In the present study, the membrane crystallizer was used to separate a saturated NaCl solution contaminated with an oil emulsion. The crystallizer was connected via a mesh separator with a feed tank in which capillary submerged modules were assembled. The effect of scaling and oil sorption on the wetting of polypropylene (PP) membranes has been investigated during the long-term studies. It has been found that cooling the solution in the crystallizer by 15 K below the feed temperature resulted in intensive NaCl crystallization in the zone below the mesh separator. A result, the salt crystallization on the membrane surface was eliminated. Contamination of saturated brines with oil in the concentration exceeding 100 mg/L caused the oil penetration into the membrane pores. The application of a PP net assembled on the capillary membranes surface reduced the intensity of wetting phenomenon caused by scaling and the oil sorption, which provides a stable membrane module performance during 1300 h test.