Spatial Population Structure Research Articles

Analysis of socio-economic spatial structure of urban agglomeration in China based on spatial gradient and clustering

Research background: Previous studies on the economic and social development of urban agglomerations mostly focus on a single primacy comparative analysis and efficiency evaluation. Spatial structure differentiation is an important feature of urban agglomeration. The lack of economic and social analysis on the spatial structure makes it impossible to determine the development positioning of each city in the urban agglomeration, which affects the sustainable economic devel-opment ability of these areas.
 Purpose of the article: The objective of the article is to analyze the spatial development law and experience of urban agglomeration, this study explores the practice of economic and population spatial structure of city areas in China. For this purpose, CPUA and its central city Zhengzhou was taken as an example, the spatial gradient structure of example was analyzed.
 Methods: Using economic and population data of 32 cities in this region, growth pole theory, and pole-axis theory, the economic and population spatial structure of urban agglomeration, the spatial gradient structure of central cities in urban agglomerations were analyzed with the method of cluster about radiation index.
 Findings & value added: (1) In the process of the formation of CPUA, the geo-graphical spatial pattern plays a decisive role in economic and social development. This is an experience from developing countries. (2) CPUA presents a gradient development pattern with Zhengzhou as the center, and economic and social development gradually radiates to the metropolitan area, the core development area, and the character development demonstration area. (3) The economic and social gradients of Zhengzhou, the central city, present the hierarchy rules and characteristics which are driven by the Beijing-Guangzhou-Railway axis and the Longhai-Railway axis. (4) The central city of Zhengzhou still presents insufficient primacy in regional development, which shows that Zhengzhou accounts for 6% of the population of the Central Plains Economic Zone and 14% of GDP, and insufficient agglomeration. Different countries at different stages of economic development have different urban agglomeration development models. The conclusions from China provide new decision-making ideas and methods for spatial structure research and development strategy analysis of urban agglomerations.

Barrier to Gene Flow of Grey Mangrove Avicennia marina Populations in the Malay Peninsula as Revealed From Nuclear Microsatellites and Chloroplast Haplotypes

Contemporary mangrove forest areas took shape historically and their genetic connectivity depends on sea-faring propagules, subsequent settlement, and persistence in suitable environments. Mangrove species world-wide may experience genetic breaks caused by major land barriers or opposing ocean currents influencing their population genetic structure. For Malay Peninsula, several aquatic species showed strong genetic differentiation between East and West coast regions due to the Sunda shelf flooding since the Last Glacial Maximum. In this study genetic diversity and structure of Avicennia marina populations in Malay Peninsula were assessed using nuclear microsatellite markers and chloroplast sequences. Even though all populations showed identical morphological features of A. marina, three evolutionary significant units were obtained with nuclear and cytoplasmic markers. Avicennia marina along a 586 km stretch of the West coast differed strongly from populations along an 80 km stretch of the East coast featuring chloroplast capture of Avicennia alba in an introgressive A. marina. Over and above this expected East-West division, an intra-regional subdivision was detected among A. marina populations in the narrowest region of the Strait of Malacca. The latter genetic break was supported by an amova, structure, and barrier analysis whereas RST > FST indicated an evolutionary signal of long-lasting divergence. Two different haplotypes along the Western coast showed phylogeographic relationship with either a northern or a putative southern lineage, thereby assuming two Avicennia sources facing each other during Holocene occupation with prolonged separation in the Strait of Malacca. Migrate-n model testing supported a northward unidirectional stepping-stone migration route, although with an unclear directionality at the genetic break position, most likely due to weak oceanic currents. Low levels of genetic diversity and southward connectivity was detected for East coast Avicennia populations. We compared the fine-scale spatial genetic structure (FSGS) of Avicennia populations along the exposed coast in the East vs. the sheltered coast in the West. A majority of transects from both coastlines revealed no within-site kinship-based FSGS, although the remoteness of the open sea is important for Avicennia patches to maintain a neighborhood. The results provide new insights for mangrove researchers and managers for future in-depth ecological-genetic-based species conservation efforts in Malay Peninsula.

Spatial population structure: patterns of adaptation in populations of the water hyacinth grasshopper Cornops aquaticum (Bruner 1906)

AbstractThe water hyacinth grasshopper Cornops aquaticum (Bruner 1906) constitutes an appropriate model to assess phenotypic and karyotypic variability in the context of differentiation and adaptation of insect populations because it occurs over a wide latitudinal range. This study represents a general analysis of phenotype, karyotype and molecular variation in native populations of C. aquaticum in South America. This is also relevant because this insect is considered a promising biological control agent of water hyacinth, a native South American aquatic plant but a pest in South Africa. Along Paraná and Uruguay River Basins, body size correlated negatively with latitude, and positively so with temperature and rainfall in both sexes. To test whether the chromosomal and phenotypic patterns were adaptive, we compared them with neutral microsatellite loci variation in populations from the medium and lower course of the Paraná River. Firstly, the lack of pairwise association between karyotype and phenotype distance matrixes with that of neutral loci suggested non-neutrality. Secondly, phenotypic differentiation for all morphometric traits (PST) was significantly larger than molecular differentiation (FST), indicating a prevailing divergence selection effect on the observed phenotypic patterns. Finally, the phenotypic and genotypic spatial structures – inferred from Bayesian approaches – were discordant: neutral genetic structure clustered together most populations except for the two southernmost, downstream ones, whereas phenotypic spatial structure groups together all the deltaic populations and singles out the two northernmost ones. The results suggest directional selection leading to higher centric fusion frequencies in the downstream populations and favouring morphometric optimal differences in relation to the environment.

Metapopulation structure modulates sexual antagonism.

Despite the far‐reaching evolutionary implications of sexual conflict, the effects of metapopulation structure, when populations are subdivided into several demes connected to some degree by migration, on sexual conflict dynamics are unknown. Here, we used experimental evolution in an insect model system, the seed beetle Callosobruchus maculatus, to assess the independent and interacting effects of selection histories associated with mating system (monogamy vs. polygamy) and population subdivision on sexual conflict evolution. We confirm traditional predictions from sexual conflict theory by revealing increased resistance to male harm in females from populations with a history of intense sexual selection (polygamous populations) compared to females from populations with a history of relaxed sexual selection (monogamous populations). However, selection arising from metapopulation structure reversed the classic pattern of sexually antagonistic coevolution and led to reduced resistance in females from polygamous populations. These results underscore that population spatial structure moderates sexual selection and sexual conflict, and more broadly, that the evolution of sexual conflict is contingent on ecological context. The findings also have implications for population dynamics, conservation biology, and biological control.

Fast and flexible estimation of effective migration surfaces.

Spatial population genetic data often exhibits 'isolation-by-distance,' where genetic similarity tends to decrease as individuals become more geographically distant. The rate at which genetic similarity decays with distance is often spatially heterogeneous due to variable population processes like genetic drift, gene flow, and natural selection. Petkova et al., 2016 developed a statistical method called Estimating Effective Migration Surfaces (EEMS) for visualizing spatially heterogeneous isolation-by-distance on a geographic map. While EEMS is a powerful tool for depicting spatial population structure, it can suffer from slow runtimes. Here, we develop a related method called Fast Estimation of Effective Migration Surfaces (FEEMS). FEEMS uses a Gaussian Markov Random Field model in a penalized likelihood framework that allows for efficient optimization and output of effective migration surfaces. Further, the efficient optimization facilitates the inference of migration parameters per edge in the graph, rather than per node (as in EEMS). With simulations, we show conditions under which FEEMS can accurately recover effective migration surfaces with complex gene-flow histories, including those with anisotropy. We apply FEEMS to population genetic data from North American gray wolves and show it performs favorably in comparison to EEMS, with solutions obtained orders of magnitude faster. Overall, FEEMS expands the ability of users to quickly visualize and interpret spatial structure in their data.

Population structure, seasonal genotypic differentiation, and clonal diversity of weedy dandelions in three Boston area populations (Taraxacum sp.).

Weedy dandelions have a worldwide distribution and thrive in urban environments despite a lack of sexual reproduction throughout most of its range. North American dandelions, introduced from Eurasia, are believed to be primarily, if not exclusively, apomictic triploids. In some European populations, apomicts co‐occur with diploid sexual individuals and hybridizations can create genetically unique apomicts, which may subsequently disperse and establish new populations globally. Using six nuclear microsatellite markers and a cpDNA intergenic spacer, we investigate the impact of this unusual natural history on population structure and diversity in three urban Boston area dandelion populations. Our results show high levels of genetic diversity within populations, spatial population structure, and seasonal genotypic differentiation in flowering times. We find evidence that sexual reproduction and recombination, presumably in Europe, and extensive gene flow drive these patterns of diversity and create the appearance of panmixia despite the lack of evidence for local sexual reproduction.

Spatial and temporal variation in the genetic structure of Dascyllus trimaculatus (Pomacentridae) in the Bohol Sea

The potential of microsatellite markers to detect the spatial and temporal genetic structure of reef fish populations within a linear distance of 300 km in the absence of geographic barriers was tested in the Bohol Sea, central Philippines, using the three-spot damselfish Dascyllus trimaculatus. A total of 672 samples from 7 populations in the Bohol Sea were processed to determine temporal and spatial patterns of genetic variability using ten previously developed and tested microsatellite markers. The extent of differentiation was determined based on a variance-based measure of population structure FST and RST, and genetic distances Ds , DA, and dm2, each of which makes different assumptions on the process of migration, mutation, selection, and genetic drift. Patterns of temporal and spatial variation were consistent among 36 possible pairs of populations. Reef groups are defined as (1) the Mantigue-Dinagat on the northeast edge of the Bohol Sea; (2) the Selinog and Dapitan islands, to the southwest and central Bohol sea populations (3) Apo and (4) Sumilon to the west, and (5) Balicasag group to the northwest. The presence of structure in the absence of geographic barriers suggests the influence of strong surface circulation patterns that differ from the east to the west side of the region. The consistency of a population’s genetic signatures over multiple temporal sampling dates implies strong habitat selection for genotypes. Genetic breaks were detected at a distance 4x greater than the marine protected area’s average size, suggesting a minimum linear distance for networking of MPAs should be expanded to this scale. KEYWORDS: Conservation, Hardy-Weinberg equilibrium, marine protected area, microsatellite markers, population genetics, reef fish

Avicennia Genetic Diversity and Fine-Scaled Structure Influenced by Coastal Proximity of Mangrove Fragments

Avicennia dominated mangrove forests occur from seaward to landward sites and hence are subject to different dynamics within estuarine ecosystems. Regeneration of mangrove forests primarily depends on the extent of propagule spread and subsequent establishment in suitable habitats. The complex nature of estuarine systems induces a wide variety of local conditions for within-site propagule retention and settlement thereby allowing spontaneous regeneration of mangroves. In this study, we estimated the fine-scale spatial genetic structure (FSGS) of Avicennia populations and examined whether their position relative to the seaside or the size of mangrove patches could have influenced the extant local population genetic structure. A kinship-based FSGS was performed using microsatellite markers in 523 A. marina, 189 A. rumphiana and 60 A. alba adult trees of 24 sites in The Philippines. Transects within each estuary were taken both parallel and perpendicular to the coastline or tidal river edge. The extent of local mangrove areas and various human-induced encroachments as such did not show any trend in allele diversity, heterozygosity values or inbreeding levels. However, farther inland situated mangrove patches showed a larger FSGS extent across the neighborhood (up to 75 m) though less diversity along with inbreeding, most likely due to retention of related propagules and lowered chance of external propagule input. Estimation of connectivity along a same coastline stretch supported a unidirectional steppingstone or adjacent migration model for populations of either A. marina, A. alba or A. rumphiana. These were congruent with ocean currents across mangrove estuaries of the Tablas Strait and along Western Leyte, thereby emphasizing the relevance of coastal connectivity for long term persistence. From this study, we conclude that both proximity to open water and narrowness of mangrove patches may affect their captured diversity, inbreeding and fine-scale structure caused by propagule movement within or beyond a local mangrove fragment during recent generations. Higher levels of allele diversity for seaward sites and highest likelihood of migration for adjacent mangroves both add to the importance of coastal connectivity that is the only natural cohesive force on longer term and necessary to counteract short term effects of increasingly encroached mangrove environments.

Spatial Genetic Structure of the Sika Deer (Cervus nippon) Population on Yakushima: Significant Genetic Differentiation on a Small Island

The sika deer population on Yakushima Island exhibits high genetic diversity despite the small size of the island. We hypothesized that the high genetic diversity of the population had been maintained by the population structure, which included several subpopulations among which gene flow was limited. To test this hypothesis, we analyzed the spatial genetic structure of the population using 12 microsatellite loci. Two and four subpopulations were detected by STRUCTURE (stN and stS) and GENELAND (glN, glE, glS, and glW) software, respectively. The basic genetic structure assigned by STRUCTURE was supported by GENELAND, while stN and stS were further separated into two subpopulations (glN and glE; glS and glW, respectively) by GENELAND. All pairwise genetic differentiations between the two and four subpopulations were significant. These results demonstrated that the Yakushima population was structured into genetically distinct subpopulations. Although the location of the western boundary between stN and stS corresponded with a large river, no landscape or biological feature could be identified for the eastern boundary. We discussed the relationships between the genetic structure and management units designed by the local government and concluded that the Yakushima population should be managed based on their spatial population structures considering multiple time scales.

Spatial Distribution, Population Structure, and Predatory Impact of Gelatinous Predators on Zooplankton Community in Inshore Waters off Crimean Coast of the Black Sea

The study reports the data on the distribution and predatory impact of the gelatinous macroplankton on mesozooplankton in the inshore waters of Crimea in April 2016. In the study areas, gelatinous macroplankton comprised Scyphomedusae Aurelia aurita (Linnaeus, 1758) and three ctenophore species (Mnemiopsis leidyi A. Agassiz, 1865, Beroe ovata Bruguire, 1789, and Pleurobrachia pileus (O. F. Müller, 1776). The biomass of A. aurita dominated everywhere and varied from ~ 62 to 330 g·m‑2 in different areas. The largest A. aurita biomass was observed in the South Coast of Crimea and the smallest in Karkinitsky Bay, where the number of jellyfish was high, suggesting the predominance of small individuals in the population. The size structure of A. aurita population differed by region: the proportion of large animals increased from the West to the East. The abundance and biomass of M. leidyi were rather low: 0.33–1.45 ind·m‑2 and 1–51.7 g·m‑2, respectively (the exception was the position in the Kerch Strait, where M. leidyi abundance reached 2 ind. m‑2 and biomass 126.3 g·m‑2); that species occurred only at 33–45 % of the stations (the exception was Karkinitsky Bay – 17 %), with the maximum values in the South Coast of Crimea. Large, 55–70-mm, adult individuals predominated. P. pileus biomass was lower than the biomass of A. aurita and M. leidyi in all areas, but its abundance was much higher. The daily rations of A. aurita varied widely both in the entire area and from one region to another. The daily ration values correlated with the carbon content in A. aurita body. The predation pressure of A. aurita on zooplankton in the inshore waters of Crimea was very low and did not result in a crucial decrease in mesozooplankton abundance. The effect of M. leidyi, even with its low abundance and biomass, was much stronger

Spatial and Temporal Genetic Diversity and Population Structure of Hemileia vastatrix from Peruvian Coffee Plantations.

Population genetic studies of Hemileia vastatrix have been conducted in order to describe the evolutionary dynamics of the pathogen and the disease epidemiology as consequence of changes in disease management and host distribution occurred in Peru after the 2013 epidemic. These analyses were performed by sequencing the internal transcribed spacers of the nuclear ribosomal DNA (rDNA-ITS) of H. vastatrix collected from two coffee growing areas in 2014 and 2018. H. vastatrix population showed high haplotype diversity (Hd = 0.9373 ± 0.0115) with a low nucleotide diversity (π = 0.00322 ± 0.00018). Likewise, AMOVA indicated that fungus population has behaved as a large population without structuring by geographical origin and sampling years (FST = 0.00180, P = 0.20053 and FST = 0.00241, P = 0.19693, respectively). Additionally, the haplotype network based on intraspecific phylogenetic analysis of H. vastatrix using Peruvian and NCBI sequences revealed that Peruvian ancestral haplotypes, which were maintained in time and space, would correspond to the reported sequences of the races II and XXII. This result suggests that no substantial changes have occurred through time in Peruvian Hemileia vastatrix population.

Revival and recent advancements in the spatial fishery models originally conceived by Sidney Holt and Ray Beverton

Abstract Sidney Holt and Ray Beverton are primarily recognized for developing the basis of demographic stock assessment modelling, but their enduring legacy continues to influence and guide advancements in many fields of fisheries science. Although largely forgotten, their contributions to spatial modelling laid the foundation for a variety of applications in aquatic and terrestrial populations. Spatial modelling approaches are rapidly evolving beyond even the visionary scope of Beverton and Holt due to advancements in understanding of spatial population structure, collection of spatially explicit data, and statistical parameter estimation. A review of Beverton and Holt’s original movement models demonstrates that understanding the origins and basic underlying assumptions can help ensure that current models are consistent with fundamental principles. Additionally, recent simulation studies show that conforming to or revising spatial model assumptions is essential for accurate estimation. As fisheries science transitions to more complex spatial stock assessment models, understanding their conceptual development and the lessons learned by our predecessors is essential for proper model specification and application.

Stable Isotope Analysis of Specimens of Opportunity Reveals Ocean-Scale Site Fidelity in an Elusive Whale Species

Elusive wildlife are challenging to study, manage, or conserve, as the difficulty of obtaining specimens or conducting direct observations leads to major data deficiencies. Specimens of opportunity, such as salvaged carcasses or museum specimens, are a valuable source of fundamental biological and ecological information on data-deficient, elusive species, increasing knowledge of biodiversity, habitat and range, and population structure. Stable isotope analysis is a powerful indirect tool that can be used to infer foraging behavior and habitat use retrospectively from archived specimens. Beaked whales are a speciose group of cetaceans that are challenging to studyin situ, and although Sowerby's beaked whale (Mesoplodon bidens) was discovered >200 years ago, little is known about its biology. We measured δ13C and δ15N stable isotope composition in bone, muscle, and skin tissue from 102 Sowerby's beaked whale specimens of opportunity collected throughout the North Atlantic Ocean to infer movement ecology and spatial population structure. Median δ13C and δ15N values in Sowerby's beaked whale bone, muscle, and skin tissues significantly differed between whales sampled from the east and west North Atlantic Ocean. Quadratic discriminant analysis that simultaneously considered δ13C and δ15N values correctly assigned >85% of the specimens to their collection region for all tissue types. These findings demonstrate Sowerby's beaked whale exhibits both short- and long-term site fidelity to the region from which the specimens were collected, suggest that this species is composed of two or more populations or exhibits a metapopulation structure, and have implications for conservation and management policy. Stable isotope analysis of specimens of opportunity proved a highly successful means of generating new spatial ecology data for this elusive species and is a method that can be effectively applied to other elusive species.

Spatial population structure of long tail hake from Southwest Atlantic and Southeast Pacific waters in young and adult stages

The long tail hake Macruronus magellanicus is one of the most important fishery resources south of 45°S, whose stock structure in the Atlantic and Pacific oceans remains unclear. The aim of this study was to analyze the spatial segregation in juvenile and adult stages by using otolith multi-elemental chemical signatures in both Atlantic and Pacific oceans in order to improve the sustainable fishery management. Fish were collected in four different locations in the Southwestern Atlantic Ocean (South; SA, North; NA, Central; CA, and insular; IA) and one from the Southeastern Pacific Ocean (PO). The multi-elemental signature of the otolith edge and core, determined by Laser Ablation Inductively Coupled Plasma Mass Spectrometry, was used to evaluate spatial segregation in the juvenile and adult stages, respectively. PERMANOVA (p < 0.05), Hotelling's T-squared (p < 0.05) and discriminant (LDA) analyzes based on the otolith edge chemistry showed high segregation of the data, suggesting the potential presence of different stocks, especially discriminating between NA and IA, and PO and SA. Multivariate analyzes, based on the otolith core chemistry, including cluster and non-metric multidimensional scaling analyzes, revealed a complex structuring of the data, suggesting a potential segregation in early stages between the Atlantic and the Pacific. In addition, results also suggested a moderate overlap between some sites from the southern Atlantic such as IA and CA. This study indicates that the population structure of long tail hake is not resolved, highlighting the need to explore it in depth to contribute to its management.

Genomic signatures of demographic declines in an imperiled amphibian inform conservation action

AbstractCatastrophic population declines due to disease often lead to fragmented remnant populations and loss of gene flow. Managers are left to determine appropriate conservation actions to recover and maintain population persistence. The recent utilization of genomic data to assist in species recovery now allows us to combine genome‐wide surveys of differentiation and diversity with the identification of potentially adaptive regions to develop conservation plans that incorporate ecological and evolutionary processes. The unprecedented global decline of amphibian populations due to the pathogen Batrachochytrium dendrobatidis has increased the need to apply genomic tools to amphibian conservation practices. We show here how understanding genetic characteristics of remnant frog populations affected by disease can be applied directly to restoration efforts. Cascades frogs (Rana cascadae) occur in the mountainous regions of the Pacific northwestern United States and have declined dramatically at the southern edge of their range in California. We conducted genome‐wide surveys within this region to inform conservation and reintroduction efforts. We found strong north‐south genetic differentiation between Oregon and California and novel spatial structure within California. Genetic diversity was lower in California than Oregon and genetic drift was the most important driver of genetic diversity and population structure in California, making conservation efforts aimed at boosting overall genetic diversity most urgent. Spatial genetic structure of populations within California suggests that reintroductions to Lassen Volcanic National Park, where they were recently extirpated, should use remaining source populations south of the park. Our findings support the treatment of California's R. cascadae populations separately from the rest of their range and highlight the importance of conservation genomics in applied species conservation.

Ecology of Patas Monkey (Erythrocebus Patas) in Buffer Zone Ranges, Old Oyo National Park, Nigeria

The buffer zones of Nigerian protected areas are poorly managed. Patas monkey (Erythrocebus patas) was studied in fact owing to its dearth of information on its ecology and existence in South-West Nigeria National Park. Therefore, it was necessary to examine E. patas spatial distribution and population structure in the Old Oyo National Park buffer zone ranges, situated in South-West Nigeria and as well know its dietary uptake alongside delineating its various activities. Observations were positioned on direct census methods. A total of 60 individuals of E. patas (23 female, 21 male, and 16 young individuals) were sighted within the study period (March to July). The results showed that the highest number of sighted E. patas (18 individuals) was recorded in the month of March while the Marguba range had the highest percentage of sighted E. patas (31.7%). Thirteen plant species were identified as food matters of E. patas while the major activity observed by the majority of E. patas was found feeding on the identified food matters. The food matters consumed were plant parts which included the leaves, flowers, gum, enflamed spikes, and fruits. Actions to uphold and guard the remaining populace of E. patas in the Park and buffer zones should be adequately fortified.

Low effective population size and high spatial genetic structure of black poplar populations from the Oder valley in Poland

ContextBlack poplar (Populus nigra L.) is a keystone species of European riparian ecosystems that has been negatively impacted by riverside urbanization for centuries. Consequently, it has become an endangered tree species in many European countries. The establishment of a suitable rescue plan of the remaining black poplar forest stands requires a preliminary knowledge about the distribution of genetic variation among species populations. However, for some parts of the P. nigra distribution in Europe, the genetic resources and demographic history remain poorly recognized.AimsHere, we present the first study on identifying and characterizing the genetic resources of black poplar from the Oder valley in Poland. This study (1) assessed the genetic variability and effective population size of populations and (2) examined whether gene flow is limited by distance or there is a single migrant pool along the studied river system.MethodsA total of 582 poplar trees derived from nine black poplar populations were investigated with nuclear microsatellite markers.Results(1) The allelic richness and heterozygosity level were high and comparable between populations. (2) The genetic structure of the studied poplar stands was not homogenous. (3) The signatures of past bottlenecks were detected.ConclusionOur study (1) provides evidence for genetic substructuring of natural black poplar populations from the studied river catchment, which is not a frequent phenomenon reported for this species in Europe, and (2) indicates which poplar stands may serve as new genetic conservation units (GCUs) of this species in Europe.Key messageThe genetic resources of black poplar in the Oder River valley are still substantial compared to those reported for rivers in Western Europe. On the other hand, clear signals of isolation by distance and genetic erosion reflected in small effective population sizes and high spatial genetic structure of the analyzed populations were detected. Based on these findings, we recommend the in situ and ex situ conservation strategies for conserving and restoring the genetic resources of black poplar populations in this strongly transformed by human river valley ecosystem.

Genetic diversity of the tire track eel Mastacembelus favus in Southeast Asia inferred from microsatellite markers

The tire track eel, Mastacembelus favus, is an economically important freshwater fish in mainland Southeast Asia. Understanding the spatial population structure is important to design an effective and efficient management of the species. The aim of this study was to investigate the genetic diversity and structure of M. favus populations. In total, 519 individuals from 30 locations across its distribution range were genotyped using a set of eight polymorphic microsatellite loci. Results showed that populations in Mekong and Chao Phraya exhibited higher genetic variability than those from Gulf of Thailand and Malay–Thai Peninsula. Clustering results revealed two evolutionarily isolated groups geographically separated at Northeastern Cambodia; the more widespread group was further divided into two subclusters. The spatial genetic variation and structure of its populations are attributed to the evolutionary history and population dynamics of the species. The study provides important information for the management and conservation of M. favus in Southeast Asia.

High gene flow through pollen partially compensates spatial limited gene flow by seeds for a Neotropical tree in forest conservation and restoration areas

Gene flow may occur both through pollen movement and seed dispersal, although their relative contribution to overall species gene flow is not understood for most tropical trees, which compromises management recommendations. We investigated the implications of seed dispersal limitation, pollen dispersal capacity, and mating system to the spatial genetic structure of populations of the Neotropical legume tree, Centrolobium tomentosum, in Brazil’s Atlantic Forest. We estimated seed dispersal distribution by counting individuals around adult trees; pollen dispersal distribution and outcrossing rates from adult and offspring genotypes, using seven microsatellite loci. Spatial genetic structure was inferred through the correlation among kinship coefficients and geographical distances between pairs of individuals, using nuclear and chloroplast microsatellite markers. We observed restricted seed dispersal, with most seeds (78%) falling up to 10 m from the adult tree trunk. The best-fitted pollen dispersal distribution was the exponential power distribution, with a heavy tail and average pollen dispersal distance of 3191 m. The mating system was preferably allogamous, with an average of eight pollen donors. There was significant spatial genetic structure in all populations, with stronger structure obtained from chloroplast DNA, which suggests that the restricted gene flow by seed dispersal may be compensated by high outcrossing rates and long-distance pollen flow promoted by the large bees that pollinate the species. Our results emphasize the importance of pollination services in fragmented tropical landscapes, where most tree species are pollinated by animals and a large number of species experience seed dispersal limitation.

High gene flow in polar cod (Boreogadus saida) from West-Svalbard and the Eurasian Basin.

The current and projected environmental change of the Arctic Ocean contrasts sharply with the limited knowledge of its genetic biodiversity. Polar cod Boreogadus saida (Lepechin, 1774) is an abundant circumpolar marine fish and ecological key species. The central role of polar cod in the Arctic marine food web warrants a better understanding of its population structure and connectivity. In this study, the genetic population structure of 171 juveniles, collected from several fjords off West-Svalbard (Billefjorden, Hornsund and Kongsfjorden), the northern Sophia Basin and the Eurasian Basin of the Arctic Ocean, was analysed using nine DNA microsatellite loci. Genetic analyses indicated moderate to high genetic diversity, but absence of spatial population structure and isolation-by-distance, suggesting ongoing gene flow between the studied sampling regions. High levels of connectivity may be key for polar cod to maintain populations across wide spatial scales. The adaptive capacity of the species will be increasingly important to face challenges such as habitat fragmentation, ocean warming and changes in prey composition. In view of a limited understanding of the population dynamics and evolution of polar cod, a valuable next step to predict future developments should be an integrated biological evaluation, including population genomics, a life-history approach, and habitat and biophysical dispersal modelling.