Species-specific Life History Research Articles

Migratory birds modulate niche tradeoffs in rhythm with seasons and life history

Movement is a key means by which animals cope with variable environments. As they move, animals construct individual niches composed of the environmental conditions they experience. Niche axes may vary over time and covary with one another as animals make tradeoffs between competing needs. Seasonal migration is expected to produce substantial niche variation as animals move to keep pace with major life history phases and fluctuations in environmental conditions. Here, we apply a time-ordered principal component analysis to examine dynamic niche variance and covariance across the annual cycle for four species of migratory crane: common crane (Grus grus, n = 20), demoiselle crane (Anthropoides virgo, n = 66), black-necked crane (Grus nigricollis, n = 9), and white-naped crane (Grus vipio, n = 9). We consider four key niche components known to be important to aspects of crane natural history: enhanced vegetation index (resources availability), temperature (thermoregulation), crop proportion (preferred foraging habitat), and proximity to water (predator avoidance). All species showed a primary seasonal niche "rhythm" that dominated variance in niche components across the annual cycle. Secondary rhythms were linked to major species-specific life history phases (migration, breeding, and nonbreeding) as well as seasonal environmental patterns. Furthermore, we found that cranes' experiences of the environment emerge from time-dynamic tradeoffs among niche components. We suggest that our approach to estimating the environmental niche as a multidimensional and time-dynamical system of tradeoffs improves mechanistic understanding of organism-environment interactions.

Preliminary life history of the Critically Endangered bottlenose wedgefish Rhynchobatus australiae from Southeast Asia

The bottlenose wedgefish Rhynchobatus australiae has experienced substantial population declines throughout its range. However, there is a lack of life history information (age, growth, and maturity) available for this species to inform conservation and management efforts. A total of 48 R. australiae samples were purchased from 2 fishing ports in Singapore between July 2018-July 2019. Species identification was confirmed by mtDNA barcoding using the NADH2 region. Length of specimens ranged from 506-1645 mm total length (TL), and ages ranged from 0-11 yr. Multi-model analysis was used to estimate growth parameters using a Bayesian approach with informative priors. The von Bertalanffy model was the best fitting growth model for the combined sexes (L∞ = 2814 mm TL; L0 = 517 mm TL; k = 0.07 yr-1), for females only (L∞ = 3053 mm TL; L0 = 504 mm TL; k = 0.06 yr-1), and for males only (L∞ = 2741 mm TL; L0 = 497 mm TL; k = 0.07 yr-1). Preliminary results indicate that females and males may mature at different ages and lengths, with females (A50 = 3.25 yr; L50 = 1014 mm TL) matured younger and at smaller sizes, than males (A50 = 5.03 yr; L50 = 1197 mm TL). R. australiae has an estimated theoretical longevity of 40 and 47 yr for males and females, respectively. This study provides the first preliminary species-specific life history information for R. australiae, suggesting that this species in Southeast Asian waters is slow-growing. This information will further the biological knowledge available for this species and can be used to help design effective management and conservation measures.

Marine debris ingestion by adults and fledglings of Swinhoe's storm petrels in the Republic of Korea

Procellariiformes are highly vulnerable to marine plastic pollution due to their species-specific life histories. In particular, storm petrels are known to be one of the most vulnerable species with respect to plastic ingestion. In this study, we examined the plastic ingestion by adults and fledglings of Swinhoe's storm petrels on Chilbal Island, one of the largest breeding colonies for this species. During 2013 and 2014, we collected adult and fledgling carcasses and analyzed their stomach contents. The results showed that both adults and juveniles were consuming mostly plastics. Most of the collected Swhinhoe's storm petrels were consuming microplastic, with juveniles consuming a higher average amount of plastic than adults. The type of plastic ingested was more threadlike in adults and fragments in juveniles. In conclusion, the characteristics of ingested plastics differed between adults and juveniles, suggesting that analyzing individual age may be important for monitoring plastic ingestion in the future.

Jaws from the deep: biological and ecological insights on the kitefin shark Dalatias licha from the Mediterranean Sea

Due to their late maturation, extreme longevity, low fecundity and slow growth rates, deep-sea Chondrichthyes are extremely vulnerable to human impacts. Moreover, assessing the impact of deep-sea fisheries is difficult, as many species (including sharks) are part of the bycatch and are often discarded at sea, and/or landed under generic commercial-species codes. The lack of this information on fishery data sets and the limited availability of species-specific life history data make challenging the management of deep-sea Chondrichthyes. The kitefin shark Dalatias licha is a cosmopolitan elasmobranch, mainly found on continental and insular shelf-breaks and slopes in warm-temperate and tropical waters. This species is a common by-catch of the deep-sea trawling, considered as “Endangered” by the IUCN Red List for all European waters, Mediterranean Sea included. Here we present the results of a study based on a total of 78 specimens of kitefin shark collected over 3 years in the Ligurian Sea (NW Mediterranean) as by-catch from deep-water fisheries. Total length ranged from 380 to 1164 mm, and individual weight ranged from 198 to 8000 g. Immature and mature individuals showed a sex ratio dominated by males. Adult males were observed throughout the year, while mature females were observed only in spring-summer. These data lead to hypothesise a spatial segregation between genders. The kitefin shark diet was dominated by bony fish (mainly Macrouridae) and other small sharks (e.g., Galeus melastomus and Etmopterus spinax), but their gut included plastic items and parasites. Data reported here underline the rarity, complex ecology and the threat for this shark species and support the urgency of promoting initiatives for their monitoring and conservation.

Life-history characteristics and historical factors are important to explain regional variation in reproductive traits and genetic diversity in perennial mosses.

Plants have evolved an unrivalled diversity of reproductive strategies, including variation in the degree of sexual vs. clonal reproduction. This variation has important effects on the dynamics and genetic structure of populations. We examined the association between large-scale variation in reproductive patterns and intraspecific genetic diversity in two moss species where sex is manifested in the dominant haploid generation and sex expression is irregular. We predicted that in regions with more frequent realized sexual reproduction, populations should display less skewed sex ratios, should more often express sex and should have higher genetic diversity than in regions with largely clonal reproduction. We assessed reproductive status and phenotypic sex in the dioicous long-lived Drepanocladus trifarius and D. turgescens, in 248 and 438 samples across two regions in Scandinavia with frequent or rare realized sexual reproduction, respectively. In subsets of the samples, we analysed genetic diversity using nuclear and plastid sequence information and identified sex with a sex-specific molecular marker in non-reproductive samples. Contrary to our predictions, sex ratios did not differ between regions; genetic diversity did not differ in D. trifarius and it was higher in the region with rare sexual reproduction in D. turgescens. Supporting our predictions, relatively more samples expressed sex in D. trifarius in the region with frequent sexual reproduction. Overall, samples were mostly female. The degree of sex expression and genetic diversity differed between sexes. Sex expression levels, regional sex ratios and genetic diversity were not directly associated with the regional frequency of realized sexual reproduction, and relationships and variation patterns differed between species. We conclude that a combination of species-specific life histories, such as longevity, overall degree of successful sexual reproduction and recruitment, and historical factors are important to explain this variation. Our data on haploid-dominated plants significantly complement plant reproductive biology.

Multi-taxa marine isoscapes provide insight into large-scale trophic dynamics in the North Pacific

Quantifying large scale trophic dynamics and interactions in marine systems remains a key challenge in ecological research and conservation, particularly in remote habitats which are difficult and costly to access. Stable isotope (SI) analysis has emerged as an effective tool for studying ecosystem interactions, especially when used to construct isotopic landscapes, or “isoscapes”. We used a combination of empirical SI data, global modeled phytoplankton isoscapes, and oceanographic data to investigate how large SI datasets might be harnessed to describe and predict patterns of regional food web dynamics and trophic structuring. We collated data from 99 published and author-contributed datasets of carbon and nitrogen SI data for open-ocean and neritic nektonic fish and invertebrates in the North Pacific Ocean to estimate mean SI values for successive trophic level groups within Longhurst biogeographic provinces. We found that these estimates reflected geographic patterns predicted by modeled phytoplankton isoscapes, suggesting that baseline SI ratios are consistently propagated up through regional food webs. This was further corroborated by significant correlations between our estimated SI values with the same oceanographic and geographic variables known to influence phytoplankton SI ratios. However, we observed variable amounts of isotopic offset between successive trophic level groups within and across provinces, indicating that the underlying drivers of trophic dynamics differ across regions. We found evidence of decreased isotopic differences between higher level trophic groups, suggesting the possibility of trophic compression and highlighting the importance of using taxa- and tissue-specific trophic discrimination factors (TDFs) when comparing or predicting consumer SI ratios. We used stable isotopic niche analyses to demonstrate that coupled use of δ13C and δ15N data increased capacity to differentiate province-specific consumer groups, particularly where adjacent provinces had similar ranges of values for a single SI. We also found that baseline isoscapes may be a viable tool for predicting broad trends of consumer SI ratios by calculating ‘predicted’ δ13C and δ15N values for successive trophic groups across provinces using modeled phytoplankton data and diet-dependent discrimination factors. These predicted values were significantly correlated with our estimates based on empirical data, with similarity of predicted δ13C values increasing for higher trophic level groups. We conclude that regional SI patterns remain consistent across diverse ecosystems. With increased spatiotemporal resolution of SI data across ocean basins and increased availability of species-specific life history traits and physiologies, multi-taxa isoscapes hold great potential for studying large scale marine trophodynamics and movement patterns of highly mobile marine species.

Comparative biology of the grenadiers Macrourus caml and M. whitsoni in the Ross Sea region, Antarctica

The grenadiersMacrourus camlandM. whitsoniform a significant bycatch component of longline fisheries for Antarctic toothfish (Dissostichus mawsoni) in the Southern Ocean. A lack of species-level biological and catch data has to date hindered the development of quantitative assessments for these deepwater species. This paper examines species- and sex-specific life histories ofM.camlandM.whitsoniin the Ross Sea region, Antarctica, from samples collected from the commercial fishery and research collections.Macrourus camlwas found to live longer, grow slower, and attain a larger maximum length thanM.whitsoni, reaching at least 65 years of age and 97 cm total length (TL) vs. 43 years and 78 cm TL forM.whitsoni. In addition,M.camlattains a larger length for a given age and a greater weight for a given length. For each species, females of a given age were larger and reached a greater maximum age than males. Assuming that selectivity of the fishing gear is related to fish size, greater fishing pressure on females than males is likely, and was evidenced by female-biased sex ratios of both species. Estimates of natural and fishing mortality rates were low for both species. Despite having a shorter lifespan and attaining a smaller maximum length,M.whitsonimatured later in life and at larger lengths thanM.caml. Although sampling opportunities are constrained seasonally due to sea ice cover, gonad staging and interannual patterns in gonadosomatic indices suggest prolonged spawning for both species, with available data indicating peak spawning during austral summer. The differences in life history observed between these two closely related and morphologically similar species illustrates the importance of understanding species-specific life histories to infer responses to exploitation, provide key biological inputs to inform parameters for future risk assessments and ecosystem models as well as baseline information for comparative work over both time and space, contribute to greater clarity in managing fisheries that interact with these two species, and further our understanding of grenadier life history.

Reef location has a greater impact than coral bleaching severity on the microbiome of Pocillopora acuta

Coral reefs are increasingly threatened by heat stress events leading to coral bleaching. In 2016, a mass bleaching event affected large parts of the Great Barrier Reef (GBR). Whilst bleaching severity and coral mortality are usually monitored throughout major bleaching events, other health indicators, such as changes in microbial partners, are rarely assessed. We examined the impact of the 2016 bleaching event on the composition of the microbial communities in the coral Pocillopora acuta at Havannah Island Pandora reef, separated by 12 km on the inshore central GBR. Corals experienced moderate heat stress (3.6 and 5.3 degree heating weeks), inducing major bleaching (30–60%) at the coral community level. Samples were partitioned according to Symbiodiniaceae densities into three bleaching severity categories (mild, moderate, and severe). Whilst Symbiodiniaceae densities were similar at both reef locations, sequencing of the Symbiodiniaceae ITS2 and prokaryotic 16S rRNA genes revealed that microbial communities were significantly different between reefs, but not according to bleaching severity. Symbiodiniaceae composition was dominated by the genus Cladocopium with low abundances of Durusdinium detected in moderately and severely bleached colonies at both sites, despite site-specific ITS2 profiles. Bacterial communities were dominated by Proteobacteria and were almost entirely lacking the common Pocilloporid associate Endozoicomonas regardless of bleaching severity. Strikingly, only 11.2% of the bacterial Amplicon Sequencing Variants (ASVs) were shared between sites. This reef specificity was driven by 165 ASVs, mainly from the family Rhodobacteraceae. Comparison with previous studies suggests that the moderate heat stress experienced on the central GBR in 2016 caused the near-complete absence of Endozoicomonas. Symbiodiniaceae and bacteria (particularly Rhodobacteraceae) can be vertically transmitted in P. acuta, and larval propagation can be spatially restricted for this brooding species. Our results demonstrate that, unlike bleaching severity, location-specific factors and species-specific life history traits might have been paramount in shaping the P. acuta microbiome.

Local habitat factors and spatial connectivity jointly shape an urban insect community

As the world becomes more and more urbanized, it is increasingly important to understand the impacts of urban landscapes on biodiversity. Urbanization can change local habitat factors and decrease connectivity among local habitats, with major impacts on the structure of natural food webs. However, most studies have focused on single species, or compared rural to urban habitats, which do not inform us on how to design and manage cities to optimize biodiversity. To understand the local and spatial drivers of ecological communities within urban landscapes, we assessed the relative impact of local habitat factors (sunlight exposure and leaf litter) and spatial connectivity on an oak-associated herbivore community within an urban landscape. From the local habitat factors, leaf litter but not sunlight exposure was related to herbivore species richness, with leaf litter contributing to the maintenance of high species richness on isolated trees. Guilds and species differed strongly in their response to local habitat factors and connectivity, resulting in predictable variation in insect community composition among urban oaks. Taken together, our study shows an interactive effect of local and spatial factors on species richness and species composition within an urban context, with guild- and species-specific life histories determining the response of insects to urban landscapes. To maintain biodiversity in the urban landscape, preserving a dense network of local habitats is essential. Moreover, allowing leaf litter to accumulate can be a simple, cost-effective conservation management practice.

Beyond Bycatch: The Species Diversity of Tonguesole (Pleuronectiformes: Cynoglossidae) in Coastal Fisheries of the Tanintharyi Region, Southern Myanmar

Flatfishes in the family Cynoglossidae are an important coastal fishery in Myanmar. Due to the overlapping morphologies of multiple tonguesole species, caught both as bycatch from trawl fisheries and targeted specifically by small scale fishers, they are all marketed under a single local name, “khwayshar”. This presents a management challenge given the potential differences in the species-specific life-histories, population dynamics, fishing vulnerability and harvest rates. This study investigated the species diversity of tonguesole landings from coastal communities of the Tanintharyi Region of southern Myanmar. DNA barcoding was used to distinguish potentially 10 different species, of which five were identified to species level and five at the genus level. Unconfirmed genetic identifications were based on external morphology. The poor efficacy of DNA barcoding for tonguesole species identification resulted from the limited DNA barcode reference sequences available for the family Cynoglossidae in public databases. An asymmetric occurrence and relative abundance of the identified species in landing sites where samples were collected suggested that the most common species was Cynoglossus oligolepis (Bleeker, 1855), a new species record for Myanmar, followed by Cynoglossus lingua Hamilton, 1822. The results of the present study provide new information to characterise the tonguesole fishery as a first step in the development of management plans for the coastal fishery in Myanmar.

A Systematic Review of Within-Population Variation in the Size of Home Range Across Ungulates: What Do We Know After 50 Years of Telemetry Studies?

Studying the factors determining the sizes of home ranges, based on body mass, feeding style, and sociality level, is a long-standing goal at the intersection of ecology and evolution. Yet, how species-specific life history traits interact with different components of the landscape to shape differences in individual home ranges at within-population level has received much less attention. Here, we review the empirical literature on ungulates to map our knowledge of the relative effects of the key environmental drivers (resource availability, landscape heterogeneity, lethal and non-lethal risks) on the sizes of individual home ranges within a population and assess whether species' characteristics (body mass, diet, and social structure), account for observed variation in the responses of the sizes of individual home ranges to local environmental drivers. Estimating the sizes of home ranges and measuring environmental variables raise a number of methodological issues, which complicate the comparison of empirical studies. Still, from an ecological point of view, we showed that (1) a majority of papers (75%) supported the habitat productivity hypothesis, (2) the support for the influence of landscape heterogeneity was less pervasive across studies, (3) the response of cattle-type to variation in food availability was stronger than the response of moose-type, and (4) species-specific body mass or sociality level had no detectable effect on the level of support to the biological hypotheses. To our surprise, our systematic review revealed a dearth of studies focusing on the ecological drivers of the variation in the sizes of individual home ranges (only about 1% of articles that dealt with home ranges), especially in the later decade where more focus has been devoted to movement. We encourage researchers to continue providing such results with sufficient sample sizes and robust methodologies, as we still need to fully understand the link between environmental drivers and individual space use while accounting for life-history constraints.

Species-specific effects of long-term microplastic exposure on the population growth of nematodes, with a focus on microplastic ingestion

Microplastics (MPs; <5 mm) released into freshwaters undergo changes in their density that make them highly bioavailable to the fauna in the sediments. In fine sediments, nematodes account for up to 90% of the meiobenthic organisms and have an important position in benthic food webs, by connecting lower (bacteria) and higher (e.g., macrofauna, fish) trophic levels. Due to their high ecological relevance, ubiquitous occurrence and very high individual densities, nematodes can serve as bioindicators of environmental pollution and especially MP pollution, since the ingested microscopic particles can be easily detected in the transparent bodies of these organisms. Single-species toxicity tests with Caenorhabditis elegans have revealed dose-dependent inhibitory effects on reproduction in nematodes exposed for 96 h to relatively high concentrations of polystyrene (PS) beads. Thus, in this study, we examined whether longer-term multigenerational tests of nematodes under continuous PS bead exposure are able to reveal more subtle impacts of MPs on population growth and whether the observed effects can be linked to the species-specific life history traits of the nematodes.We therefore tested three bacterial-feeding nematode species (C. elegans, Acrobeloides nanus, Plectus acuminatus) by exposing them to 1.0-µm PS beads at an exposure concentration of 107 beads ml−1. The experiment was conducted in semi-fluid medium for 21–49 days depending on the life-cycle characteristics of each nematode species. Ingested PS beads were quantified by fluorescence microscopy observations. Population growth rates, carrying capacities as well as doubling time and the time at which the maximum sustainable yield was reached were used to assess the effects of PS bead exposure on nematode population dynamics.All three nematode species readily ingested 1.0-µm PS beads in semi-fluid medium, but the number of ingested PS beads varied between species. PS bead exposure significantly decreased the carrying capacity of C. elegans, whereas A. nanus populations grew significantly faster in the presence of the beads. Long-term multigeneration tests revealed more subtle impacts of MP on C. elegans than occurred following short-term exposure scenarios. Our results show that MP-induced changes in nematodes population dynamics can alter nematode communities, which in term may impact the benthic food web.

Disentangling heterogeneity and commonalities in nanotidal Mediterranean lagoons through environmental features and macrozoobenthic assemblages

A comprehensive set of physiographic and environmental features, anthropogenic pressures, as well as the soft-bottom macrozoobenthic assemblages were analyzed in seven nanotidal lagoons located in the Sardinia island (western Mediterranean Sea). We hypothesized that the common typology, and the restricted climatic and geographical settings of the studied lagoons could be reflected in a limited environmental and biological heterogeneity, leading to homogeneous or consistent patterns of ecological variability. To test our hypothesis, we (i) evaluated the extent of environmental heterogeneity of the lagoons under scrutiny to single out the main features accounting for most of the variation among them, and (ii) analyzed the within- and among-lagoons’ variation in macrozoobenthic assemblages to identify common patterns and/or a pool of recurrent species, peculiar to distinctive zones within individual lagoons. In terms of physiographic/environmental features, freshwater inputs, minimum salinity and chlorophyll-a were the best explanatory variables arranging the lagoons in three distinct clusters. The environmental integrative index (EII), based on the anthropogenic pressures, further allowed a significant separation of the lagoons, with Santa Gilla and Casaraccio being the most and the least impacted ones, respectively. In all of the investigated lagoons, the distribution of dominant macrozoobenthic species was mainly related to the land-sea gradient, the degree of confinement and the organic enrichment of sediments. Accordingly, we identified four major pools of most distinctive species (60 out of a total of 211 species/taxa found), including (i) opportunistic species, (ii) brackish/halolimnobic species, (iii) species typical of coastal sheltered waters, and (iv) properly marine species. We also identified differences in the macrozoobenthic community composition among lagoons, mostly attributable to the origin of the assemblages, and the dispersal ability and colonization adaptability of individual species. Our results show that single benthic macroinvertebrate species are useful indicators for characterizing the within-lagoon heterogeneity, whereas the assemblage's composition best highlights differences among lagoons. We, thus, raise the need for a thorough analysis of the benthic biodiversity, including the species-specific life history and autecology of the dominant species, to enhance our comprehension of local spatial patterns and the connectivity between lagoons. Overall, the present study demonstrates the usefulness of our approach to disentangle heterogeneity vs. commonalities within and among nanotidal lagoons.

Age, growth, and maturation of the Finetooth Shark, Carcharhinus isodon, in the Western North Atlantic Ocean

Many elasmobranchs display K-selected life history characteristics, making species-specific life history parameters critical to development of the most accurate stock assessment models. Age, growth, and maturity were examined for Finetooth Sharks, Carcharhinus isodon, in coastal waters of the Western North Atlantic Ocean (WNA) from Winyah Bay, South Carolina to Cape Canaveral, Florida. Ages were estimated from the vertebrae of 200 males and 232 females. The maximum observed age for males and females was 21.9 years and 22.3 years, respectively. Sizes ranged from 376 mm to 1174 mm fork length (FL) for males and 380 mm to 1282 mm FL for females. Significant differences were detected between the sexes necessitating sex-specific von Bertalanffy growth models yielding the following parameters: male, L∞ = 1140 mm FL, k = 0.29, L0 = 460 mm FL; female, L∞ = 1253 mm FL, k = 0.20, L0 = 464 mm FL. Median length (L50) at maturity was 1010 mm FL for males and 1043 mm FL for females corresponding to an age at median maturity (A50) of 6.6 years and 6.8 years, respectively. Significant differences in growth and maturity were detected between the current study and previously published parameters for the WNA and Gulf of Mexico (GOM). Observed differences in the WNA were driven by ageing methods, with current methods yielding significant differences in age estimates between studies. Results from the current study, in conjunction with previously published reproductive, tag-recapture and genetic studies, provide support for separate stocks between the WNA and GOM.

Thermogenic capacity in subterranean Ctenomys: Species-specific role of thermogenic mechanisms

One way to understand ecological patterns of species is to determine their physiological diversity on a large geographic and/or temporal scales, in a context of hierarchical biodiversity framework. In particular, macrophysiological studies analyze how environmental factors affect the physiology and therefore the distribution of species. Subterranean species are an excellent model for evaluating the large-scale effects of ambient temperature (Ta) conditions on thermal physiology and distribution, due to their extensive use of burrows that provide a relatively thermal stable environment. Species belonging to the genus Ctenomys are all subterranean and endemic of South America. Cold induced maximum metabolic rate (MMR), basal metabolic rate (BMR) and non shivering thermogenesis (NST) were analyzed, as well as the expression of uncoupled proteins (UCP) in brown adipose tissue (BAT). Biogeographical variables appear to have no effect MMR experimentally induced by cold condition within Ctenomys. Also, mechanisms of heat production are species-specific, varying from a combination of ST and NST to a complete use of shivering mechanisms. This pattern is correlated at tissue level, since species that use only ST show a smaller interscapular BAT patch, not detectable presence of UCP1 and low COX activity. Thus, other factors, including body mass, that constrain cold induced MMR could affect thermogenic variability among Ctenomys. In the evolutionary timescale, if low O2 levels of burrows impose a ceiling in cold induced MMR, and ST is enhanced due to species-specific life history traits, such as digging effort, then the observed differences among Ctenomys species might be explained.

Neogen: A tool to predict genetic effective population size (Ne ) for species with generational overlap and to assist empirical Ne study design.

Molecular genetic estimates of population effective size (Ne ) lose accuracy and precision when insufficient numbers of samples or loci are used. Ideally, researchers would like to forecast the necessary power when planning their project. neogen (genetic Ne for Overlapping Generations) enables estimates of precision and accuracy in advance of empirical investigation and allows exploration of the power available in different user-specified age-structured sampling schemes. neogen provides a population simulation and genetic power analysis framework that simulates the demographics, genetic composition, and Ne , from species-specific life history, mortality, population size, and genetic priors. neogen guides the user to establish a tractable sampling regime and to determine the numbers of samples and microsatellite or SNP loci required for accurate and precise genetic Ne estimates when sampling a natural population. neogen is useful at multiple stages of a study's life cycle: when budgeting, as sampling and locus development progresses, and for corroboration when empirical Ne estimates are available. The underlying model is applicable to a wide variety of iteroparous species with overlapping generations (e.g., mammals, birds, reptiles, long-lived fishes). In this paper, we describe the neogen model, detail the workflow for the point-and-click software, and explain the graphical results. We demonstrate the use of neogen with empirical Australian east coast zebra shark (Stegostoma fasciatum) data. For researchers wishing to make accurate and precise genetic Ne estimates for overlapping generations species, neogen facilitates planning for sample and locus acquisition, and with existing empirical genetic Ne estimates neogen can corroborate population demographic and life history properties.

Interspecific variation in tropical tree height and crown allometries in relation to life history traits

&lt;p&gt;&lt;strong&gt;Abstract.&lt;/strong&gt; Tree allometric relationships are widely employed to estimate forest biomass and production, and are basic building blocks of dynamic vegetation models. In tropical forests, allometric relationships are often modeled by fitting scale-invariant power functions to pooled data from multiple species, an approach that fails to reflect finite size effects at the smallest and largest sizes, and that ignores interspecific differences in allometry. Here, we analyzed allometric relationships of tree height (9884 individuals) and crown area (2425) with trunk diameter using species-specific morphological and life history data of 162 species from Barro Colorado Island, Panamá. We fit nonlinear, hierarchical models informed by species traits and assessed the performance of three alternative functional forms: the scale-invariant power function, and the saturating Weibull and generalized Michaelis-Menten (gMM) functions. The relationship of tree height with trunk diameter was best fit by a saturating gMM model in which variation in allometric parameters was related to interspecific differences in sapling growth rates, a measure of regeneration light demand. Light-demanding species attained taller heights at comparatively smaller diameters as juveniles and had shorter asymptotic heights at larger diameters as adults. The relationship of crown area with trunk diameter was best fit by a power function model incorporating a weak positive relationship between crown area and species-specific wood density. The use of saturating functional forms and the incorporation of functional traits in tree allometric models is a promising approach to improve estimates of forest biomass and productivity. Our results provide an improved basis for parameterizing tropical tree functional types in vegetation models.&lt;/p&gt;

Younger vampire bats (Desmodus rotundus) are more likely than adults to explore novel objects.

The effects of age on neophobia and exploration are best described in birds and primates, and broader comparisons require reports from other taxa. Here we present data showing age-dependent exploration in a long-lived social species, the common vampire bat (Desmodus rotundus). A previous study found that vampire bats regurgitated food to partners trapped in a cage. Interestingly, while only a few adult bats visited the trapped bat, in every trial all or most of the eight young males in the colony would visit the trapped bat without feeding it. To test whether this behavioral difference resulted from age class differences in exploration, we compared responses of the bats to a trapped conspecific versus an inanimate novel object. Some adults and young showed interest in trapped conspecifics, but only the young males explored the novel objects. Additional novel object tests in a second captive colony showed that higher rates of novel object exploration were shown by young of both sexes. Our results corroborate past findings from other mammals and birds that age predicts exploration. If age-dependent exploration is indeed adaptive, then the role of age as a predictor of exploration tendency should depend on species-specific life history traits. Finally, because younger vampire bats also appear to have higher exposure to pathogens such as rabies virus, there may be implications for pathogen transmission if younger and more exploratory vampire bats are more likely to feed on novel hosts.

Environmental effects on fine-scale spatial genetic structure in four Alpine keystone forest tree species.

Genetic responses to environmental changes take place at different spatial scales. While the effect of environment on the distribution of species' genetic diversity at large geographical scales has been the focus of several recent studies, its potential effects on genetic structure at local scales are understudied. Environmental effects on fine-scale spatial genetic structure (FSGS) were investigated in four Alpine conifer species (five to eight populations per species) from the eastern Italian Alps. Significant FSGS was found for 11 of 25 populations. Interestingly, we found no significant differences in FSGS across species but great variation among populations within species, highlighting the importance of local environmental factors. Interannual variability in spring temperature had a small but significant effect on FSGS of Larix decidua, probably related to species-specific life history traits. For Abies alba, Picea abies and Pinus cembra, linear models identified spring precipitation as a potentially relevant climate factor associated with differences in FSGS across populations; however, models had low explanatory power and were strongly influenced by a P.cembra outlier population from a very dry site. Overall, the direction of the identified effects is according to expectations, with drier and more variable environments increasing FSGS. Underlying mechanisms may include climate-related changes in the variance of reproductive success and/or environmental selection of specific families. This study provides new insights on potential changes in local genetic structure of four Alpine conifers in the face of environmental changes, suggesting that new climates, through altering FSGS, may also have relevant impacts on plant microevolution.

Species traits reveal effects of land use, season and habitat on the potential subsidy of stream invertebrates to terrestrial food webs

Adult aquatic insects with a terrestrial life-stage are important vectors transferring resources assimilated in freshwater environments to terrestrial consumers. Research on this linkage has focused particularly on how terrestrial environmental features affect dispersal of adult aquatic insects, and on the responses of terrestrial consumers. However, both the timing and extent of dispersal by adult aquatic insects are further regulated by their species-specific life history traits. We sampled aquatic invertebrates from nine streams in central Sweden, and assessed how the composition of key traits related to dispersal and life history varied between in-stream habitats (riffles, pools), seasons (autumn, spring), and among streams differing in catchment land use (forested, agriculture). Traits indicative of more limited adult dispersal (e.g. small adult size and weak flying strength), along with traits indicative of strongly pulsed peaks in emergence (e.g. univoltinism and well-synchronised emergence) were all more abundant in the agricultural than forested streams in the autumn. However, these differences had disappeared by late spring, possibly reflecting early emergence by the univoltine taxa that dominated the agricultural stream communities and/or elevated mortality in the agricultural streams. Riffles supported higher abundances of insects with strongly flying adults, whereas traits associated with more limited dispersal were characteristic of insect assemblages in pools, which also supported the highest proportion of invertebrates completely lacking an adult flying stage. This result is likely to have implications at larger scales, given the dominance of soft-bottomed pool habitats and scarcity of riffles in many agricultural landscapes. Overall, our analysis indicates that while overall production of aquatic invertebrates with a winged adult was greater in agricultural streams, availability of this productivity for terrestrial consumers is more likely to be spatially restricted closer to the stream channel, and potentially also more temporally pulsed .