We consider transition amplitudes in the coloured simplicial Boulatov model for three-dimensional Riemannian quantum gravity. First, we discuss aspects of the topology of coloured graphs with non-empty boundaries. Using a modification of the standard rooting procedure of coloured tensor models, we then write transition amplitudes systematically as topological expansions. We analyse the transition amplitudes for the simplest boundary topology, the 2-sphere, and prove that they factorize into a sum entirely given by the combinatorics of the boundary spin network state and that the leading order is given by graphs representing the closed 3-ball in the large N limit. This is the first step towards a more detailed study of the holographic nature of coloured Boulatov-type GFT models for topological field theories and quantum gravity.