A two-stage Pressurized Water Reactor (PWR)-Accelerator Driven System (ADS) fuel cycle is proposed as an option to transmute minor actinides (MAs) recovered from the spent PWR fuels in the ADS system. At the second stage, the spent fuels discharged from ADS are reprocessed by the pyro-chemical process and the recovered actinides are mixed with the top-up MAs recovered from the spent PWR fuels to fabricate the new fuels used in ADS. In order to lower the amount of nuclear wastes sent to the geological repository, an optimized scattered reloading scheme for ADS is proposed to maximize the discharge burnup and lower the burnup reactivity loss. Then the flexibility of ADS for MA transmutation is evaluated in this research. Three aspects are discussed, including: different cooling time of spent ADS fuels before reprocessing, different reprocessing loss of spent ADS fuels, and different top-up MAs recovered from different kinds of spent PWR fuels. The ADS system is flexible to be combined with various pyro-chemical reprocessing technologies with specific spent fuels cooling time and unique reprocessing loss. The reduction magnitudes of the long-term decay heat and radiotoxicity of MAs by transmutation depend on the reprocessing loss. The ADS system is flexible to transmute MAs recovered from different kinds of spent PWR fuels, regardless of UOX or MOX fuels. The reduction magnitudes of the long-term decay heat and radiotoxicity of different MAs by transmutation stay on the same order.