Abundant Species Research Articles

The sweet path of Hansel and Gretel: pollination system of Masdevallia hortensis (Orchidaceae: Pleurothallidinae) in a cloud montane forest of the Cordillera Occidental, in Colombia

Pollination by deception is assumed as the general rule among pleurothallid orchids. However, considering the exceptional diversity of this group (44 genera and over 5100 species) and the relatively limited number of available studies (pollination ecology has been assessed in only 17 genera), generalized trends about their pollination systems might disregard a wide variety of specific life-history traits and inconspicuous honest signals/rewards for pollinators. The few known associations of pleurothallid orchids with a large assortment of fly taxa further support the assumption of generalized pollination by deception. We investigated the natural pollination system of Masdevallia hortensis, a strictly endemic species of cloud forests in the Western Andes of Colombia. This species exhibited a sophisticated and unique pollination mechanism, producing sugary secretions in the lateral sepals along purple dotted patches, fed upon by different visiting species of fruit flies (Drosophilidae). The sucrose concentration in these secretions varied throughout the day and significantly decreased after pollinaria removal. Visiting fruit flies appeared to be guided towards a chamber between the mobile lip and the column, by dotted lines in the lateral sepals. During visitations, individuals of the most abundant species in our observations (Drosophila sp. 1) were singly entrapped in the chamber until eventually freeing themselves with the pollinaria attached to their bodies. We also demonstrated that M. hortensis is strictly self-incompatible, which makes fly pollination an essential process for the maintenance of natural populations of the species. The flowers of M. hortensis offer rewards for visiting insects, an aspect that should be thoroughly evaluated before making generalizations. In this way, we urge integrative ecological studies to understand the reproductive evolutionary patterns in this group of orchids.

Exploring Fish Biodiversity and the Socioeconomic Status of Fishers in the Karatoya River, Sadar Upazila, Panchagarh District, Bangladesh

These studies were carried out to study species diversity of fishes and socio-economic conditions of the fishers of Karatoya River at Sadar upazila in Panchagarh district Bangladesh. Pertinent information was collected from 65 fishermen, who were directly engaged in catching fish around the study area for six months from December 2022 to June 2023. The results demonstrated that 41 fish species belonging to 8 orders and 15 families were found in the Karatoya River. Cypriniformes was found as the most dominant order, constituting 50.6% of the total fish population, considering species abundance, and Siluriformes constituting 12.7% and Perciformes constituting 12.0%, which were occupied the second and third position in abundance. The order Channiformes, Clupeiformes, Mastacembeliformes and Tetraodontifomres were constituted 6.6%, 6.0%, 4.8%, and 4.2%, respectively. Beloniformes constituted the lowest number of species (30%). It was observed that many fish species in the Karatoya River were severely impacted by the environmental and human-induced hazards. However, the age of the fishermen was ranged from 22 to 65 years. The Hindus (70%) were featured to be the highest percentage than the Muslims (30%), while no Christians and Buddhists were found. Various levels of education were documented in the study area, where majority of the fishermen were illiterate (69%), up to primary 18%, up to secondary 8% and the small portion (5%) were above secondary. The fishermen’s housing status was predominated by kaccha (66%), followed by semi pacca (23%) and pacca (11%). Majority of the fishers were landless (39%), whereas 15% fishers had 1-10 decimal (dec.) lands, 18% had 11-20 dec., 11% had 21-30 dec., 14% had 31-40 dec. and badly 3% of them had possessed >40 dec. lands. Among the fishermen, 45% of them were found to be involved in fishing activities, 40% in agriculture and 15% in sand business as day-to-day labour. There were 4 types of nets, 3 types of traps, 4 types of spears and 2 types of line fishing operated in this area. The study revealed that the fisheries production was not sufficient according to the demand. The reasons behind this might be due to the fact that the fishers around the Karatoya River were mainly poor, illiterate, lack of proper training and also nonexistence of consciousness of their sanitary and health care facilities. Therefore, it is very important to provide the required Organizational and Institutional help, support and extension facilities for the enhancement of fish biodiversity as well as development of sustainable livelihood of fishers in the Karatoya River as well.

Opening the species box: What parsimonious microscopic models of speciation have to say about macroevolution.

In the last two decades, lineage-based models of diversification, where species are viewed as particles that can divide (speciate) or die (become extinct) at rates depending on some evolving trait, have been very popular tools to study macroevolutionary processes. Here, we argue that this approach cannot be used to break down the inner workings of species diversification and that "opening the species box" is necessary to understand the causes of macroevolution, but that too detailed speciation models also fail to make robust macroevolutionary predictions. We set up a general framework for parsimonious models of speciation that rely on a minimal number of mechanistic principles: (i) reproductive isolation is caused by excessive dissimilarity between genotypes; (ii) dissimilarity results from a balance between differentiation processes and homogenizing processes; and (iii) dissimilarity can feed back on these processes by decelerating homogenization. We classify such models according to the main homogenizing process : (1) clonal evolution models (ecological drift), (2) models of genetic isolation (gene flow) and (3) models of isolation by distance (spatial drift). We review these models and their specific predictions on macroscopic variables such as species abundances, speciation rates, interfertility relationships or phylogenetic tree structure. We propose new avenues of research by displaying conceptual questions remaining to be solved and new models to address them: the failure of speciation at secondary contact, the feedback of dissimilarity on homogenization, the emergence in space of breeding barriers.

Microbial community dynamics in blood, faeces and oral secretions of neotropical bats in Casanare, Colombia

Bats are known reservoirs for a wide range of pathogenic microorganisms, including viruses, bacteria, fungi, helminths, and protozoa, which can be transmitted and infect other zoonotic organisms. Various studies have utilised next-generation sequencing (NGS) to describe the pathogens associated with bats. Although most have characterised microbial communities in specific body fluids, few have analysed the composition and diversity of these microbial communities across different body fluids at the individual level. In this study, we employed two next-generation sequencing techniques: amplicon-based sequencing of the V4 hypervariable region of the 16S- and 18S-rRNA genes and viral metagenomics, to describe the prokaryotic, eukaryotic, and viral communities present in blood, faeces, and oral swab samples collected from two genera of bats (Carollia and Phyllostomus) in the department of Casanare, eastern Colombia. A total of 60 samples corresponding to the three bodily fluids were processed and analysed. The results indicated that the microbial communities across the body fluids were mainly composed of bacteria, fungi, protozoa, and various DNA and RNA viruses, showing a variability of microbial genera and species. The abundances, diversity metrics, and correlations of these microorganisms displayed patterns associated with bat genus and body fluids, suggesting that the ecological characteristics of these microbial communities may be influenced by the ecological and physiological traits of the bats. Additionally, we found similar community compositions of bacteria, some fungal genera, and viruses in the three body fluids, indicating a possible circulation of these microbes within the same bat. This could be due to microbial movement from the gut microbiota to other physiological systems or transmission via blood-feeding vectors. Furthermore, our results revealed the presence of various microbes of public health concern, including Bartonella spp., Mannheimia haemolytica, Rhodotorula spp., Piroplasmida spp., Toxoplasma gondii, Alphacoronavirus spp., and Bat circovirus. The abundance of these pathogenic microbial species across the three bodily fluids suggests potential transmission routes from bats to other organisms, which may contribute to the emergence of zoonotic disease outbreaks. These findings highlight the variability of microorganisms present within the same bat and the different pathogen-host interactions that may regulate the presence and transmission of these zoonotic microbes. Further research is required to elucidate the genomic features, ecological interactions, and biological activities of these microbial communities in bats.

Diversity and Population of Ducks and Geese in Keibul Lamjao National Park (KLNP) in Manipur, India

As a part of the Asian Waterbird Census (AWC), surveys on ducks and geese were made at five (5) major waterbird congregation sites of Keibul Lamjao National Park (KLNP) during 2020-2024. A total of 18 species of ducks and two species of geese belonging to the family of Anatidae were recorded during the period. The duck species includes 14 migratory and 4 resident species and the two migratory geese species. Lesser Whistling Duck Dendrocygna javanica was the most abundant and dominant species in terms of population followed by Gadwall Anas strepera and Red - crested Pochard Netta rufina and minimum value was observed in Greylag Goose Anser anser. The Critically Endangered Baer’s Pochard Aythya fuligula was recorded in the year 2023 at Pabot Chingmang site (2 individuals). Another two globally Near threatened (NT) Ferruginous Pochard Aythya nyroca and Falcated Duck Anas falcata have been recorded here.

Rubisco at interfaces I: Conformational flexibility enhances air-water interface and foam stabilization

Rubisco exists in all green leaves and is the most abundant protein species on earth. Extraction methods can affect the molecular conformation of Rubisco, while its influence in the behavior of Rubisco at the air-water interface and foam stabilization is largely unknown. This work focuses on elucidating the role of the Rubisco molecular structure in stabilizing the air-water interface and the multiphase system of foam. Rubisco was extracted from spinach using ultrafiltration (RU) and acid precipitation-alkaline redispersion (RA), respectively. Protein molecular properties were evaluated using SDS-PAGE, DSC, fluorescence spectrometry, and size and zeta-potential measurements. Surface adsorption behavior was measured in the millisecond and longtime regime. Surface mechanical properties were assessed with large amplitude oscillatory dilatation (LAOD) and large amplitude oscillatory shear (LAOS), and LAOD results were analyzed by stress decomposition. Interfacial structures were characterized by imaging Langmuir-Blodgett films with atomic force microscopy. Protein foaming properties were evaluated by whipping. We found that RU was primarily native and more flexible than RA, which was fully denatured and aggregated. Consequently, RU diffused faster to air-water interface (576 ms) than RA (926 ms), and formed stiffer soft solid-like air-water interfaces (Gi’ = 56.7 mN/m; Ed’ = 98.2 mN/m) than RA (Gi’ = 39.6 mN/m; Ed’ = 84.3 mN/m). RU also formed denser and thicker surfaces with higher network connectivity than RA. These advantages endow RU with much higher foam stability (152 min half-life time) than RA (94 min). Our study reveals a clear relationship between the molecular conformation of Rubisco and its air-water interface and foam stabilization properties. It might also guide the development of improved extraction/treatment methods to obtain ideal molecular structures of proteins for foam stabilization.

Ultrasensitive ECL immunoassay for CA15-3 via self-enhanced L012-loaded ZnNi-MOF as an emitter and CeO2–Pt as a co-reaction accelerator

Improvement in the sensitivity and accuracy of ECL-based biosensors, to a great extent, depends on the fabrication of high-performance electrochemiluminescence (ECL) sensors. Herein, polyethyleneimine (PEI)-grafted bimetallic ZnNi metal-organic framework (ZnNi-MOF/PEI) nanospheres were synthesized to prepare a L012-based ECL immunosensor for detecting carbohydrate antigen 15-3 (CA15-3). The introduced PEI was utilized not only as a bridging element for L012 luminophore and detection antibody (Ab2) immobilization but also as a co-reactant for generating the self-enhanced ZnNi-MOF/PEI-L012@Ab2 ECL signal probe. Furthermore, Pt nanoparticle-functionalized CeO2 nanorods (CeO2–Pt) featuring high-efficiency electrocatalytic properties, as a co-reaction accelerator, could catalyze H2O2 to generate abundant reactive oxygen species (ROS), further augmenting the ECL signal of ZnNi-MOF/PEI-L012@Ab2. In the presence of CA15-3 antigen, the capture antibody (Ab1)-conjugated CeO2–Pt complex (CeO2–Pt@Ab1) and ZnNi-MOF/PEI-L012@Ab2 would get closer to each other, with the formation of a “signal-on” sandwich-type ECL immunosensor. The ZnNi-MOF-assisted ECL biosensor achieved a detection limit of down to 5.75✕10−5 U mL−1. This work shows distinguished potential for measuring low levels of biomarkers that may help in the clinical diagnosis of breast cancer.

Biodiversity and plant-insect interactions in fragmented habitats: A systematic review

Abstract Fragmentation is threatening insect biodiversity and intricate interactions in various ecosystems. Ecological interactions – especially those involving plants and insects – are significantly impacted by fragmented habitats. Because of fragmentation, edge effects and reduced habitat connectivity and quality affect insect species diversity, abundance, behavior, movement, life cycles, and interactions with plants, e.g., pollination, herbivory, and seed distribution. To a large degree, ecosystem services or processes are mediated by these interactions. While fragmented habitats create suitable conditions for invasive alien plants (IAPs), such invasions modify native plant composition and herbivorous insect communities because they cause a decline or loss in insect biodiversity. A systematic review was conducted by reviewing eighty-eight (88) articles to gather evidence for fragmentation effects on insect biodiversity, insects’ behavior and adaptations, plant-insect interactions (i.e., pollination, herbivory, and seed dispersal), and its influence on IAP invasions. This review deduced that any change in insect community composition and diversity due to fragmentation can have cascading effects on ecosystem processes within habitats. It further contends that successful conservation and management of fragmented habitats requires an understanding of the intricate dynamics of plant-insect interactions. However, the long-term resilience and health of ecosystems can be guaranteed by supporting sustainable land use, improving connectivity, and restoring habitats. These actions may help stop and/or reduce the effects of fragmentation on insect biodiversity and support the livelihoods and well-being of millions of people.

Aspirin inhibits atherosclerosis through macrophage pyroptosis by interacting with Lactobacillus johnsonii and its metabolite butyrate

Abstract Introduction Atherosclerotic cardiovascular disease (ASCVD) is a chronic progressive disease closely related to metabolism and inflammation. Aspirin inhibits cyclooxygenase (COX) and has antiplatelet aggregation effects, considered as the cornerstone of ASCVD treatment. Numerous studies have shown that gut microbiota (GM) and its metabolites affects host metabolism. Studies have also shown that people taking aspirin exhibit specific changes in the microbiota profile. However, whether the interaction of aspirin with GM and its metabolites affects the therapeutic efficacy of aspirin in treating atherosclerosis (AS) have not been reported. Purpose This study aimed to explore the interaction of aspirin with the GM and its metabolites in the treatment of AS, to reveal the specific mechanism of the GM-metabolite axis and provide potential new targets for the combined treatment of AS. Methods To establish the mouse model of atherosclerosis by high-fat diet, and the atherosclerotic plaque burden and composition were analyzed. The role of GM in aspirin anti-atherosclerosis was explored by antibiotics and fecal microbiota transplantation (FMT). The third generation 16S RNA sequencing was used to explore the effects of aspirin on species diversity and abundance of GM, and to screen differential microorganisms for intervention of AS mice. UHPLC-MS and GC-MS were used to explore the changes of intestinal metabolites induced by aspirin. The correlation between gut microbiota and metabolites was also investigated. Finally, in vitro and in vivo experiments were performed to confirm the effects and mechanisms of metabolites on macrophage pyroptosis and atherosclerosis. Results Aspirin has anti-atherosclerosis effect. After removing gut microbiota, the therapeutic effect of aspirin on atherosclerosis was decreased. Three generations of 16S rRNA gene sequencing results showed that aspirin supplementation alters the diversity of gut microbiota, and increased the relative abundance of Lactobacillus johnsonii(L.johnsonii) and Ligilactobacillus murinus(L.murinus). After gavage of L.johnsonii and L.murinus, the plaque burden and macrophage pyroptosis were significantly reduced in AS mice. Colonization with L.johnsonii and L.murinus significantly increased the abundance of probiotics and butyrate level in the feces of AS mice and L.johnsonii and L.murinus were positively correlated with butyrate. Supplementation of butyrate inhibited macrophage pyroptosis and atherosclerosis in vivo. In vitro, butyrate could inhibit the expression of NLRP3/Caspase-1/IL-1β and pyroptosome production, and this process mainly by activating butyrate receptors GPR41, GPR43 and GPR109A. Conclusions The gut microbiota may mediate the anti-AS effect of aspirin by promoting an increase in the abundance of L.johnsonii and L.murinus. Butyrate produced by Lactobacillus may mediate the anti-AS effect of aspirin, and inhibiting macrophage pyroptosis and the progression of AS.

Coal mining activities driving the changes in bacterial community

The mechanism of the difference in bacterial community composition caused by environmental factors in the underground coal mine is unclear. In order to reveal the influence of coal mining activities on the characteristics of bacterial community structure in coal seam, 16S rRNA gene amplicon sequencing technology was used to determine the species abundance, biodiversity, and gene abundance of bacterial community in a coal mine in Shanxi Province, and the environmental factors such as metal elements, non-metal elements, pH value, and gas concentration of coal samples were determined. The results showed that environmental factors and bacterial communities had obvious regional characteristics. Mining activities greatly affected the α diversity of bacterial communities, mining working face > main airway > roadway roof > unexposed coal seam > tunneling roadway. The bacterial community composition of each sample point is also very different. The main airway, roadway roof, and unexposed coal seam are dominated by Actinobacteria while the mining working face and tunneling roadway are dominated by Proteobacteria. Among the gene abundances of metabolic pathways in each site, Citrate cycle had the greatest difference, followed by glycine, serine and threonine metabolism, and oxidative phosphorylation and methane metabolism had little difference. RDA analysis showed that the environmental factors affecting the bacterial community were mainly cadmium, oxygen, hydrogen, and gas content. CCA analysis divided the bacterial community into three categories. Degradation functional bacteria are located in mining working face, bacteria that tolerate poor environments are located in main airway and tunneling roadway, and human pathogens are mostly located in roadway roof and unexposed coal seam. The research results would provide support for realizing green and safe mining in coal mines.

Urogenital colonization and pathogenicity of E. Coli in the vaginal microbiota during pregnancy

This study explores the role of the vaginal microbiota (VM) in the pathophysiology of asymptomatic bacteriuria (ASB) in a cohort of 1,553 pregnant women. Worldwide, E. coli remains the most common etiological agent of bacteriuria during pregnancy and also a major causative agent of newborn infections. A healthy VM is typically characterized by low diversity and is dominated by lactic acid-producing species, notably those from the Lactobacillus genus. Our results point to decreases in Lactobacillus spp associated with an increase of gut-microbiota-associated species from the Enterobacterales order. Escherichia coli exhibited the most pronounced increase in abundance within the VM during bacteriuria and was notably associated with ASB. Molecular typing and antimicrobial resistance characterization of 72 metagenome assembled E. coli genomes (MAGs) from these pregnant women revealed a genomic signature of extraintestinal pathogenic E. coli (“ExPEC”) strains, which are involved in various extraintestinal infections such as urinary tract infections, newborn infections and bacteremia. Microbial diversity within the vaginal samples from which an E. coli MAG was obtained showed a substantial variation, primarily marked by a decrease in abundance of Lactobacillus species. Overall, our study shows how disruption in key bacterial group within the VM can disrupt its stability, potentially leading to the colonization by opportunistic pathogens.

WATER INHABITING BIRDS OF MAIGANGA POST COAL MINING PONDS AND ARTIFICIAL WETLAND

Wetlands play a significant role in bird conservation and generally support biological diversity. Historically, bird community assessment has been employed in monitoring and identifying areas for conservation actions. In this study, we examined two post mining ponds and one artificial wetland in Maiganga Coal Mine, Gombe State for wetland avifauna. We focused on water birds (i.e. bird species that depend wholly or partially on water and wetland ecosystems for their survival). Survey was conducted during the onset of dry season in October 2021 to September 2022. Point count technique was used for the survey. A total of 626 individuals of 23 species from 19 genera, 10 families and 6 bird Order were recorded. The White-faced whistling duck was the most abundant bird species and was restricted to the active-mine pond (AMP). AMP was the most diverse of the three water bodies surveyed. However, some species were exclusive to either of the three sites. Similarly, AMP was the most abundant site with 426 individuals from 16 bird species, followed closely by the sedimentation pond with 147 individuals drawn from 15 bird species. The results suggest that water depth, age of establishment and surrounding vegetation structure could be a major determinant of bird species composition and abundance in the study area. The study highlights the importance of restorative actions aimed at recovering modified landscapes, through tree planting and creation of wetlands. This is evident in the presence of waterbirds in Maiganga, a location that was previously devoid of perennial water bodies and...

Does gut microbiota dysbiosis impact the metabolic alterations of hydrogen sulfide and lanthionine in patients with chronic kidney disease?

BackgroundChronic Kidney Disease (CKD) is characterized by a methionine-related metabolic disorder involving reduced plasma levels of hydrogen sulfide (H2S) and increased lanthionine. The gut microbiota influences methionine metabolism, potentially impacting sulfur metabolite dysfunctions in CKD. We evaluated whether gut microbiota dysbiosis contributes to H2S and lanthionine metabolic alterations in CKD.MethodsThe gut microbiota of 88 CKD patients (non-dialysis, hemodialysis, and transplant patients) and 26 healthy controls were profiled using 16 S-amplicon sequencing. H2S and lanthionine concentrations were measured in serum and fecal samples using the methylene blue method and LC-MS/MS, respectively.ResultsThe CKD population exhibited a tenfold increase in serum lanthionine associated with kidney dysfunction. Despite lanthionine retention, hemodialysis and transplant patients had significantly lower serum H2S than healthy controls. Fecal H2S levels were not altered or related to bloodstream H2S concentrations. Conversely, fecal lanthionine was significantly increased in CKD compared to healthy controls and associated with kidney dysfunction. Microbiota composition varied among CKD groups and healthy controls, with the greatest dissimilarity observed between hemodialysis and transplant patients. Changes relative to the healthy group included uneven Ruminococcus gnavus distribution (higher in transplant patients and lower in non-dialysis CKD patients), reduced abundance of the short-chain fatty acid-producing bacteria Alistipes indistinctus and Coprococcus eutactus among transplant patients, and depleted Streptococcus salivarius in non-dialysis CKD patients. A higher abundance of Methanobrevibacter smithii, Christensenella minuta, and Negativibacillus massiliensis differentiated hemodialysis patients from controls. No correlation was found between differentially abundant species and the metabolic profile that could account for the H2S and lanthionine alterations observed.ConclusionsThe metabolic deregulation of H2S and lanthionine observed in the study was not associated with alterations in the gut microbiota composition in CKD patients. Further research on microbial sulfur pathways may provide a better understanding of the role of gut microbiota in maintaining H2S and lanthionine homeostasis.

Distributional Properties of Generalized Diversity Index Based on two-key Species Abundance Models

In the area of ecological research, the study of species diversity of a community or population seems to have been fully developed. However, the problem of how the distributions and expectations of the sample diversity indices are affected by population diversity has received little attention. This paper is concerned with methods of moments of improved generalized diversity index, N(α,β) due to Shamia's (2013) proposal which includes special cases. This improved index is a further generalization due to Good as described by Backowski et al., (1997). In this article, the first four central moments of N(α,β) are derived for both general species relative abundance models: the Broken-Stick model and Sequential-Breakage model within a range of (α,β) considered. This allows the determination of the skewness and kurtosis of N(α,β) and thus gives information about the behaviour of the distribution of the improved index. The results are applied for comparing the diversities of the communities based on the samples n>s, and they yielded certain desirable monotonicity properties for large samples. It can be also shown that such indices are asymptotically normally distributed.

Modeling long carbon-chain species formation with porous multiphase models

Context. Recent studies show that multiphase models trap too many volatile species such as CH4 inside ice mantles, so they usually underestimate the abundances of long carbon-chain species observed toward warm carbon-chain chemistry (WCCC) sources. Aims. We propose a new multiphase model that allows more volatile species to diffuse out of the ice mantle upon warming. The new multiphase model is used to study the synthesis of long carbon-chain molecules in WCCC sources. Methods. We included porous structure in the ice mantles. The porous structure can enlarge the active layers of ice mantles so that fewer volatile species are trapped. The porous multiphase models were simulated using an accelerated Gillespie algorithm. Results. The abundances of long carbon-chain species predicted by the porous multiphase models can be more than one order of magnitude higher than those predicted by the multiphase model at temperatures relevant to WCCC sources. Moreover, the porous multiphase models predict more abundant long carbon-chain species as the porosity of the ice mantles increases. On the other hand, the two-phase model still estimates higher long carbon-chain species abundances than the porous multiphase models do. The abundances of long carbon-chain species predicted by our porous multiphase models agree reasonably well with observations toward three WCCC sources, L483, L1527, and B228. Conclusions. Our porous multiphase model solves the problem of too many volatile species being trapped in ice mantles in the multiphase models.

Metagenome-based characterization of the gut bacteriome, mycobiome, and virome in patients with chronic hepatitis B-related liver fibrosis.

The gut microbiota is believed to be directly involved in the etiology and development of chronic liver diseases. However, the holistic characterization of the gut bacteriome, mycobiome, and virome in patients with chronic hepatitis B-related liver fibrosis (CHB-LF) remains unclear. In this study, we analyzed the multi-kingdom gut microbiome (i.e., bacteriome, mycobiome, and virome) of 25 CHB-LF patients and 28 healthy individuals through whole-metagenome shotgun sequencing of their stool samples. We found that the gut bacteriome, mycobiome, and virome of CHB-LF patients were fundamentally altered, characterized by a panel of 110 differentially abundant bacterial species, 16 differential fungal species, and 90 differential viruses. The representative CHB-LF-enriched bacteria included members of Blautia_A (e.g., B. wexlerae, B. massiliensis, and B. obeum), Dorea (e.g., D. longicatena and D. formicigenerans), Streptococcus, Erysipelatoclostridium, while some species of Bacteroides (e.g., B. finegoldii and B. thetaiotaomicron), Faecalibacterium (mainly F. prausnitzii), and Bacteroides_A (e.g., B. plebeius_A and B. coprophilus) were depleted in patients. Fungi such as Malassezia spp. (e.g., M. japonica and M. sympodialis), Candida spp. (e.g., C. parapsilosis), and Mucor circinelloides were more abundant in CHB-LF patients, while Mucor irregularis, Phialophora verrucosa, Hortaea werneckii, and Aspergillus fumigatus were decreases. The CHB-LF-enriched viruses contained 18 Siphoviridae, 12 Myoviridae, and 1 Podoviridae viruses, while the control-enriched viruses included 16 Siphoviridae, 9 Myoviridae, 2 Quimbyviridae, and 1 Podoviridae_crAss-like members. Moreover, we revealed that the CHB-LF-associated gut multi-kingdom signatures were tightly interconnected, suggesting that they may act together on the disease. Finally, we showed that the microbial signatures were effective in discriminating the patients from healthy controls, suggesting the potential of gut microbiota in the prediction of CHB-LF and related diseases. In conclusion, our findings delineated the fecal bacteriome, mycobiome, and virome landscapes of the CHB-LF microbiota and provided biomarkers that will aid in future mechanistic and clinical intervention studies.

Biodiversity measures of a grassland plant-pollinator community are resilient to the introduction of honey bees (Apis mellifera).

The prairies of Canada support a diversity of insect pollinators that contribute pollination services to flowering crops and wild plants. Habitat loss and use of managed pollinators has increased conservation concerns for wild pollinators, as mounting evidence suggests that honey bees (Apis mellifera) may reduce their diversity and abundance. Plant-pollinator community analyses often omit non-bee pollinators, which can be valuable contributors to pollination services. Here, we experimentally introduced honey bees to examine how their abundance affects the species richness, diversity, abundance, species composition, interaction richness, and interaction diversity of all wild pollinators, and of four higher taxa separately. We identified all insect pollinators and analyzed how honey bee abundance affected the above biodiversity metrics, controlling for flower abundance and flower species richness. Even with high honey bee densities, there was no change to any of these variables, except that beetle species diversity increased. All other taxa had no significant relationship to honey bee abundance. Considering the widespread use of managed honey bees, the effect they have on wild pollinators should be firmly established. Our results suggest that honey bees have little to no short-term impact on the wild pollinator community or its interactions with plants in this native grassland.

Warm-adapted encroachment outpaces cool-adapted retreat in a hotspot of trailing-edge population diversity in the southern Appalachian Mountains, USA

Abstract Many populations near receding low-latitude range: margins are declining in response to climate change, but most studies of trailing-edge populations have focused on single species. Using 10 years (2014–2023) of avian survey data from a high-elevation trailing-edge population hotspot in the Appalachian Mountains, USA, we tested the hypothesis that high-elevation communities would experience turnover through thermophilisation, as warm-adapted species near the center of their geographic ranges expand into regions formerly dominated by peripheral populations of cool-adapted species. Three of the 9 cool-adapted, peripheral populations decreased in abundance whereas 6 species exhibited little change. For warm-adapted populations near the core of their range, 1 of 16 decreased in abundance, 11 increased, and 4 exhibited no change. Within the most abundant species in this community, our results indicate that warm-adapted species are expanding their ranges faster than the rate at which ranges of cool-adapted species are contracting. Avoiding future community turnover may require conservation strategies that maintain microclimates for cool-adapted species facing novel abiotic and biotic conditions at high elevations.

Assessing native parasitoids of the invasive pest Drosophila suzukii (Diptera: Drosophilidae) in the Southeastern USA.

Drosophila suzukii (Matsumura) (Diptera: Drosophilidae), commonly known as spotted-wing Drosophila (SWD), is an invasive insect pest threatening the economy of many small fruit farms in the Americas and Europe. Biological control using parasitoids is a promising strategy for improving the sustainable management of SWD. To use the parasitoids as biocontrol agents, recognizing and understanding the presence and preference of North American native parasitoids and their local adaptation is necessary. We conducted 2 season-long field explorations of North American native parasitoids of SWD during 2021 and 2022 at major blueberry-producing locations in southeast GA, USA. A total of 371 parasitoids of Drosophila were collected using fruit-baited sentinel traps and classified into 3 families: Figitidae, Pteromalidae, and Diapriidae. Leptopilina boulardi (Hymenoptera: Figitidae) and Pachycrepoideus vindemmiae (Hymenoptera: Pteromalidae) were the most abundant species. The abundance of parasitoids was higher during the peak blueberry ripening period through the end of the harvest season compared to all other phenological stages. Out of the North American native parasitoids of SWD that we collected, Pachycrepoideus vindemmiae successfully parasitized SWD in its natural habitat, and L. boulardi only parasitized SWD larvae at a low rate of 7% in the laboratory, but it failed to emerge from all the parasitized SWD. Ultimately, we found that the existing North American native parasitoids were inadequate to suppress the SWD in these locations. Planned intervention with the classical release of Asian native specialist parasitoids in addition to the existing SWD management approaches was deemed necessary in these areas.

Exploring novel North Water Polynya ecosystems under climate change

Climate change is rapidly reshaping species distributions in the Arctic, which could profoundly impact ecosystem structure and function. While considerable effort has focused on projecting future species distributions, assessing the impacts of range-shifting species on recipient communities and subsequent disruptions to food webs remains largely unstudied. Here, we address this gap by combining species distribution models and ecosystem models to explore the emergence of novel ecosystems in the North Water Polynya. The North Water Polynya is an open-water area between Greenland and Canada, surrounded by sea ice and one of the world’s most productive ocean ecosystems. Using existing literature and projections from species distribution models of four marine species, we develop six plausible future ecosystem scenarios for the North Water Polynya. These scenarios include changing biomass of primary producers, changing biomass and size structure of copepods, shifting abundances of forage fish species, and the establishment of killer whales. We find that the biomass of higher trophic levels show pronounced decreases in response to the decrease in pelagic primary producers, with polar bear biomass halving compared to present conditions. Changes in the copepod size structure has the largest impact on the entire ecosystem compared to the other novel ecosystem scenarios, suggesting a strong reliance of higher trophic levels on large, lipid-rich copepods. We further show that increasing capelin with a simultaneous decrease in Arctic cod biomass causes large decreases in the biomass of marine mammals such as polar bear, beluga and ringed seal. Finally, we show the establishment of killer whales as a key novel predator could have cascading top-down effects on the North Water Polynya ecosystem. The framework presented here provides an approach for exploring the emergence of novel ecosystems and highlights how climate change could disrupt a high Arctic ecosystem.