternal families originating from each edaphic provenance when experimentally grown on both types of natural local substrate. Although seedlings were clearly affected by the edaphic environment, exhibiting lower and slower emergence as well as higher mortality on the calcareous than in the siliceous substrate, neither the performance on each substrate nor the plasticity among substrates varied significantly with seedling edaphic provenance. We found no evidence of local adaptation to a non-extreme edaphic discontinuity over a small spatial scale, at least during early stages of seedling establishment. Future studies on microgeographic soil-driven adaptation should consider long-term experiments to minimize maternal effects and allow a potentially delayed expression of edaphic adaptive divergence.

Global Decrease in H3K9 Acetylation in Sorghum Seed Postgermination Stages.

Sorghum seed germination is accompanied by increases in nutrient contents and reduced levels of antinutrients and is therefore being applied to food processing. However, the characterization of acetylated histone H3 at lysine residue 9 (H3K9ac) in sorghum postgermination has lagged. In this study, we performed chromatin immunoprecipitation sequencing (ChIP-seq) to identify H3K9ac enrichment and obtained transcriptome in postgermination stages. More than 10,000 hypoacetylated genes gained H3K9ac marks in the postgermination stages. In addition, we observed that the expression of the main histone deacetylase (HDAC) genes was elevated. The application of the HDAC inhibitor trichostatin A (TSA) resulted in seed growth arrest, suggesting that the repression of the H3K9ac modification is critical for postgermination. Additionally, we obtained a comprehensive view of abundant genomic changes in H3K9ac-marked regions and transcription between the mock and TSA treatment groups, which suggested that H3K9ac was required in the late stage of autotrophic seedling establishment. Metabolic profiling, transcriptome analyses, and ChIP-seq revealed that H3K9ac is enriched at genes involved in phenylpropanoid, including lignin and flavonoid, biosynthesis. Our results suggest important roles of H3K9ac in sorghum seed postgermination stages.

Siphoning novel sources of seedling salinity tolerance from the diverse chickpea landraces

Context Chickpea (Cicer arietinum L.) are highly sensitive to elevated salinity, particularly at initial seedling establishment stage. Seedling screening would be an effective means to identify novel sources of donors for salt tolerance. Aim This study aimed to identify salt stress tolerant genotypes at seedling stage from 50 chickpea accessions. Methods The screening of 50 chickpea accessions was done under two salinity conditions including salt stress (8 dS m−1) and control (no salt stress). Accessions were studied for morphological traits, root system architectural analysis, and CSTI (Cumulative salt tolerance index). Further, principal component analysis was conducted to validate these results for more accuracy and reliability. Key results For morphological traits, a high degree of genetic variation was seen among genotypes, and root traits were found to be the better indicators of salt stress tolerance. CSTI was used to classify the accessions; 22 (44%) were identified as salt sensitive, 21 (42%) were found to be moderately salt tolerant, and 7 (14%) had moderate to high salt tolerance. The most salt tolerant and salt sensitive genotypes were found to be ICCV10 and ILC5595, respectively. Conclusions Early seedling screening has a great potential to identify genotypes with robust root systems, which can withstand salinity. Implications We used a novel approach to classify chickpea landraces based on the combination of CSTI and principal component analysis methods. By choosing suitable donors and prospective genotypes at early growth stages, the knowledge gathered from this study may aid scientists and chickpea breeders in developing salt tolerant cultivars.

DEMETHYLATION REGULATOR 1 regulates DNA demethylation of the nuclear and mitochondrial genomes.

Active DNA demethylation effectively modulates gene expression during plant development and in response to stress. However, little is known about the upstream regulatory factors that regulate DNA demethylation. We determined that the demethylation regulator 1 (demr1) mutant exhibits a distinct DNA methylation profile at selected loci queried by methylation-sensitive polymerase chain reaction and globally based on whole-genome bisulfite sequencing. Notably, the transcript levels of the DNA demethylase gene REPRESSOR OF SILENCING 1 (ROS1) were lower in the demr1 mutant. We established that DEMR1 directly binds to the ROS1 promoter in vivo and in vitro, and the methylation level in the DNA methylation monitoring sequence of ROS1 promoter decreased by 60% in the demr1 mutant. About 40% of the hyper-differentially methylated regions (DMRs) in the demr1 mutant were shared with the ros1-4 mutant. Genetic analysis indicated that DEMR1 acts upstream of ROS1 to positively regulate abscisic acid (ABA) signaling during seed germination and seedling establishment stages. Surprisingly, the loss of DEMR1 function also caused a rise in methylation levels of the mitochondrial genome, impaired mitochondrial structure and an early flowering phenotype. Together, our results show that DEMR1 is a novel regulator of DNA demethylation of both the nuclear and mitochondrial genomes in response to ABA and plant development in Arabidopsis.

Epigenetics for crop adaptation to climate change

Epigenetics for crop adaptation to climate change

Impact of High Temperature on Germination, Seedling Growth and Enzymatic Activity of Wheat

Global warming has increased the temperature significantly over a large extent both spatially and temporally. The threat of heat stress during the germination and seedling establishment stages in the wheat crop is now more prevalent than ever before. The present experiment assessed the effect of elevated temperature on the germination and early seedling growth of wheat genotypes. The seeds were sown under four temperatures, viz., 20 °C, 25 °C, 30 °C and 35 °C; the germination, seedling vigor and enzyme activities in 8-day-old seedlings were assessed. The temperature significantly influenced germination and early seedling growth. The germination percentage at 20 and 25 °C was statistically on par with and higher than at 30 and 35 °C. The seedling vigor parameters were maximum at 25 °C and showed a reduction at higher temperatures. Genotypic differences were observed for early heat stress as the genotypes WH 730, WH 1123 and HD 2967 showed tolerance towards heat stress during germination, whereas the genotypes PBW 725 and WH 1105 were susceptible. Antioxidant enzyme activities in seedlings increased with the rise in temperature. Catalase, peroxidase and superoxide dismutase enzymes showed increased activities at higher temperature levels.

Tissue-targeted inorganic pyrophosphate hydrolysis in a fugu5 mutant reveals that excess inorganic pyrophosphate triggers developmental defects in a cell-autonomous manner.

Excess PPi triggers developmental defects in a cell-autonomous manner. The level of inorganic pyrophosphate (PPi) must be tightly regulated in all kingdoms for the proper execution of cellular functions. In plants, the vacuolar proton pyrophosphatase (H+-PPase) has a pivotal role in PPi homeostasis. We previously demonstrated that the excess cytosolic PPi in the H+-PPase loss-of-function fugu5 mutant inhibits gluconeogenesis from seed storage lipids, arrests cell division in cotyledonary palisade tissue, and triggers a compensated cell enlargement (CCE). Moreover, PPi alters pavement cell (PC) shape, stomatal patterning, and functioning, supporting specific yet broad inhibitory effects of PPi on leaf morphogenesis. Whereas these developmental defects were totally rescued by the expression of the yeast soluble pyrophosphatase IPP1, sucrose supply alone canceled CCE in the palisade tissue but not the epidermal developmental defects. Hence, we postulated that the latter are likely triggered by excess PPi rather than a sucrose deficit. To formally test this hypothesis, we adopted a spatiotemporal approach by constructing and analyzing fugu5-1 PDF1pro::IPP1, fugu5-1 CLV1pro::IPP1, and fugu5-1 ICLpro::IPP1, whereby PPi was removed specifically from the epidermis, palisade tissue cells, or during the 4 days following seed imbibition, respectively. It is important to note that whereas PC defects in fugu5-1 PDF1pro::IPP1 were completely recovered, those in fugu5-1 CLV1pro::IPP1 were not. In addition, phenotypic analyses of fugu5-1 ICLpro::IPP1 lines demonstrated that the immediate removal of PPi after seed imbibition markedly improved overall plant growth, abolished CCE, but only partially restored the epidermal developmental defects. Next, the impact of spatial and temporal removal of PPi was investigated by capillary electrophoresis time-of-flight mass spectrometry (CE-TOF MS). Our analysis revealed that the metabolic profiles are differentially affected among all the above transgenic lines, and consistent with an axial role of central metabolism of gluconeogenesis in CCE. Taken together, this study provides a conceptual framework to unveil metabolic fluctuations within leaf tissues with high spatio–temporal resolution. Finally, our findings suggest that excess PPi exerts its inhibitory effect in planta in the early stages of seedling establishment in a tissue- and cell-autonomous manner.

Seed Transmission of Pathogens: Non-Canonical Immune Response in Arabidopsis Germinating Seeds Compared to Early Seedlings against the Necrotrophic Fungus Alternaria brassicicola.

The transmission of seed-borne pathogens by the germinating seed is responsible for major crop diseases. The immune responses of the seed facing biotic invaders are poorly documented so far. The Arabidopsis thaliana/Alternaria brassicicola patho-system was used to describe at the transcription level the responses of germinating seeds and young seedling stages to infection by the necrotrophic fungus. RNA-seq analyses of healthy versus inoculated seeds at 3 days after sowing (DAS), stage of radicle emergence, and at 6 and 10 DAS, two stages of seedling establishment, identified thousands of differentially expressed genes by Alternaria infection. Response to hypoxia, ethylene and indole pathways were found to be induced by Alternaria in the germinating seeds. However, surprisingly, the defense responses, namely the salicylic acid (SA) pathway, the response to reactive oxygen species (ROS), the endoplasmic reticulum-associated protein degradation (ERAD) and programmed cell death, were found to be strongly induced only during the latter post-germination stages. We propose that this non-canonical immune response in early germinating seeds compared to early seedling establishment was potentially due to the seed-to-seedling transition phase. Phenotypic analyses of about 14 mutants altered in the main defense pathways illustrated these specific defense responses. The unexpected germination deficiency and insensitivity to Alternaria in the glucosinolate deficient mutants allow hypothesis of a trade-off between seed germination, necrosis induction and Alternaria transmission to the seedling. The imbalance of the SA and jasmonic acid (JA) pathways to the detriment of the JA also illustrated a non-canonical immune response at the first stages of the seedling.

Herbivory Rather than Root Competition and Environmental Factors Determines Plant Establishment in Fragmented Forests

In fragmented forests, many factors can affect plant community establishment, including abiotic factors, below-ground root competition, aboveground seed predation, and seedling herbivory. Little is known about the relative effects of biotic and abiotic factors affecting the initial stage of seedling establishment: seed gemmation and early seedling survival. Here, we carried out a root competition exclusion experiment and a herbivory (including seed predation) exclusion experiment on 11 islands in Thousand Island Lake, China, using four native woody plant species that differed in functional traits (e.g., seed mass and dominance). The dominant species on islands showed the highest seedling survival, and there was no significant linear relationship between the proportion of surviving seedlings and island area under either treatment for any species. Compared to the control and excluding root competition treatments, excluding seed predation and herbivory significantly increased seedling survival after controlling for the environmental factors. However, abiotic factors had no effect on early seedling establishment. Our results suggest that seedling regeneration of rare species in fragmented ecosystems may be limited and that seedlings may be more susceptible to predators and herbivores in fragmented ecosystems. These results have significant implications for the conservation of plant diversity in fragmented forests.

Seed dispersal mechanism of Erythronium japonicum in Northeast China

Seed dispersal is recognized as a very important stage in the life history of plant sexual reproduction. Seed dispersal directly determines whether plant seeds can reach the favorable germination sites and ensure the successful germination of seeds subsequently which is the first stage of plant seedling establishment. The final dispersal location of seeds with diplochory usually requires the joint decision of two stages including primary seed dispersal and secondary seed dispersal. The seed dispersal of Erythronium japonicum by ants was investigated in three different habitats. The effect of seed maturity on seed fate and the effects of elaiosome removal and water immersion on seed dispersal in the wild were studied. The results showed that eight species of ants were involved in E. japonicum seed dispersal in the three habitats. The seed handling efficiency and the number of seeds transported by ants were affected by the composition of ant community and the size of ant population. There was a strong correlation between the seed dispersal distance and the body length of ants. Small ants may have expanded their foraging range through fierce struggle. The immature E. japonicum seeds will also be handling by ants, indicating that the seed elaiosome mature prior to seeds. We found elaiosome plays an important role in the dispersal of E. japonicum seeds, and it can also be used as a “handle point” for smaller ants. The components of elaiosome are not easily soluble in water, which can avoid the loss of the attraction of E. japonicum seeds to ants due to the rain during the seed dispersal process.

Effect of Gibberellic Acid and Silicon at Germination and Seedling Growth of Triticum Aestivum Grown under Salinity

Different abiotic stresses create noticeable changes in plant growth and development and plant under such condition reduced its yield. Different ions and growth regulators are very important and play key role for creation of stress tolerance in plants. This project was proposed to evaluate the performance of gibberellic acid and silicon on germination and seedling establishment stage of wheat under salinity. Experiment was completely randomized design, in which seeds were sown in petri plates, which were irrigated with different concentration of NaCl (control, 50mM and 150mM), GA3 (50ppm and 100ppm), silicon (5mM and 10mM) and combination of silicon and GA3 (50ppm GA3 x 5 mM Si and 100ppmGA3 x 10 mM Si). After 7 days experiment was terminated and shoot length, root length, fresh weight, dry weight, vigor index, RWC, RSR, SWR and RWR were measured. Shoot length, root length, Fresh weight and dry weight, Vigor index, RWC, SWR, RWR and different physiological indices were reduced with increasing salt (50mM and 150mM) as compare to control. Result indicated that different concentration of salt significantly increased RSR as compare to control plant. Further investigations revealed that under non-saline conditions application of GA3, silicon, and interactions showed increase in studied parameters except vigor index, RWR which decreased after foliar applications as compare to without GA3 and silicon applied plants. Additionally, under saline conditions foliar applications of GA3, silicon and interactions increase root length, shoot length, fresh and dry weight, RSR, RWR, SWR and stress tolerance indices. Consequently, the results suggested that these chemicals under studied doses can act as an effective strategy to cope up the deleterious effects of salt in wheat at germination and seedling growth stages.

Hydraulic-stomatal coordination in tree seedlings: tight correlation across environments and ontogeny in Acer pseudoplatanus.

Hydraulic conductance is recognized as a major determinant of gas exchange and productivity. However, whether this also applies to seedlings, a critically important stage for vegetation regeneration, has been largely unknown. We analyzed the hydraulic and stomatal conductance of leaves and shoots for 6-wk-old Acer pseudoplatanus seedlings emerging in different lowland and treeline habitats and under glasshouse conditions, respectively, as well as on 9-, 15- and 18-wk-old plants, and related findings to leaf and xylem anatomical traits. Treeline seedlings had higher leaf area-specific shoot hydraulic conductance (Kshoot-L ), and stomatal conductance (gs ), associated with wider xylem conduits, lower leaf area and higher stomatal density than lowland and glasshouse-grown plants. Across the first 18 wk of development, seedlings increased four-fold in absolute shoot hydraulic conductance (Kshoot ) and declined by half in Kshoot-L , with correlated shifts in xylem and leaf anatomy. Distal leaves had higher leaf hydraulic conductance (Kleaf ) and gs compared to basal leaves. Seedlings show strong variation across growth environments and ontogenetic shifts in hydraulic and anatomical parameters. Across growth sites, ontogenetic stages and leaf orders, gs was tightly correlated with Kshoot-L and Kleaf , balancing hydraulic supply with demand for the earliest stages of seedling establishment.

Benefit versus cost trade‐offs of masting across seed‐to‐seedling transition for a dominant subtropical forest species

Abstract Masting is a common reproductive strategy regulating seedling regeneration in many perennial plant species. The evolutionary origins and functional benefits of masting have been explained by well‐supported hypotheses relating to economies of scale of seed production. Nevertheless, our understanding of the potential costs of masting for the plant seed‐to‐seedling transitions remains limited. We tracked the seed fate and documented changes in the seed spatial distribution patterns during the seed‐to‐seedling transition process of Castanopsis fargesii, a dominant species of subtropical evergreen broad‐leaved forests in China under natural conditions for more than 6 years. Masting resulted in a high proportion of seeds escaping predation by vertebrates and rodents, supporting the predator satiation hypothesis. However, it increased the pre‐dispersal seed predation by insects, and decreased the seed germination rate due to a negative effect on seed mass. This resulted in seed‐to‐seedling transition rates during mast years to be roughly half as much as during non‐mast years. In addition, masting negatively affected the spatial rearrangement of seeds, resulting in a spatial aggregative distribution pattern of newly germinated seedlings. The combined negative effects of smaller seeds and spatially aggregated seedlings reduced the survival rate of newly germinated seedlings at seedling establishment stage. Synthesis. Considering the whole seed‐to‐established seedling transition process, the benefits of masting on seedling recruitment due to the effective seed predator situation by vertebrates and rodents were decreased by the additional costs on seed mass, seed germination, seed spatial arrangement and seedling establishment. Our results highlight the importance of considering both the positive and negative effects of masting at each stage of the seed‐to‐seedling transition. Inferences based on seed predation and recruitment of newly germinated seedlings alone would lead to an overly optimistic conclusion about the benefits of masting.

Early growth of Cotton is affected by increasing concentration of fresh leaves extract of Calotropis procera

An experiment was conducted to explore the effects of C. procera fresh leaves extract on cotton growth and vigor during seedling and early establishment stage. The trial was carried out in randomized complete block designed (RCBD) with 3 replications and 4 treatments viz., distilled water, 15%, 30% and 45% solution of Calotropis procera fresh leaves extracts. Data regarding the cotton seedling vigor and growth was collected and mean value of each trait were statistically compared through HSD Tukey’s test (P ≤ 0.05). The highest shoot length seedling-1 (252.25 mm), root length seedling-1 (98.33 mm), stem diameter seedling-1 (0.35 mm) and dry weight of the shoot seedling-1 (0.85 g) was noticed in distilled water treatment. Leaf extract treatments caused significant reduction in seedling vigor and growth. The highest reduction was noticed when treated with 45% aqueous extract of C. procera. The above-mentioned treatment caused significant reduction in various seedling traits, which may hinder early establishment of cotton crop. Therefore, the farmers should remove the dense population of C. procera around cotton fields to avoid allelopathic effects of weed and to reduce damaging effects on early growing cotton plants.

Transcriptome Analysis Reveals Genes of Flooding-Tolerant and Flooding-Sensitive Rapeseeds Differentially Respond to Flooding at the Germination Stage.

Flooding results in significant crop yield losses due to exposure of plants to hypoxic stress. Various studies have reported the effect of flooding stress at seedling establishment or later stages. However, the molecular mechanism prevailing at the germination stage under flooding stress remains enigmatic. The present study highlights the comparative transcriptome analysis in two rapeseed lines, i.e., flooding-tolerant (Santana) and -sensitive (23651) lines under control and 6-h flooding treatments at the germination stage. A total of 1840 up-regulated and 1301 down-regulated genes were shared by both lines in response to flooding. There were 4410 differentially expressed genes (DEGs) with increased expression and 4271 DEGs with reduced expression shared in both control and flooding conditions. Gene ontology (GO) enrichment analysis revealed that “transcription regulation”, “structural constituent of cell wall”, “reactive oxygen species metabolic”, “peroxidase”, oxidoreductase”, and “antioxidant activity” were the common processes in rapeseed flooding response. In addition, the processes such as “hormone-mediated signaling pathway”, “response to organic substance response”, “motor activity”, and “microtubule-based process” are likely to confer rapeseed flooding resistance. Mclust analysis clustered DEGs into nine modules; genes in each module shared similar expression patterns and many of these genes overlapped with the top 20 DEGs in some groups. This work provides a comprehensive insight into gene responses and the regulatory network in rapeseed flooding stress and provides guidelines for probing the underlying molecular mechanisms in flooding resistance.