Specific Assemblages Research Articles

Temporal Plurality and Temporal Transgressions: Time and Things in an Early Colonial Period Mortuary Assemblage from Northern Highland Ecuador

The power of archaeology as an arm of postcolonial studies lies with its focus on the material dimensions of colonialism and its ability to interrogate the role of things in negotiating the terrain of cultural dissonance. This paper contributes to the postcolonial critique by taking up the matter of temporality and historicity from an indigeno-centric perspective, offering an analysis of the notion of temporal plurality via a focus on the “time of materials.” The context of the study is a specific mortuary assemblage from a shaft tomb in the northern Andean highlands of Ecuador dating to the early Colonial period. This example is used to illustrate the way objects, as elements of heterogeneous assemblages, can create distinct temporalities that work to contravene or resist assimilation to the regime of historicity. The assemblage analyzed here conveys an ontology of temporal plurality that encompassed both radical continuity and radical change. As one example among many, it serves to challenge taken-for-granted assumptions about the universality of historical time, the “natural” segregation of past, present, and future, and the significance of European artifacts in indigenous contexts.

From microbes to mammals: comprehensive analysis of biodiversity using DNA metabarcoding

Event Abstract Back to Event From microbes to mammals: comprehensive analysis of biodiversity using DNA metabarcoding Mehrdad Hajibabaei1* 1 University of Guelph, Canada Genomic technologies—especially high throughput sequencing (HTS) platforms—provide the capacity to generate vast amounts of genetic data from all types of specimens. DNA metabarcoding utilizes this capacity to derive biodiversity data from the marker genes (e.g. DNA barcodes) embedded in the organisms residing in a bulk environmental sample—from water to soil to sediments. The ability to identify all organisms, from microbes to mammals, from a simple water sample is transformative for scientific and socioeconomic applications. This is reflected in the rapid rise of publications using metabarcoding for biodiversity analysis. These investigations have mainly focused on: 1) a small subset of biodiversity (e.g. invasive species, endangered species); 2) specific assemblages (e.g. ecological bioindicator species); or 3) whole communities (e.g. habitat assessment, beta diversity analysis). These objectives are generally achievable by utilizing small/medium DNA sequencing platforms. However, recently introduced ultra-high-throughput sequencers are capable of further advancing this field by providing comprehensive coverage of all species present in a given sample from a single test. In the face of a global biodiversity crisis, the next phase of ecosystem investigations will need to involve the standardized large-scale application of DNA metabarcoding technologies to generate comprehensive, near real-time biodiversity information. Keywords: Genomics, Biodiversity, metabacroding, environmental DNA (eDNA), Biomonitoirng, Environmental assessement Conference: XX Iberian Symposium on Marine Biology Studies (SIEBM XX) , Braga, Portugal, 9 Sep - 12 Sep, 2019. Presentation Type: Keynote talk Topic: Keynote lecture Citation: Hajibabaei M (2019). From microbes to mammals: comprehensive analysis of biodiversity using DNA metabarcoding. Front. Mar. Sci. Conference Abstract: XX Iberian Symposium on Marine Biology Studies (SIEBM XX) . doi: 10.3389/conf.fmars.2019.08.00008 Copyright: The abstracts in this collection have not been subject to any Frontiers peer review or checks, and are not endorsed by Frontiers. They are made available through the Frontiers publishing platform as a service to conference organizers and presenters. The copyright in the individual abstracts is owned by the author of each abstract or his/her employer unless otherwise stated. Each abstract, as well as the collection of abstracts, are published under a Creative Commons CC-BY 4.0 (attribution) licence (https://creativecommons.org/licenses/by/4.0/) and may thus be reproduced, translated, adapted and be the subject of derivative works provided the authors and Frontiers are attributed. For Frontiers’ terms and conditions please see https://www.frontiersin.org/legal/terms-and-conditions. Received: 15 Sep 2019; Published Online: 27 Sep 2019. * Correspondence: Prof. Mehrdad Hajibabaei, University of Guelph, Guelph, Canada, hajibabaei@gmail.com Login Required This action requires you to be registered with Frontiers and logged in. To register or login click here. Abstract Info Abstract The Authors in Frontiers Mehrdad Hajibabaei Google Mehrdad Hajibabaei Google Scholar Mehrdad Hajibabaei PubMed Mehrdad Hajibabaei Related Article in Frontiers Google Scholar PubMed Abstract Close Back to top Javascript is disabled. Please enable Javascript in your browser settings in order to see all the content on this page.

Facies architecture of the Cambrian deposits of the Baltica shelf in the Lublin Basin, SE Poland

In the Cambrian, the Lublin Basin was a shallow-water area, located on the western edge of the Baltica palaeocontinent. The Cambrian sedimentary sequence, forming the lower part of the sedimentary cover of the North European Platform, is lithologically diversified and reflects dynamic variation in depositional environment. This paper presents the distribution of palaeofacies and sedimentary environments in the early Lublin Basin, including changes in their lateral extent during its evolution in the Cambrian. In order to evaluate the facies architecture of the Lublin Basin, a sedimentological analysis was carried out. On the basis of the detailed logging of drill cores, lithofacies made up of conglomerates, sandstones, mudstones and heterolithic deposits were distinguished; 16 lower-rank sublithofacies were identified. Their specific assemblages are indicative of shelf-type lithofacies associations, i.e. (1) tidal flat with muddy, mixed and sandy tidal plain sublithofacies including subtidal channels; (2) barrier – lagoon; (3) shoreface with lower, middle and upper shoreface subassociations; and (4) offshore with upper and lower offshore subassociations, including sandy tidal ridges. During the early Cambrian, the lateral variability and environmental succession indicate a transgressive, long-term trend and the migration of a lagoonal environment across wide tidal plains and the shoreface up to an offshore environment. The Lublin Basin reached its greatest lateral extent and maximum depth in the upper lower Cambrian. Next, an opposite trend began and during the middle Cambrian a regression cycle is recorded in successive changes in sedimentary environments that reflect a progressive shallowing. Multiple changes in adjacent environments indicate repeated and cyclical, lower-rank ingressions.

Embracing the "Atomic Future" in Post-World War II Austria.

Mentioning nuclear energy and Austria simultaneously usually alludes to the rejection of nuclear power as a hallmark of Austria's technopolitical identity. This quasi-mythical anti-nuclear positioning came at the price of wiping out the memory of nuclear optimism following WWII until the 1970s. Reconstructing Austria's pro-nuclear phase, we investigate the construction of the institutional infrastructure of pro-nuclearity and the embrace of the "atomic age" as part of a progress-oriented reimagining of the Austrian nation; we show how the nuclear was appropriated; and we elaborate on the creation of a robust sociotechnical imaginary of a trajectory linking Austria's technoscientific past to a bright nuclear future. This allows us to understand how the political and the nuclear were entangled, to grasp the difference in what it takes to create a pro- or anti-nuclear position, and to see how building this sociotechnical imaginary needed specific assemblages of institutional actors, technical elements, values, and futures.

Multiple indicators of rice remains and the process of rice domestication: A case study in the lower Yangtze River region, China

The process of rice domestication has been studied for decades based on changing morphological characteristics in assemblages of both macroremains, such as charred seeds and spikelet bases, and microremains, such as phytoliths, esp. bulliform and double-peaked phytoliths. The applicability of these indicators in determining if a specific assemblage is wild or domesticated, however, is rarely discussed. To understand the significance of these indicators in the determination of domestication, we collected 38 archaeological samples from eight Neolithic sites, dating from 10-2ka BP, in the lower Yangtze River region to analyze and compare the changes of these different indicators over eight thousand years. The data demonstrate that the comprehensive analysis of multiple indicators may be the best method to study the process of rice domestication developed thus far. An assemblage of rice remains can be identified as domesticated forms if they meet the following criteria simultaneously: 1) the proportion of domesticated-type bulliform phytoliths is more than 73%; and 2) the proportion of domesticated-type rice spikelet bases is higher than 75%. Furthermore, we found that each indicator tends to change steadily and gradually over time, and each stabilized at a different time, suggesting that the characteristics of domesticated rice developed slowly and successively. Changes of multiple indicators during the period between 10,000–2,000 yr BP indicate that the process of rice domestication in the lower Yangtze River region lasted as long as ca. 6,000 years during the Neolithic, and can be divided into three stages with the turning points in the middle Hemudu-late Majiabang culture (6,500–5,800yr BP) and the late Liangzhu culture (4,600–4,300yr BP).

Bryophyte flora and vegetation of serpentine sites in the French Massif Central

Eight major serpentine sites in the French Massif Central have been bryofloristically surveyed and their specific assemblages studied by performing systematic relevés. Seventy bryophyte taxa are reported from these serpentine areas. Archidium alternifolium, Bryum gemmilucens, Cephaloziella stellulifera, Grimmia dissimulata, Racomitrium fasciculare, R. lanuginosum and Riccia subbifurca are dominant and characteristic species. Soil and rock communities harbour typical combinations of specialized and ubiquitous taxa. The occurrence of saxicolous species (Grimmia) on the ground may be a typical feature of serpentine communities. The scarcity of liverworts is underlined, as is the complexity of the controlling factors. Lack of competition and periodic submergence are probably ecological factors of prime importance. Successional pathways are certainly insufficiently known, especially as far as bryophytes are concerned. The causes of negligible succession on skeletal soils would benefit from renewed studies. Grazing of serpentine grasslands, generally considered the most relevant management tool, should be evaluated further.

Turbidity, Waterfowl Herbivory, and Propagule Banks Shape Submerged Aquatic Vegetation in Ponds.

The aquatic vegetation in nutrient-rich shallow lakes and ponds is structured by the interplay of multiple biotic and abiotic drivers. We tested the contribution of the macrophyte propagule bank and the delayed as well as direct impact of waterbirds on submerged aquatic vegetation in a peri-urban pond system. To clarify the functional hierarchy of predictor variables, effects of herbivorous waterfowl and propagule bank potential were ranked relative to environmental, phytoplankton, and zooplankton indicators. Two aspects of the aquatic vegetation – community composition and total pond-scale cover – were discriminated. Within vegetation communities, phytoplankton biovolume and waterfowl herbivory during summer were linked to low macrophyte abundance, whereas propagule density of angiosperms was positively associated with specific assemblages of submerged macrophytes. High algal biovolume and summer waterfowl grazing seemed to affect maximal pond-scale cover of submerged aquatic vegetation. The presence of waterfowl in cold and spring periods was unrelated to vegetation structure in the consecutive main growth season. In addition, availability of propagules in the sediment did not automatically prompt pond-wide vegetation cover (especially when overruled by high waterfowl densities), nor did it guarantee a position in the submerged macrophyte community. Nonetheless, propagule bank potential was related to the waterbody’s general ecological status, since turbid ponds exhibited impoverished propagule reserves compared to ponds residing in a clear, macrophyte-dominated state. Inadequate recruitment therefore represents a plausible bottleneck for macrophyte establishment. We conclude that phytoplankton-caused turbidity and high waterfowl biomass densities greatly restrict submerged macrophyte abundance. Propagule banks also participate in structuring submerged aquatic vegetation, though a stronger role is reserved for herbivorous waterfowl.

Late Hellenistic and early Roman slumped and cast glass vessels from the House of Orpheus at Paphos, Cyprus. An interim report

This paper provides the preliminary results from an integrated study of the Hellenistic and early Roman glass vessel assemblage from the large domestic context at Paphos named the House of Orpheus. The homogeneous appearance of the omnipresent slumped and cast vessels in late Hellenistic and early Roman contexts within the entire Mediterranean makes it fairly complex to define the origin of specific assemblages when only studying the external features.We present here the results of a combined study of in-situ optical analysis by means of absorption spectroscopy and chemical analyses with SEM-EDS and LA-ICP-MS. In a first step 107 fragments were optically analysed to categorize possible glass groups and 54 selected pieces were sampled to characterize their chemical composition. Four optically defined glass types can be distinguished with respect to the use of a decolouring or colouring agent and the impact of the furnace condition. The chemical analysis techniques define four distinct subgroups within the homogeneous cluster of Levantine glass.

Microbiome and Blood Analyte Differences Point to Community and Metabolic Signatures in Lean and Obese Horses.

Due to modern management practices and the availability of energy dense feeds, obesity is a serious and increasingly common health problem for horses. Equine obesity is linked to insulin resistance and exacerbation of inflammatory issues such as osteoarthritis and laminitis. While the gut microbiome is thought to play a part in metabolic status in horses, bacterial communities associated with obesity have yet to be described. Here we report differences in metabolic factors in the blood of obese, normal and lean horses correlated with differences in gut microbiome composition. We report that obese horses had higher levels of leptin, triglycerides, glucose, and cortisol in their blood, and more diverse gut microbiome communities with higher relative abundance of Firmicutes, and lower numbers of Bacteroidetes and Actinobacteria. Network analyses of correlations between body condition, blood analytes, and microbial composition at the genus level revealed a more nuanced picture of microbe-host interactions, pointing to specific bacterial species and assemblages that may be signatures of obesity and leanness in the horse gut. In particular, bacteria groups positively associated with two blood analytes and obesity included Butyrivibrio spp., Prevotellaceae, Blautia spp., two members of Erysipelotrichaceae, and a Lachnospiraceae taxa. These results are an important first step in unraveling the metabolic differences between obese and lean horse gut communities, and designing targeted strategies for microbial intervention.

Response of plant diversity to moss, Carex or Scirpus revegetation strategies of wet depressions in restored fens

Pool margins and wet depressions (hollows) contribute considerably to peatland biodiversity by sheltering specific plant assemblages. In peatlands restored after peat extraction, the typical communities associated with pools generally fail to re-establish if only the moss layer transfer technique is applied, a common approach on flat bare peatlands. To adapt peatland ecological restoration methods for recolonizing shallow wet fen habitats, this study investigates the response of plant communities re-establishing in wet depressions subjected to four revegetation strategies. In a restored fen (southeastern Quebec, Canada), 48 depressions were dug out and revegetated with 1) mosses, 2) Carex species, 3) Scirpus validus, or 4) through spontaneous colonization (control treatment without implanted species). After four growing seasons, plant community structure and composition were surveyed in and outside the revegetated area respectively to test whether reintroduced communities had a propensity to extend beyond the central wet depression. Restoration strategies strongly impacted plant communities. Moss-revegetated wet depressions had higher moss and vascular fen-specialist species richness and distinct species assemblages relative to other treatments. Carex treatment increased only vascular cover compared to control, while Scirpus validus treatment did not differ from control. The positive impact of moss transfer was local and limited to core revegetated areas, as transferred plant material did not colonize any further. Our results suggest that transferring moss in created wet depressions is an effective strategy to foster the recolonization of diverse and distinct plant assemblages, and thereby restore local fen biodiversity hotspots.

A hibonite-spinel-corundum-hematite assemblage in plagioclase-clinopyroxene pyrometamorphic rocks, Hatrurim Basin, Israel: mineral chemistry, genesis and formation temperatures

AbstractThe intergrowths of Fe-rich corundum + Al-rich hematite + spinel + hibonite have been found as an assemblage in a plagioclase-clinopyroxene rock (paralava, former hornfels) at the Hatrurim Basin, Hatrurim combustion metamorphic Formation. Most spinels show oriented exsolution structures and vary from (Mg0.75${\rm Fe}_{{\rm 0}{\rm. 25}}^{2 +} $)(Al1.80${\rm Fe}_{{\rm 0}{\rm. 20}}^{3 +} $)O4(with exsolutions) to (Mg0.77${\rm Fe}_{{\rm 0}{\rm. 23}}^{2 +} $)(Al1.95${\rm Fe}_{{\rm 0}{\rm. 05}}^{3 +} $)O4(homogeneous) indicating a tendency towards magnesioferrite and magnetite, and enrichment in NiO (up to 1.9 wt.%) and ZnO (up to 1.4 wt.%). Hibonite is Ti rich (TiO2> 8 wt.%) and close to CaAl9Fe3+(Mg,Fe2+)TiO19. Corundum varies in Fe2O3(4.2–11.8 wt.%). Hematite is also inhomogeneous and contains oriented exsolution structures of corundum. It shows variable concentrations of TiO2(0.7–5.6 wt.%), Al2O3(0.7–8.6 wt.%), Cr2O3(0.2–1.5 wt.%), V2O3(0.1–1.0 wt.%) and MgO (0.3–2.0 wt.%). Crystallization of this specific assemblage is assumed to be at 1000–1200°C using evaluations for the corundum hematite pair with reference to published experimental data. The active role of superheated oxidised volatiles is suggested during both crystallisation of this corundum-bearing association and host-rock transformation (melting event for hornfels → paralava).

Variation in the Molecular Structure and Radiocarbon Abundance of Mineral-Associated Organic Matter across a Lithosequence of Forest Soils

Soil mineral assemblage influences the abundance and mean residence time of soil organic matter both directly, through sorption reactions, and indirectly, through influences on microbial communities. Though organo-mineral interactions are at the heart of soil organic matter cycling, current models mostly lack parameters describing specific mineral assemblages or phases, and treat the mineral-bound pool as a single homogenous entity with a uniform response to changes in climatic conditions. We used pyrolysis GC/MS in combination with stable isotopes and radiocarbon abundance to examine mineral-bound soil organic matter fractions from a lithosequence of forest soils. Results suggest that different mineral assemblages tend to be associated with soil organics of specific molecular composition, and that these unique suites of organo-mineral complexes differ in mean residence time. We propose that mineralogy influences the composition of the mineral-bound soil organic matter pool through the direct influence of mineral surface chemistry on organo-mineral bond type and strength in combination with the indirect influence of soil acidity on microbial community composition. The composition of the mineral-bound pool of soil organic matter is therefore partially dictated by a combination of compound availability and sorption affinity, with compound availability controlled in part by microbial community composition. Furthermore, results are suggestive of a preferential sorption of N-containing moieties in Fe-rich soils. These bonds appear to be highly stable and confer extended mean residence times.

Carriage of critically important antimicrobial resistant bacteria and zoonotic parasites amongst camp dogs in remote Western Australian indigenous communities

Camp dogs in indigenous communities in the Western Australian Kimberley Region, share the domestic environment with humans and have the potential to act as carriers of, and sentinels for, a wide range of zoonotic agents, including intestinal parasites and antimicrobial resistant bacteria. In this study, we investigated the carriage of extended-spectrum-cephalosporin-resistant (ESC-resistant) Escherichia coli, methicillin-resistant Staphylococcus aureus (MRSA) and species of hookworm and Giardia among camp dogs in remote Western Australian Aboriginal communities. A total of 141 canine faecal samples and 156 nasal swabs were collected from dogs in four communities of the Western Australian Kimberley region. Overall, ESC-resistant E. coli was detected in 16.7% of faecal samples and MRSA was isolated from 2.6% of nasal swabs. Of most significance was the presence of the community-associated Panton-Valentine leucocidin (PVL)-positive MRSA ST93 and ST5 clones and ESC-resistant E. coli ST38 and ST131. The most prevalent zoonotic intestinal parasite infection was Ancylostoma caninum (66%). The prevalence of Giardia was 12.1%, with the main genotypes of Giardia detected being dog specific assemblages C and D, which are unlikely to cause disease in humans.

First report on Giardia duodenalis assemblage F in Slovakian children living in poor environmental conditions.

Giardiasis is one of the most common gastrointestinal infections of humans and animals attributable to complex of eight morphologically identical genetic assemblages, further divided into sub-assemblages. Disease is common for a wide range of hosts and genetic characterization is needed for better understanding of multifaceted epidemiology for this protozoan parasite. The aim of this study was to identify genetic heterogeneity in assemblages and sub-assemblages of Giardiaduodenalis circulating among the children population living in deprived socioeconomic conditions. A total of 333 stool samples from children in eastern Slovakia were collected during the period of 2015-2016 and analysed by molecular methods. Molecular characterization of G. duodenalis was performed by sequence analysis of triose phosphate isomerase gene (tpi) and glutamate dehydrogenase gene (gdh). G. duodenalis DNA was detected in 21 samples (6.3%), out of which 14 isolates (66.7%) belonged to assemblage B, 4 isolates (19.0%) to sub-assemblage AII and 3 isolates (14.3%) corresponded to assemblage F. As regards the determination of sub-assemblages of assemblage B, 4 isolates were characterized as sub-assemblage BIII and 6 isolates as sub-assemblage BIV. This study is the first finding of cat specific assemblage F in man not only in Slovakia, but also in Europe. The absence of molecular data about G. duodenalis in companion animals in Slovakia establishes a strong need for further investigation for potential sources of giardiasis and understanding the epidemiology will help to improve the preventive strategies in eradication of infection in this population.

Stable and Enriched Cenarchaeum symbiosum and Uncultured Betaproteobacteria HF1 in the Microbiome of the Mediterranean Sponge Haliclona fulva (Demospongiae: Haplosclerida).

Sponges harbor characteristic microbiomes derived from symbiotic relationships shaping their lifestyle and survival. Haliclona fulva is encrusting marine sponge species dwelling in coralligenous accretions or semidark caves of the Mediterranean Sea and the near Atlantic Ocean. In this work, we characterized the abundance and core microbial community composition found in specimens of H. fulva by means of electron microscopy and 16S amplicon Illumina sequencing. We provide evidence of its low microbial abundance (LMA) nature. We found that the H. fulva core microbiome is dominated by sequences belonging to the orders Nitrosomonadales and Cenarchaeales. Seventy percent of the reads assigned to these phylotypes grouped in a very small number of high-frequency operational taxonomic units, representing niche-specific species Cenarchaeum symbiosum and uncultured Betaproteobacteria HF1, a new eubacterial ribotype variant found in H. fulva. The microbial composition of H. fulva is quite distinct from those reported in sponge species of the same Haliclona genus. We also detected evidence of an excretion/capturing loop between these abundant microorganisms and planktonic microbes by analyzing shifts in seawater planktonic microbial content exposed to healthy sponge specimens maintained in aquaria. Our results suggest that horizontal transmission is very likely the main mechanism for symbionts' acquisition by H. fulva. So far, this is the first shallow water sponge species harboring such a specific and predominant assemblage composed of these eubacterial and archaeal ribotypes. Our data suggests that this symbiotic relationship is very stable over time, indicating that the identified core microbial symbionts may play key roles in the holobiont functioning.

Source component mixing controls the variability in Cu and Au endowment along the strike of the Eastern Andean Cordillera in Peru

Mississippian arc magmatic suites of the Au-rich Pataz and Cu-dominated Montañitas regions in Peru reveal distinct modes of magmatic-hydrothermal petro- and metallogenesis. The distinction is remarkable due to their broad contemporaneity (336–322 Ma), arc-parallel position, and close distance (< 50 km) to each other. In both arc regions, petrography, geochemistry, and the tectonic setting of magmatic suites suggest a rapid switch from syn-collisional/compressional to post-collisional/extensional (with ‘A2-type’ signature) emplacement regime. Rocks of the Au-rich Pataz region originate from mixed sources with a contribution from the mantle (εHf > 0 and δ18O of ~ 5.3‰) and assimilated old crust (variously low εHf and δ18O > 5.3‰). The ultimate source of Au in the mineralised Pataz batholith was oxidised (fO2 at FMQ buffer; based on zircon trace chemistry) and alkali-, LILE- and HFSE-enriched, most likely represented by the metasomatised mantle. The syn-extensional emplacement of the relatively reduced (ΔFMQ < 0), but unmineralised, A2-type suite involved assimilation of reduced crust. Associated, reduced, magmatic-hydrothermal fluids infiltrated the Au-bearing batholith suite and effectively mobilised and transported and concentrated Au. In the Montañitas region, rocks are oxidised (ΔFMQ > 0) and dominantly mantle derived without significant incorporation of crustal material. Samples from the Cu-mineralised suites indicate the additional contribution of a δ18O < 5.3‰ source, potentially melted layer-2 gabbro. In addition, the elevated whole-rock La/Yb and Sr/Y ratios are compatible with minor addition of slab-derived material, which may have enhanced Cu endowment in this region. Late-magmatic, oxidised fluids derived from the younger A2-type suite controlled Cu mobilisation and concentration, while Au behaved largely refractory. In general terms, it is postulated that source mixing in continental arcs is a first-order control of contrasting Cu and Au endowment and that sequential intrusion processes facilitate late-magmatic-hydrothermal mobilisation and concentration of specific metal assemblages.

Comparative study of effects of assemblages AII and BIV of Giardia duodenalis on mucosa and microbiota of the small intestine in mice

AimsGiardiasis is one of the major causes of diarrhea worldwide and its symptoms vary in intensity, which can be attributed to different parasite assemblages. The goal of the present study was to compare the effects of infection caused by assemblages AII and BIV ofGiardia duodenalis on the response of the small intestine, microbiota, and behavioral parameters in mice. Main methodsSwiss mice were infected with assemblages AII and BIV of G. duodenalis for 15 days. Leucometry, pain, intestinal microbiota and histological parameters of the duodenum and jejunum were evaluated in the experimental groups. Key findingsBoth assemblages modified the composition of the intestinal microbiota. Infection with assemblage AII promoted leukocytosis, reflected by increasing number of polymorphonuclear cells, intraepithelial lymphocytes and pain-related behavior, indicating that this was the more aggressive assemblage with regard to its effects on the intestinal mucosa and duodenum. SignificanceThe specific assemblage of the parasite is an important parameter that affects symptomatology in the host.

Distribution and abundance of the ichthyoplankton assemblages and its relationships with the geostrophic flow along the southern region of the California Current

The distribution of ichthyoplankton assemblages (summer 1999 and winter 2000) from the southern region of the California Current (CC) off the Baja California Peninsula were analyzed. Latitudinal and ocean-coast distribution limits of the assemblages were associated with the geostrophic flow, which showed the presence of cyclonic and anticyclonic eddies in the northern and central region of the Baja California Peninsula. The comparative analysis of distribution and abundance of the developmental stages (egg to preflexion, flexion, and postflexion larval stages), showed that each mesoscale eddy had a specific ichthyoplankton assemblage, and the ichthyogeographic regionalization of the study area was determined by the presence of eddies and fronts. Retention processes were observed on epipelagic and demersal species where the fish larvae were maintained near the coastal region. Normal 0 21 false false false ES X-NONE X-NONE /* Style Definitions */ table.MsoNormalTable {mso-style-name:Tabla normal; mso-tstyle-rowband-size:0; mso-tstyle-colband-size:0; mso-style-noshow:yes; mso-style-priority:99; mso-style-parent:; mso-padding-alt:0cm 5.4pt 0cm 5.4pt; mso-para-margin:0cm; mso-para-margin-bottom:.0001pt; mso-pagination:widow-orphan; font-size:10.0pt; font-family:Calibri,sans-serif;}

Comparison of hydrothermal alteration patterns associated with porphyry Cu deposits hosted by granitoids and intermediate-mafic volcanic rocks, Kerman Magmatic Arc, Iran: Application of geological, mineralogical and remote sensing data

The southern section of the Cenozoic Urumieh-Dokhtar Magmatic Arc (UDMA) of Iran, known as Kerman Magmatic Arc (KMA) or Kerman copper belt, is a major host to porphyry Cu ± Mo ± Au deposits, collectively known as PCDs. In this study, the Advanced Spaceborne Thermal Emission and Reflection Radiometer (ASTER) data and spectral angle mapper (SAM) method, combined with field data, mineralogical studies, and spectral analysis are used to determine hydrothermal alteration patterns related to PCDs in the KMA. Gossans developed over some of these porphyry type deposits were mapped using Landsat 8 data. In the NKMA gossans are more developed than in the SKMA due to comparatively lower rate of erosion. The hydrothermal alteration pattern mapped by ASTER data were evaluated using mineralogical and spectral data. ASTER data proved to be useful for mapping the hydrothermal alteration in this semi-arid type of climate. Also Landsat 8 was useful for mapping the iron oxide minerals in the gossans that are associated with the porphyry copper deposits. Our multidisciplinary approach indicates that unlike the PCDs in the northern KMA that are associated with distinct and widespread propylitic alteration, those in the granitoid country rocks lack propylitic alteration or the alteration is only weakly and irregularly developed. The porphyry systems in southern KMA are further distinguished by development of quartz-rich phyllic alteration zones in the outer parts of the PCDs that could be mapped using remote sensing data. Consideration of variations in alteration patterns and specific alteration assemblages are critical in regional exploration for PCDs.

Eukaryotic Plankton Species Diversity in the Western Channel of the Korea Strait using 18S rDNA Sequences and its Implications for Water Masses

Organisms entering the East Sea (Sea of Japan) through the Korea Strait, together with water, salt, and energy, affect the East Sea ecosystem. In this study, we report on the biodiversity of eukaryotic plankton found in the Western Channel of the Korea Strait for the first time using small subunit ribosomal RNA gene (18S rDNA) sequences. We also discuss the characteristics of water masses and their physicochemical factors. Diverse taxonomic groups were recovered from 18S rDNA clone libraries, including putative novel, higher taxonomic entities affiliated with Cercozoa, Raphidophyceae, Picozoa, and novel marine Stramenopiles. We also found that there was cryptic genetic variation at both the intraspecific and interspecific levels among arthropods, diatoms, and green algae. Specific plankton assemblages were identified at different sampling depths and they may provide useful information that could be used to interpret the origin and the subsequent mixing history of the water masses that contribute to the Tsushima Warm Current waters. Furthermore, the biological information highlighted in this study may help improve our understanding about the complex water mass interactions that were highlighted in the Korea Strait.