Flame stability during flame spray pyrolysis (FSP) remains an active topic of investigation due to its impact on synthesised particle attributes and purity. The unique feature of the burner investigated here is the ability to control flame stability over newly defined stability maps. The novelty of the current work lies in understanding the influence of these broad stability modes on nanoparticle growth during FSP and on the attributes of collected products. Several distinct flame configurations are selected for iron oxide nanoparticle synthesis, ranging from stable to highly unstable flames. The flame stability regimes are characterised by OH∗ chemiluminescence and broadband flame luminescence imaging. Stability is correlated with the coefficient of variation of flame luminescence (CV) and flame height with mean OH∗ chemiluminescence. Planar Mie scattering is then used to identify the effect of flame luminescence intermittency on spray atomisation and evaporation quality. For particle analysis, in-situ thermophoretic sampling is performed from 30 to 200 mm above the burner exit plane and analysed via transmission electron microscopy (TEM). Further ex-situ analysis is also performed on the bulk-collected product via high-resolution TEM, X-ray powder diffraction (XRD), and attenuated total reflectance Fourier transform infrared spectroscopy (ATR-FTIR). It is demonstrated that flames with higher instability (CVmin ≥ 0.35) maintain increased spray heights (>26 %) and reduced flame heights (>79 %) compared to stable flames with the same precursor volume flowrate. This reduces the high-temperature particle residence time for primary particle growth and impacts subsequent agglomeration. For example, the mean diameter of gyration and primary particle diameter are found to vary by 44 % and 29 % depending on the flame regime, respectively. Ex-situ analysis also demonstrates that the dominant iron oxide phase produced is maghemite regardless of the stability regime. However, higher concentrations of organic impurities including methyl, methylene and carboxylate functional groups are found via ATR-FTIR with increased flame instability (CV).