Manganese(iii) hexadentate Schiff base complexes ([Mn(sal-N-1,5,8,12)]Y·S, Y = AsF6 (1); Y = SbF6 (2); Y = NO3, S = C2H5OH (3) and Y = Cl (4)) have been investigated to determine the impact of anion effects, intramolecular ligand distortions, and intermolecular supramolecular structures on the spin crossover (SCO) behavior. The crystal structure of [Mn(sal-N-1,5,8,12)]PF6, a complex known to exhibit an abrupt SCO behavior with an 8 K hysteresis window, reveals that this complex has a temperature-dependent anion order-disorder transition that disrupts the hydrogen-bonding chain upon SCO, indicating that hydrogen bonds between cations and anions greatly influence the magnetic properties. The SCO in 1 is mediated by intermolecular hydrogen-bonding interactions. The subtle balance of these hydrogen bonds induces a cooperative SCO process with a hysteresis width of 18 K, which is the largest one reported in the d4 SCO chemistry. For 2, crystal structural analysis indicates that changing the anion from AsF6- to SbF6- led to close stackings between phenyl groups from ligands. These stackings preclude the spin transition of the [Mn(sal-N-1,5,8,12)]+ cations. With NO3- and Cl- as counterions, the [Mn(sal-N-1,5,8,12)]+ cations are arranged more loosely and exhibit gradual SCO in the temperature range of 300-100 K. Careful evaluation of the supramolecular structures of these complexes and similar complexes reported previously revealed strong correlation between the supramolecular packing forces and their magnetic properties.