Conservation Status Of Species Research Articles

Toward a common approach for assessing the conservation status of marine turtle species within the european marine strategy framework directive

Environmental policies, including the European Marine Strategy Framework Directive (MSFD), generally rely on the measurement of indicators to assess the good environmental status (GES) and ensure the protection of marine ecosystems. However, depending on available scientific knowledge and monitoring programs in place, quantitative GES assessments are not always feasible. This is specifically the case for marine turtle species, which are listed under the Biodiversity Descriptor of the MSFD. Relying on an expert consultation, the goal of this study was to develop indicators and a common assessment approach to be employed by European Union Member States to evaluate the status of marine turtle populations in the frame of the MSFD. A dedicated international expert group was created to explore and test potential assessment approaches, in coherence with other environmental policies (i.e. Habitats Directive, OSPAR and Barcelona Conventions). Following a series of workshops, the group provided recommendations for the GES assessment of marine turtles. In particular, indicators and assessment methods were defined, setting a solid basis for future MSFD assessments. Although knowledge gaps remain, data requirements identified in this study will guide future data collection initiatives and inform monitoring programs implemented by EU Member States. Overall this study highlights the value of international collaboration for the conservation of vulnerable species, such as marine turtles.

The discovery of a new giant legume tree species in a severely fragmented landscape underscores the alarming threats to the biodiversity of the Brazilian Atlantic Forest

AbstractThe Brazilian Atlantic Forest domain has one of the highest levels of plant species endemism, but the intense historical fragmentation across the coastal Atlantic tropical rain forest has reduced the original vegetation to < 10% and an island-like, patchy landscape. Despite such unprecedented vegetation loss, biogeographically and phylogenetically interesting discoveries in different angiosperm families have been newly reported for the Atlantic Forest in recent years. Here, we show that species discovery in the legume family (Fabaceae) across the Atlantic Forest has counter-intuitively been increasing. Since 1850, more than half of the legume species described for the domain are endemic, and the total number of endemic species has since increased almost four-fold, resulting in the current record of 442 endemic legumes. One such endemic is a new papilionoid legume, only known from a few giant trees that remained misidentified for 70 years since it was first collected. This new species, described here under the name Dipteryx hermetopascoaliana, based on morphological, geographical and molecular evidence, represents the first endemic species to the genus in the Atlantic Forest. We provide a complete morphological description, distribution map, preliminary conservation status and illustration of the new species. The phylogenetic isolation of D. hermetopascoaliana as sister to all other species of the genus and its restricted distribution in a severely fragmented landscape isolated by sugarcane monocultures in north-eastern Brazil are a signature of how critically endangered the biodiversity of the Atlantic Forest is.

Diversity, distribution, and conservation status of forest tree species in cross river state, Nigeria

Diversity, distribution, and conservation status of forest tree species in cross river state, Nigeria

Status and distribution of hoolock gibbon in the newly established Indawgyi Biosphere Reserve: Implication for protected area management

Protected areas are an important tool for conserving biodiversity, if they are managed appropriately. The effectiveness of protected area management can be evaluated by understanding the conservation status of indicator species. Here, we investigate the Vulnerable eastern hoolock gibbon Hoolock leuconedys in forest blocks in Indawgyi Biosphere Reserve, Myanmar. We assess the species’ status, the influence of human disturbance and topographic factors and evaluate the reserves management. Surveys of gibbons were undertaken between October 2018 and May 2019 using an auditory sampling technique at 59 sites, covering 95 km 2 . We applied Distance Sampling techniques to estimate the number and density of gibbon groups and investigate if gibbon density were influenced by landscape and human activities. We estimated average gibbon density to be 0.71 groups per km 2 . Our results suggests that Indawgyi Biosphere Reserve holds a generally low density of eastern hoolock gibbon in Myanmar, compared to other similar sites in the region. Gibbon density was influence negatively by slope and elevation and positively by distance from villages. The current management interventions in Indawgyi Biosphere Reserve are not sufficient to conserve gibbons and reducing human disturbance is a conservation priority. We make management recommendations to improve protection of the gibbons, as well as other wildlife species.

Assessing Identification Accuracy of Research Grade iNaturalist Observations in Lichens and other Taxonomically Difficult Organisms

Community science-generated biodiversity data can provide essential information for understanding species distributions, behaviors and conservation statuses. However, their utility can be limited due to high uncertainty and variability in quality, especially for small taxonomically difficult organisms like fungi and insects. One important set of community-generated data that are increasingly used by scientists are Research Grade (RG) iNaturalist observations. These observations are aggregated into the Global Biodiversity Information Facility database. Here we assessed the accuracy of RG lichen observations in iNaturalist. Lichens are mutualistic symbioses formed between fungi and a photosynthetic partner, either algae or cyanobacteria that occur in every terrestrial ecosystem on the planet (Brodo et al. 2001). They are sensitive indicators of environmental health, especially air quality, and provide essental food and nesting material for animals, along with performing many other ecosystem services (Allen and Lendemer 2021, Brodo et al. 2001, Nimis et al. 2002). We examined hundreds of observations and determined if the identification was correct, if it was not possible to identify the observation given the data provided, or if the identification was incorrect. Identification accuracy of selected species varied widely, from zero observations with enough information for correct identification (e.g., Rhizocarpon geographicum and Cladonia chlorophaea) to 100% correct identifications (e.g., Cetradonia linearis and Physconia subpallida, McMullin and Allen 2022). Most frequently, species that require microscopic examination or chemical tests for accurate identification were unable to be verified versus those that require only macromorphology. We provide a series of suggestions for best practices to improve the quality of RG observations and thus the utility of community-generated observation data for taxonomically difficult organisms.

Using population surveys and models to reassess the conservation status of an endemic Amazonian titi monkey in a deforestation hotspot

AbstractAssessing the conservation status of species is essential for implementing appropriate conservation measures. A lack of evidence of threats, rather than showing an absence of impacts, could reflect a lack of studies on how human activities could result in species population declines. The range of Prince Bernhard's titi monkey Plecturocebus bernhardi is restricted to the Arc of Deforestation, a deforestation hotspot in south-eastern Amazonia. Despite this, it is categorized as Least Concern on the IUCN Red List. To reassess the conservation status of P. bernhardi, we carried out surveys during 2015–2017 to delimit the geographical distribution of the species and estimate its population density and abundance. We then used spatial predictive modelling to examine future habitat and population loss within its range. Plecturocebus bernhardi occurs over an area of 131,295 km2. Its mean group size was 2.8 individuals/group and its density 10.8 individuals/km2 and 3.8 groups/km2. Habitat loss was estimated to be 58,365 km2 (44.5% of its current range) over the next 24 years (three P. bernhardi generations) under a conservative governance model of deforestation and 105,289 km2 (80.2%) under a business-as-usual model. These numbers indicate that P. bernhardi is threatened and should be categorized as Vulnerable, at least, using the IUCN Red List criteria. We recommend the reassessment of other Least Concern primate species from the Arc of Deforestation using a similar approach.

A roadmap for ladybird conservation and recovery.

Ladybirds (Coleoptera: Coccinellidae) provide services that are critical to food production, and they fulfill an ecological role as a food source for predators. The richness, abundance, and distribution of ladybirds, however, are compromised by many anthropogenic threats. Meanwhile, a lack of knowledge of the conservation status of most species and the factors driving their population dynamics hinders the development and implementation of conservation strategies for ladybirds. We conducted a review of the literature on the ecology, diversity, and conservation of ladybirds to identify their key ecological threats. Ladybird populations are most affected by climate factors, landscape composition, and biological invasions. We suggest mitigating actions for ladybird conservation and recovery. Short-term actions include citizen science programs and education, protective measures for habitat recovery and threatened species, prevention of the introduction of non-native species, and the maintenance and restoration of natural areas and landscape heterogeneity. Mid-term actions involve the analysis of data from monitoring programs and insect collections to disentangle the effect of different threats to ladybird populations, understand habitat use by taxa on which there is limited knowledge, and quantify temporal trends of abundance, diversity, and biomass along a management-intensity gradient. Long-term actions include the development of a worldwide monitoring program based on standardized sampling to fill data gaps, increase explanatory power, streamline analyses, and facilitate global collaborations.

What's the effectiveness of stocking actions in small creeks? The role of water discharge behind hatchery trout downstream movement.

Fish stocking to enhance freshwater fisheries or to improve the conservation status of endangered fish species is a common practice in many countries. Little is known, however, of the effectiveness of these practices in spite of the high efforts and investments required. The movement of subadult/adult hatchery-released brown trout Salmo trutta L. was studied by passive telemetry in a small tributary of Lake Lugano (i.e., Laveggio Creek, Canton Ticino, Switzerland). Hatchery fish, together with some resident wild individuals sampled during electrofishing surveys, were tagged with Passive Integrated Transponders (PIT) tags. Hatchery fish were released upstream and downstream a submersible monitoring antenna, which was anchored to the streambed in a pass-over orientation. The number of hatchery fish detected daily by the antenna (divided between fish released upstream and downstream the antenna) was analyzed in relation to the daily water discharge, to search for similar patterns in their fluctuation over time. Only the movement of fish released upstream the antenna displayed a significant relationship with water discharge, with the highest number of fish detected during periods of high-water flow, occurring after heavy rains. High-water discharge events had a significant role in hatchery trout downstream movement in our study site, likely acting as a driver for the downstream migration to Lake Lugano. Such events contributed to the poor effectiveness of stocking actions in this small tributary, providing further evidence against stocking strategies based on subadult/adult fish.

Conservation status of the world’s carnivorous mammals (order Carnivora)

The conservation of carnivores (order Carnivora) can lead to the conservation of other species as well as entire ecosystems since they play an important ecosystemic role. However, their predatory behaviour has caused many of these species to experience marked population declines worldwide and they may therefore face greater anthropogenic threats than other animal groups. To examine the conservation status, population trends, distribution patterns, habitats and threats of all extant species belonging to this order (N = 290), we collected data from the International Union for the Conservation of Nature's Red List. In addition, we calculated the Red List Index (RLI) to measure the change in extinction risk of species over time. Carnivores are more threatened than mammals in general (26.9% of endangered species vs. 22.7%) and have a significantly higher proportion of species with declining populations (48.3% vs. 31.9%). Eupleridae, Ursidae and Felidae families have the worst conservation status. Between the 1990s and 2000s, most families suffered a considerable decline in their RLI value, the most notable being Felidae. The greatest numbers of threatened carnivore species are found in forest, shrubland and grassland habitats. East and South Asia hold great numbers of carnivore species as well as the highest proportion of threatened and declining species. Hunting and trapping of terrestrial animals, along with habitat loss (caused by deforestation and agricultural expansion), pose the main threats to the Carnivora order. Our findings indicate that, within mammals, the conservation of carnivores should be a priority, and conservation measures directed at this group should be undertaken or increased as a matter of urgency.

Distributional patterns of two sympatric blue crabs (Callinectes) and the implications for conservation management at the South-west Atlantic subtropical shelf

ABSTRACT Changes in species distribution patterns allow managers to monitor the conservation status of species. This study investigated the distribution and segregation in the blue crabs Callinectes danae and Callinectes ornatus in the South-west Atlantic subtropical shelf. We characterized the crabs’ abundance and related it to environmental factors. Abundance expressed as catch per unit effort estimates deviated significantly from crabs’ abundances assessed by years: in Year 1, station S7 showed the highest abundance for C. danae and the lowest for C. ornatus. In Year 2, the abundance of species only differed significantly in station S2. Summer was the season with the highest abundance of C. danae and spring of C. ornatus. Temperature was the environmental factor that modulated the distribution of blue crabs. The crabs presented different spatial and temporal distribution patterns, although there was no evident segregation between species. This ecological study indicates a potential site in the South-west Atlantic subtropical shelf to maintain the reproductive viability of the population.

The dark side of the Common Agricultural Policy

The dark side of the Common Agricultural Policy

Distribution and conservation status of threatened endemic amphibians within the Aspromonte mountain region, a hotspot of Mediterranean biodiversity

Amphibian biodiversity loss in recent years has exceeded that of all other groups of vertebrates. In this context, biodiversity hotspots represent priority targets for conservation in amphibian populations. However, little information is available on the distribution and conservation status of amphibian species within most biodiversity hotspots. Here, we characterized the distribution and conservation status of four threatened endemic amphibians (Bombina pachypus, Salamandra salamandra gigliolii, Salamandrina terdigitata, and Rana italica) in the Aspromonte Mountain region, a biodiversity hotspot in southern Italy where the conservation status of amphibians is almost unexplored. We conducted an intensive field survey of 507 potential breeding sites spanning over 2,326 km2. We found that all four species were widespread in the study area. We observed 337 species occurrences: 63 for S. s. gigliolii, 29 for S. terdigitata, 84 for B. pachypus, and 161 for R. italica. Species distribution analysis revealed that S. s. gigliolii and R. italica populations had an extended and homogenous distribution. Conversely, S. terdigitata showed a dispersed pattern, with long distances among breeding sites, and B. pachypus an aggregated pattern, associated with the availability of suitable artificial habitats. On the other hand, we reported a decrease in B. pachypus occurrence in its natural habitats, which reflects a negative trend of its populations. Overall, our results provide an encouraging framework for the conservation of amphibian populations in this area, but highlight the low coverage of threatened amphibian populations in protected areas, highlighting the need for a reassessment of conservation policies and spatial conservation planning for the Aspromonte region.

EDNA metabarcoding of decapod crustaceans across Indonesian seas has implications for biodiversity conservation and fisheries sustainability

Environmental DNA (eDNA) methods are increasingly viewed as alternate or complementary approaches to conventional capture-based surveys for marine conservation and fisheries management purposes, especially at large spatial scales in mega-biodiversity regions such as Indonesia. Decapod crustacean distribution and diversity across Indonesia are still poorly known, even for economically important fisheries commodities. This study assessed coral reef associated decapod diversity and distribution by sampling 40 sites in three regions (West, Central, East), representing 17 provinces and 10 Fisheries Management Areas (FMAs) across Indonesia, with a special focus on the blue swimming crab Portunus pelagicus. DNA sequencing (Illumina iSeq100) data were analysed in mBRAVE (Multiplex Barcode Research And Visualization Environment) yielded 406 OTUs belonging to 32 families, with 47 genera and 51 species identified. The number of families identified was highest in the Central region (25), while the most genera (31) and species (36) were identified in the West region. Alpha diversity did not differ significantly between regions or provinces, while Beta diversity differed significantly between provinces but not between regions. Our results also showed 31 species are possibility native based on the distribution meanwhile 12 species do not appear to have been recorded based of SeaLifeBase or WorMS. While providing a reference for further exploration of Indonesian coastal and small island decapod biodiversity, the high proportion of unidentified taxa calls for concerted efforts to develop and maintain reference specimen and sequence repositories and expand species conservation status assessments. The economically important decapod crustaceans identified in this study included three crabs (Charybdis anisodon, Charybdis japonica, Portunus pelagicus), a freshwater prawn (Macrobrachium nipponense), a lobster (Panulirus stimpsoni) and two penaeid shrimps (Mierspenaeopsis hardwickii and Trachysalambria aspera). For most decapod taxa, observed patterns indicate management under existing provincial and/or FMA level management structures is appropriate. Furthermore, the data can inform science-based fisheries management strategies, in particular for P. pelagicus.

Where wolves were: setting historical baselines for wolf recovery in Spain

AbstractReference conditions are necessary to assess the conservation status of species, understand their declines, and manage their recovery. Historical documents offer large amounts of records of a wide variety of species, which may be used to generate reference baselines on the historical distribution range of species. We collected information on the Iberian wolf Canis lupus signatus presence or assumed absence for 6734 localities in Spain from the geographical dictionary edited by Pascual Madoz in the mid‐19th century. We used probabilistic distribution models to estimate the wolf historical range with unprecedented detail, allowing the quantification of the historical reduction in occupancy area. Wolf records were widely distributed in mid‐19th century Spain, being present in all its mainland provinces. The probability of occurrence was positively associated with landscape roughness and negatively with human population density and the landscape suitability for agriculture. The area estimated to be occupied by wolves ranged between 212 200 and 317 600 km2, depending on the approach used to set cut‐off values from the predictions. Our estimations represented an average range reduction of 68% between the mid‐19th century and present time, resulting in the current restriction of the species to the country's north‐western quadrant. The putative recent recovery of the wolf in Spain consists mainly of the accumulation of wolf records in areas where the species had persisted and the recolonization of some peripheral areas, but there is no indication of widespread recovery of the historical distribution range. We show that the compilation of historical species records allows producing baseline range scenarios with much higher resolution than usually available to inform species status and set recovery targets, an approach that can be implemented in other areas and taxa.

Detection and Monitoring of Riverine Dragonfly of Community Interest (Insecta: Odonata): Proposal for a Standardised Protocol Based on Exuviae Collection

Collecting quantitative data on insect species occurrence and abundance is a major concern to document population trends. This is especially the case to assess the conservation status of species listed in the European Habitats Directive and to assess the efficiency of mitigation measures with a view to achieve the “no net loss of biodiversity” goal for protected species. However, at present, populations of riverine dragonflies listed in the Habitats Directive and protected under French national law are poorly quantified and monitored. Exuviae collection could be used for such monitoring but a standardised protocol is lacking. We here proposed and tested such a protocol to monitor riverine dragonfly populations through exhaustive exuviae collection along river bank transects. To define the optimal transect size and number of visits, ninety-eight 100 m-long transects divided into 10 m-long plots were monitored on three rivers in southern France. Each transect was visited three times over the emergence period. In the course of each visit, all the exuviae along transects were collected and identified. From our results, we recommend collecting exuviae along 100 m of river bank in the course of two visits in order to both maximise the species detection and minimise the monitoring cost.

Hesperis burdurensis (Brassicaceae), a new species from Southwest Anatolia

A new species, Hesperis burdurensis (Brassicaceae), from southwest Anatolia is described and illustrated. The species is similar to Hesperis tosyaensis and H. pisidica but distinguished from these species by its leaf shape, petal size, and trichome features. Herein, an identification key with a description of the new species is provided. Scanning electron microscope (SEM) observations of pollen grains and trichome types are presented. Comments on the habitat, ecology, phenology, distribution, and conservation status of the new species are also provided.

Harveya kiangombensis (Orobanchaceae), a new parasitic species from Kenya, East Africa

A new holoparasitic species of Orobanchaceae, Harveya kiangombensis, is here described and illustrated. This species is easily distinguished from the closely related H. liebuschiana by its glandular pubescent pedicels, the position of its flowers that occur singly in the leaf axils, and its acute calyx lobes. An assessment of the conservation status of the new species is provided.

Contemporary genetic structure of Xantus's Hummingbird (Basilinna xantusii) in the Baja California peninsula

Genetic structure and phylogeographic patterns of natural populations are of great importance in assessing the conservation status of species. These population properties can be estimated using molecular markers of either mitochondrial DNA (mtDNA) or nuclear DNA (nDNA) to understand the historical, ecological and dispersal patterns that influence genetic exchange within and between populations. Basilinna xantusii is a sexually dimorphic hummingbird endemic to the Baja California Peninsula (BCP). It comprises three ancestral mitochondrial lineages linked to vicariant events, late Pleistocene climate changes and the geographical distribution of oases. This study aimed to determine and understand the current population genetic structure of this hummingbird. The genotypes of 16 microsatellite loci from 100 individuals collected across the geographical range of this species were compared with mtDNA sequences previously published. Cluster analyses identified five populations, two with almost no genetic admixture in the northern part of the BCP and three others with varying levels of admixed ancestry across the BCP. In San José de Magdalena, at the northernmost end of the range of Xantus's Hummingbird, 40% of individuals collected belong to one genetic cluster and the remaining 60% to another, both genetic clusters showing very little admixed ancestry. We hypothesize that, despite being in sympatry, these individuals do not interbreed, unlike the other populations where individuals showed ancestry coefficients of the other genetic groups. The philopatric behaviour of males and the long‐range dispersal capacity of females probably determine the observed genetic differentiation pattern. The mito‐nuclear discordance detected could be due to the molecular markers used and to female‐biased dispersal. Gene flow is asymmetric in this species, being greater from north to south than vice versa, which is probably related to differences in the seasonality of precipitation across the BCP and to urbanization of the oases.

Combining surface and soil environmental DNA with artificial cover objects to improve terrestrial reptile survey detection.

Reptiles are increasingly of conservation concern due to their susceptibility to habitat loss, emerging disease, and harvest in the wildlife trade. However, reptile populations are often difficult to monitor given the frequency of crypsis in their life history. This difficulty has left uncertain the conservation status of many species and the efficacy of conservation actions unknown. Environmental DNA (eDNA) surveys consistently elevate the detection rate of species they are designed to monitor, and while their use is promising for terrestrial reptile conservation, successes in developing such surveys have been sparse. We tested the degree to which inclusion of surface and soil eDNA sampling into conventional artificial-cover methods elevates the detection probability of a small, cryptic terrestrial lizard, Scincella lateralis. The eDNA sampling of cover object surfaces with paint rollers elevated per sample detection probabilities for this species 4-16 times compared with visual surveys alone. We readily detected S. lateralis eDNA under cover objects up to 2 weeks after the last visual detection, and at some cover objects where no S. lateralis were visually observed in prior months. With sufficient sampling intensity, eDNA testing of soil under cover objects produced comparable per sample detection probabilities as roller surface methods. Our results suggest that combining eDNA and cover object methods can considerably increase the detection power of reptile monitoring programs, allowing more accurate estimates of population size, detection of temporal and spatial changes in habitat use, and tracking success of restoration efforts. Further research into the deposition and decay rates of reptile eDNA under cover objects, as well as tailored protocols for different species and habitats, is needed to bring the technique into widespread use.

Gladiolus alanyensis (Iridaceae), a new species from southern Turkey in the eastern Mediterranean basin

Gladiolus alanyensis is described and illustrated as a new species from Alanya, Antalya Province in South Anatolia, Turkey. In this study, the diagnostic morphological features, distribution, habitat and ecological characteristics, and conservation status of the new species are reported. It grows in calcareous areas and is morphologically close to G. anatolicus. Affinities and differences to other species such as G. triphyllus and G. humilis are also commented. Seed micromorphological characteristics of G. alanyensis, G. anatolicus and G. humilis are examined and compared using LM and SEM analyses.