HighlightsThis article provides a machine-learning method for estimation of sugar content in target fruit using color appearance.Complex networks based on multidimensional datasets work effectively for color sensor calibration and data rebalancing.Beyond datapoint sparsity in datasets, estimation accuracy in sugar content is assured when an unsupervised-learning algorithm classifies the multidimensional datapoints composed of fruit color and relevant quantities.Abstract. In agriculture, harvests of fruits and vegetables depend on their ripeness, in which farmers should rely not only on the eye-sensed outlook but rigorously on constituents inside the targets, like sugar content. So far, detail measurements on the outlook color of fruits have been widely reported to detect suitable harvest times, where non-destructive instruments, which are costly in general agriculture fields, work well for color estimation whose resolution level is much higher than human eyes. In this study, we propose a scheme with a calibration procedure for sugar content prediction from outlook-color quantities, which is applicable even if a sensor includes systematic errors in output signals or the base dataset includes some datapoint sparsity. Most multidimensional data, which are both in agriculture and in other general cases, are imperfect in terms of several aspects, but they can be useful when we take appropriate sparsity detection and setting of rebalancing weights into account for machine learning procedures. We newly introduce a complex-network method for this purpose, and after the color calibration, we successfully obtain accurate hue and chroma, which are quantities representing a position on calibrated color coordinate, to predict °Brix sugar content in Japanese pears. Keywords: Asian pear, Color Elements, Fruit Ripening, °Brix Sugar Content, OHD.