This paper presents a spectral element model for investigating the dynamic response characteristics of the arbitrary polygonal built-up reinforced plate system subjected to far-field blast load. In the researched system, the plate elements are made of sandwich materials with functionally graded carbon nanotube reinforced (FG-CNTRC) panels and three-dimensional graphene foam (3D-GrF) core. The stiffness matrix assembly method is incorporated into the spectral element method (SEM) for establishing the overall dynamic formulas of arbitrary assembled plates. Thereinto, the governing equations of motion of plate elements are derived by the Hamilton's principle based on the simple first-order shear deformation theory (S-FSDT) retaining only four displacement variables, which provides an advantage to maintain interelement continuity conditions completely. After that, the natural frequencies and transient responses of the systems with different built-up forms are solved by introducing a golden section search algorithm and Fourier series expansion of the blast load. The admirable predictive accuracy of the present model is verified by comparing the obtained results and the reference solution from finite element method (FEM). Moreover, the effects of the CNT distribution form, CNT volume fraction, 3D-GrF pore distribution form, 3D-GrF porosity, the thickness ratio of the sandwich panel, TNT mass and explosion radius on the transient vibration properties of the system are revealed through a detailed parametric study.